BAC Information

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BAC

Clone NameB6Ng01-010H20
Chromosome1 (Build37)
Map Location 42,582,003 - 42,717,607
singlet/doubletdoublet
Overlap gene2610017I09Rik
Upstream geneLOC383634, LOC666582
Downstream genePou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010H20.bB6Ng01-010H20.g
ACCDH846146DH846147
length1,045652
definitionDH846146|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H20, 5' end.DH846147|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,582,003 - 42,583,044)(42,716,956 - 42,717,607)
sequence
gaattctagacagagggcttctcagtgcttctagtactgatgaatagagg
ccataggcaggcagggcagcttcggatgcacggcctggacaagagcttcc
tgaacctcattggcttgacaaagaggagagatggggagcatgcagttaga
cccagagagggactacagcagtttccagtgcttcgctgcactgtcatggc
tgcagcttagaatcttttaatctgtgcctgccatcttagaagtcttggca
agctctgtgttccaggttactgtgcatgtgcaagctgatgggcaggccag
cagcagcatgatgttactagcagcagaaacacgacctggcatccttagca
gatagtcaggaagcagtccacacaccttggtgagttgctatgaatgtagt
cactctattgcccgcctgctagagtacgtggcgggttggggtttcccctt
gctaattgaaatgtgccaccatggggtttatgcataaaaagccaagaatg
ctaaagcttgctacacagtttgggtaagttccccttgtaatccactggct
gctgaataaagatgttaatttggctttaaaagtctgtgtgtcagctctaa
ataggatgtctccatcaaatccctcccctcagatctcagggaacaggagg
cagaaggaatatggaaaccagaagggggagaggatatgaggagaacaaat
ccctctaaatcaaccactcaaggctcctatgaactcaaagactgataaca
gcaagcagagggcccccagagttctatctcacgtcctctgtgtagctatt
ccagctttcacgttagtatttaatgggactcctgagtgtgtgagtgagtg
cgtctctgcttcttctgccttttcttggggctcttttccttcttctgtgt
tgccttgtcccacatcaatgtgatggggtttgtttcattttatttatttt
ttatttgcggttgttatctcttagaagtctgtctttttctaatgagaaac
ggaaaagaagtgggtattggatgtaaaaggagagtgtgggaagga
gaattcctctgacctctgaggtgaggagattctctcacctcagcctccgc
gtccctagaagttggtaccctgaattgacagcaccacatctgacttaaaa
aaataattaattttttaaagcaatggcgccctcccatctagcagaatgca
cagtaggtgtgcatagcctccattttatatgccattgtaaggatgagttc
tgtttgaaacctacagagcaaagcacacgtatgtggttcaaacctataat
ctggcagggtgagaacagaaggtactgactgaggaggcataagttaccct
ttgccagacaatagacggagaaaggagtaaggaggagtgggaaagggtcc
aggtggaaaggtcgatgactttgggagcatcgagggaaggaggtaaggtt
agagaatggcaattggacggtagatctagcaggaaggggtgaacatagag
ataggaagctaagattctgggaggtatacaaggcaggctacccctcagaa
ccatgtgagaaagagagagagggagaaagaaagaaggaaaggagagagga
agggaagaaggaaggaaggaagaaagagatggcatctgtcaatatctagt
caatcccggtatgatatgggcagtaggaatgtttatgggtaggaaggtgg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42582003_42583044
seq2: B6Ng01-010H20.b_43_1087

seq1  GAATTCTAGACAGAGGGCTTCTCAGTGCTTCTAGTACTGATGAATAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACAGAGGGCTTCTCAGTGCTTCTAGTACTGATGAATAGAGG  50

seq1  CCATAGGCAGGCAGGGCAGCTTCGGATGCACGGCCTGGACAAGAGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGCAGGCAGGGCAGCTTCGGATGCACGGCCTGGACAAGAGCTTCC  100

seq1  TGAACCTCATTGGCTTGACAAAGAGGAGAGATGGGGAGCATGCAGTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCATTGGCTTGACAAAGAGGAGAGATGGGGAGCATGCAGTTAGA  150

seq1  CCCAGAGAGGGACTACAGCAGTTTCCAGTGCTTCGCTGCACTGTCATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGGGACTACAGCAGTTTCCAGTGCTTCGCTGCACTGTCATGGC  200

seq1  TGCAGCTTAGAATCTTTTAATCTGTGCCTGCCATCTTAGAAGTCTTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTAGAATCTTTTAATCTGTGCCTGCCATCTTAGAAGTCTTGGCA  250

seq1  AGCTCTGTGTTCCAGGTTACTGTGCATGTGCAAGCTGATGGGCAGGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGTTCCAGGTTACTGTGCATGTGCAAGCTGATGGGCAGGCCAG  300

seq1  CAGCAGCATGATGTTACTAGCAGCAGAAACACGACCTGGCATCCTTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATGATGTTACTAGCAGCAGAAACACGACCTGGCATCCTTAGCA  350

seq1  GATAGTCAGGAAGCAGTCCACACACCTTGGTGAGTTGCTATGAATGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCAGGAAGCAGTCCACACACCTTGGTGAGTTGCTATGAATGTAGT  400

seq1  CACTCTATTGCCCGCCTGCTAGAGTACGTGGCGGGTTGGGGTTTCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATTGCCCGCCTGCTAGAGTACGTGGCGGGTTGGGGTTTCCCCTT  450

seq1  GCTAATTGAAATGTGCCACCATGGGGTTTATGCATAAAAAGCCAAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGAAATGTGCCACCATGGGGTTTATGCATAAAAAGCCAAGAATG  500

