BAC Information

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BAC

Clone NameB6Ng01-010M01
Chromosome1 (Build37)
Map Location 56,444,363 - 56,445,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010M01.bB6Ng01-010M01.g
ACCDH846330DH846331
length771975
definitionDH846330|Mus musculus domesticus DNA, BAC clone: B6Ng01-010M01, 5' end.DH846331|Mus musculus domesticus DNA, BAC clone: B6Ng01-010M01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctttagaccagtaactcagttttaattgaattatttgatattt
ttatgtctagtttcttcaattctttatatattttggaattttaccctctg
tcagatgtatagtcagtataaatcttttcctattctgtaggctgttattt
tgtcctattgatagtgttttttccctttatagaagcttttcagtttcatg
aggtcccatttattaattgttgatcttaatgcttgttttattggtgttct
gttcaggaagctgtctcctgtgccaatgcattcaaagctgttccctactt
tcttttctactaggctcagtgtatctggctttatgttgaggtctttgatt
cacccaaacatgagttttgtccaaggtaatagaacatttgcactcttcta
tgtgtagatatccagttagacccgcactatttgttggagatgctttcttt
tttccgttctataatgttggtttctatgtcaaaaattaagcatccatatg
tctacggatttacttctgggtactgaattcattttattgctcaacctgcc
tgtttttatactaataccatgtagtttaaaaaaattactcttgttctgca
gtagagcttgccatcagggatggtgatacttccagaagatcttttaatct
acaggattcttttcattattctggatttttttgtttctatatagggttga
gtattattttttcaaagtctgtaaagaaatgtattggatttttgatggga
attgaatatgtagattgttcg

gaattctaggacctacaaagcaggagtcagaaggactgactcctgcagat
tgtctgtttgtcatcacatttgcctcttggcatgcatgcacctctccccc
atatatacaaccatttaaatagatgagtttatttttcaaatgtttgaaaa
acaaataacagaaagattatatttaagtacactaataagaaaaaagtgta
cgtacagaaaaaaaaaacactttaccagctgtgtaattcctgtctttata
cctatcaactcacacacaaaaggataaaaccaagaaatcttcacagatta
cactaatcagaaattttaggaagagaaaacttcagtattacttacattgt
attaaggcatagtaaaaatagaagcaattatcccaatttgctgaggaaaa
ttataaacaaataagtgttattaaataaatgtaaaagcataaatacctaa
tttatagcacaggaatcatttcttaattatagttgtaagttttgatacaa
aagtataaattagtctttacaaaatagcctccagctaaataataaaggaa
tgatggatcagcataaaatagagcttttcatgttaggaaaattaacatta
tatttcaccataatattctgtgattatcttcatgtatatgtaaaaataca
tttatcaaatggaatgtataagtatttaataaagtcatacaaactaaata
cagctatatataacaggcaacagtcggtcttgtggtcttgggggagaaag
agaaagagagaaagcacacgctaaagaatgaatggcgttttaaaatacac
atattttattgtatgtcagctataattcaatgaaattggaaagatatgat
acatcattaagtgttagcattaacatgatatgttagtaaaatataaatat
aaaattgacacaatagttttatactcaattctaaaggactacagaataga
tgagtgtaggcagtgaacttacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56444363_56445353
seq2: B6Ng01-010M01.g_65_1039

seq1  GAATTCTAGGACCTACAAAGCAGGAGTCAGAAGGACTGACTCCTGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACCTACAAAGCAGGAGTCAGAAGGACTGACTCCTGCAGAT  50

seq1  TGTCTGTTTGTCATCACATTTGCCTCTTGGCATGCATGCACCTCTCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTGTCATCACATTTGCCTCTTGGCATGCATGCACCTCTCCCCC  100

seq1  ATATATACAACCATTTAAATAGATGAGTTTATTTTTCAAATGTTTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACAACCATTTAAATAGATGAGTTTATTTTTCAAATGTTTGAAAA  150

seq1  ACAAATAACAGAAAGATTATATTTAAGTACACTAATAAGAAAAAAGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAACAGAAAGATTATATTTAAGTACACTAATAAGAAAAAAGTGTA  200

seq1  CGTACAGAAAAAAAAAACACTTTACCAGCTGTGTAATTCCTGTCTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAGAAAAAAAAAACACTTTACCAGCTGTGTAATTCCTGTCTTTATA  250

seq1  CCTATCAACTCACACACAAAAGGATAAAACCAAGAAATCTTCACAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAACTCACACACAAAAGGATAAAACCAAGAAATCTTCACAGATTA  300

seq1  CACTAATCAGAAATTTTAGGAAGAGAAAACTTCAGTATTACTTACATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATCAGAAATTTTAGGAAGAGAAAACTTCAGTATTACTTACATTGT  350

seq1  ATTAAGGCATAGTAAAAATAGAAGCAATTATCCCAATTTGCTGAGGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCATAGTAAAAATAGAAGCAATTATCCCAATTTGCTGAGGAAAA  400

seq1  TTATAAACAAATAAGTGTTATTAAATAAATGTAAAAGCATAAATACCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACAAATAAGTGTTATTAAATAAATGTAAAAGCATAAATACCTAA  450

seq1  TTTATAGCACAGGAATCATTTCTTAATTATAGTTGTAAGTTTTGATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCACAGGAATCATTTCTTAATTATAGTTGTAAGTTTTGATACAA  500

seq1  AAGTATAAATTAGTCTTTACAAAATAGCCTCCAGCTAAATAATAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAATTAGTCTTTACAAAATAGCCTCCAGCTAAATAATAAAGGAA  550

seq1  TGATGGATCAGCATAAAATAGAGCTTTTCATGTTAGGAAAATTAACATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATCAGCATAAAATAGAGCTTTTCATGTTAGGAAAATTAACATTA  600

seq1  TATTTCACCATAATATTCTGTGATTATCTTCATGTATATGTAAAAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACCATAATATTCTGTGATTATCTTCATGTATATGTAAAAATACA  650

seq1  TTTATCAAATGGAATGTATAAGTATTTAATAAAGTCATACAAACTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAATGGAATGTATAAGTATTTAATAAAGTCATACAAACTAAATA  700

seq1  CAGCTATATATAACAGGCAACAGTCGGTCTTGTGGTCTTGGGGGAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATATATAACAGGCAACAGTCGGTCTTGTGGTCTTGGGGGAGAAAG  750

seq1  AGAAAGAGAGAAAGCACACGCTAAAGAATGAATGGCGTTTTAAAATACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAAAGCACACGCTAAAGAATGAATGGCGTTTTAAAATACAC  800

seq1  ATATTTTATTGTATGTCAGCTATAATTCAATGAAATTGGAAAGATATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTGTATGTCAGCTATAATTCAATGAAATTGGAAAGATATGAT  850

seq1  ACATCATTAAGTGTTAGCATTAACATGATAATGTTAGTAAAATAATAAAT  900
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  ACATCATTAAGTGTTAGCATTAACATGAT-ATGTTAGTAAAAT-ATAAAT  898

seq1  ATAAAAATTTGACACAATAGTTTTATTTACTCAAATTCTAAAGGGACTAC  950
      ||||||  |||||||||||||||||  ||||| ||||||||| |||||||
seq2  ATAAAA--TTGACACAATAGTTTTA--TACTC-AATTCTAAA-GGACTAC  942

seq1  CAAGAAATTAGATGAGGTGTAAGCCAAGTGAAACTTACAGA  991
        ||||  ||||||| ||||| ||  |||| ||||||||||
seq2  --AGAA--TAGATGA-GTGTAGGC--AGTG-AACTTACAGA  975


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