seq1  CTAAAGCTTGCTACACAGTTTGGGTAAGTTCCCCTTGTAATCCACTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCTTGCTACACAGTTTGGGTAAGTTCCCCTTGTAATCCACTGGCT  550

seq1  GCTGAATAAAGATGTTAATTTGGCTTTAAAAGTCTGTGTGTCAGCTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATAAAGATGTTAATTTGGCTTTAAAAGTCTGTGTGTCAGCTCTAA  600

seq1  ATAGGATGTCTCCATCAAATCCCTCCCCTCAGATCTCAGGGAACAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGTCTCCATCAAATCCCTCCCCTCAGATCTCAGGGAACAGGAGG  650

seq1  CAGAAGGAATATGGAAACCAGAAGGGGGAGAGGATATGAGGAGAACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAATATGGAAACCAGAAGGGGGAGAGGATATGAGGAGAACAAAT  700

seq1  CCCTCTAAATCAACCACTCAAGGCTCCTATGAACTCAAAGACTGATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAATCAACCACTCAAGGCTCCTATGAACTCAAAGACTGATAACA  750

seq1  GCAAGCAGAGGGCCCCCAGAGTTCTATCTCAGGTCCTCTGTGTAGCTATT  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCAAGCAGAGGGCCCCCAGAGTTCTATCTCACGTCCTCTGTGTAGCTATT  800

seq1  CCAGCTTTCAGGTTAGTATTTAATGGGACTCCTGAGTGTGTGAGTGAGTG  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCACGTTAGTATTTAATGGGACTCCTGAGTGTGTGAGTGAGTG  850

seq1  CGTCTCTGCTTCTTCTGCCTTTTCTTGGGGCTCTTTTCCTTCTTCTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTGCTTCTTCTGCCTTTTCTTGGGGCTCTTTTCCTTCTTCTGTGT  900

seq1  TGCCTTGTCCCACATCAATGTGATGGGGTTTGTTTCATTTTATTTTATTT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCCTTGTCCCACATCAATGTGATGGGGTTTGTTTCATTTTA-TTTATTT  949

seq1  TTTATATGCGGTTGTTATCTCTTAGAAGTCTGTCTTTTTCTAATGAGAAA  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGCGGTTGTTATCTCTTAGAAGTCTGTCTTTTTCTAATGAGAAA  999

seq1  CGGAAAAGAAGTGGGTA-TGGATGTAAGAGGAG---GTGGGAAGGA  1042
      ||||||||||||||||| ||||||||| |||||   ||||||||||
seq2  CGGAAAAGAAGTGGGTATTGGATGTAAAAGGAGAGTGTGGGAAGGA  1045

seq1: chr1_42716956_42717607
seq2: B6Ng01-010H20.g_65_716 (reverse)

seq1  CCCCACCTTCCTACCCATAAACATTCCTACTGCCCATATCATACCGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTTCCTACCCATAAACATTCCTACTGCCCATATCATACCGGGAT  50

seq1  TGACTAGATATTGACAGATGCCATCTCTTTCTTCCTTCCTTCCTTCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGATATTGACAGATGCCATCTCTTTCTTCCTTCCTTCCTTCTTCC  100

seq1  CTTCCTCTCTCCTTTCCTTCTTTCTTTCTCCCTCTCTCTCTTTCTCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCTCCTTTCCTTCTTTCTTTCTCCCTCTCTCTCTTTCTCACAT  150

seq1  GGTTCTGAGGGGTAGCCTGCCTTGTATACCTCCCAGAATCTTAGCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGAGGGGTAGCCTGCCTTGTATACCTCCCAGAATCTTAGCTTCCT  200

seq1  ATCTCTATGTTCACCCCTTCCTGCTAGATCTACCGTCCAATTGCCATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATGTTCACCCCTTCCTGCTAGATCTACCGTCCAATTGCCATTCT  250

seq1  CTAACCTTACCTCCTTCCCTCGATGCTCCCAAAGTCATCGACCTTTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTACCTCCTTCCCTCGATGCTCCCAAAGTCATCGACCTTTCCAC  300

seq1  CTGGACCCTTTCCCACTCCTCCTTACTCCTTTCTCCGTCTATTGTCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCCTTTCCCACTCCTCCTTACTCCTTTCTCCGTCTATTGTCTGGC  350

seq1  AAAGGGTAACTTATGCCTCCTCAGTCAGTACCTTCTGTTCTCACCCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTAACTTATGCCTCCTCAGTCAGTACCTTCTGTTCTCACCCTGCC  400

seq1  AGATTATAGGTTTGAACCACATACGTGTGCTTTGCTCTGTAGGTTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAGGTTTGAACCACATACGTGTGCTTTGCTCTGTAGGTTTCAAA  450

seq1  CAGAACTCATCCTTACAATGGCATATAAAATGGAGGCTATGCACACCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCATCCTTACAATGGCATATAAAATGGAGGCTATGCACACCTAC  500

seq1  TGTGCATTCTGCTAGATGGGAGGGCGCCATTGCTTTAAAAAATTAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTCTGCTAGATGGGAGGGCGCCATTGCTTTAAAAAATTAATTAT  550

seq1  TTTTTTAAGTCAGATGTGGTGCTGTCAATTCAGGGTACCAACTTCTAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTCAGATGTGGTGCTGTCAATTCAGGGTACCAACTTCTAGGG  600

seq1  ACGCGGAGGCTGAGGTGAGAGAATCTCCTCACCTCAGAGGTCAGAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGGAGGCTGAGGTGAGAGAATCTCCTCACCTCAGAGGTCAGAGGAAT  650

seq1  TC  652
      ||
seq2  TC  652