BAC Information

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BAC

Clone NameB6Ng01-010P05
Chromosome1 (Build37)2 (Build37)
Map Location 163,610,934 - 163,612,0365,883,910 - 5,884,412
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRabgap1l, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650
Downstream geneLOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010P05.bB6Ng01-010P05.g
ACCDH846472DH846473
length1,0921,124
definitionDH846472|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P05, 5' end.DH846473|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(163,610,934 - 163,612,036)(5,883,910 - 5,884,412)
sequence
gaattcactctcgcacctgcgtacaaggcttgtttactagttaggcacag
gaggccagcgctatcttataatggcgattgcttgcggctctccacagcta
ttgctcgctgcacggctctccacaagctaggctggtctcaaactctagac
cctccttttgtgcacccctgagtgctgggattacaggtgtgagctaccac
atctggctttagaatcaagctggctgatcatttgcaagccatgcctgtct
gaatcctgggaagtggtcttgtgtgccttctagttagacagacaggcaga
taaatggataggagagattagagaaaaatacgcagctggcaaataattaa
aaataatgttgaatcagtttaattgtacttcttaaagcacatagaaagaa
gtgggtcatggctgttattagtcatagcttgtttgagcatgccttcttca
atactgctaagaaccaggactgacatgccagaaacacagttctgagatgg
tagtcatagctgagcttattaaatcttcagggtcagtttagagtatagaa
ggtctcatgagacttctcttttttactaagcttgttttctctccccaaag
caatcatgtgcattgagtatattgctagtatgtctttaatgcactagcaa
gatgtcttccttgttttgtgctgattctgggaacatagctgccttatata
taccttttggagatgttttatatatcacaaatgtacacagaaaggatgga
aaactaccaatctaatgacactataacaatacactggtcactcctagtca
aacacatagaagtctacaaaaggcacagaaaataccttgaagtattgtcc
agtactgtccccagggccaccctacctctttcataggcatagatatacag
atattattccatggttggtcagttctactatttgtaaaatgatgctgtct
gctctgtttgttatgcgggtgattctatccgtgtagcaatatagaactga
aagttctacattcttgcatagacccagagaaatctagataatgcaaagca
cgtctggttctatgactttcttggcttaacatagtcttctcc
gaattcaacatcgtattaaaatgaacattgaccatcctcaagtggattta
tcctcaacctacggtgacatgaaaaattctgtggcaatcgcaaatctaag
tagaggcaaaaaaagagcatctagcgaaattaaacatttcttcatattat
gtttatatatcccagaaaattaaggtgggaaggaatgtgcttcaacacaa
taaaggtttgtgtgacacagtcacagtagcatcatacccagtggtgaaag
acccaaagagcattttcttgaagattgggaacaggaaaaaagcaagatgc
tcattcttgtacttcttttgaacagtgttggaaatccatgtcaacagaga
aagcagagatagacaataaaggaagaactggaatagcctcttgtcaaatg
accatgatcacatagaaaatcttagaaacttcctgaattcagtaaaatta
ccagatatggagccaatgtttaaaattacaagctaatctgtccattcaac
tatctaaaaaacagtcatgaaagaaattcattttgtagccgggcgtggtg
gtgcacacctttaatcccagcactcgggaggcagaggcaggtggatttct
gagttcgaggctagcctggtctacaaagtgagttccaggacggccaggac
tatacagagaaaccctgtctcaaccccccccccccaattcattttgtaat
aaaaataaaataaaatacttagggataagtttaatcaaggaggtggaaga
tctatacactaaaaacaatactcatgaaagaaatggaaggagatattaaa
caggaagtcagtccatgttcattgggctggaagaataaacaatgctagtc
tgtctttattttccaagcagtctacaggttcaatacaaaccccacaaaat
tcatactagtgtttcaatagaaataggaaagtaatcctgaaattcataca
ggacacaatactcagatatgcaaaagatctttgccaaaagaagaaagtct
ggggcattgtacacctaacttcaaatacatcaccagctttaataatagca
tggaacctcgcagcttttagacacatagaatcagtggaacaagaagacta
gtaggtcaattttaaatacatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_163610934_163612036
seq2: B6Ng01-010P05.b_45_1136 (reverse)

seq1  GGAGAGAGACTATAGTTAAAGCCAAAGAAAGTCATAGAACACAGACGTGC  50
      ||||| ||||||| ||| ||||| |||||||||||||||| |||||||||
seq2  GGAGA-AGACTAT-GTT-AAGCC-AAGAAAGTCATAGAAC-CAGACGTGC  45

seq1  TTTGCATTATCTAGATTTCTCTGGGTCTATGC-AGAATGTAAGAACTTTC  99
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TTTGCATTATCTAGATTTCTCTGGGTCTATGCAAGAATGT-AGAACTTTC  94

seq1  AGTTCTATATTGCTAACCAACGGATTAGAATCACCCGCATAACAAACAGA  149
      |||||||||||||||    ||||| |||||||||||||||||||||||||
seq2  AGTTCTATATTGCTA---CACGGA-TAGAATCACCCGCATAACAAACAGA  140

seq1  GCAAGAACAGCATCATTTTACAAATAGTAGAACTGACCAACCATGGAATA  199
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA--GACAGCATCATTTTACAAATAGTAGAACTGACCAACCATGGAATA  188

seq1  ATATCTGTATATCTATGCCTATGAAAGAGGTAGGGTGGCCCTGGGGACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTATATCTATGCCTATGAAAGAGGTAGGGTGGCCCTGGGGACAG  238

seq1  TACTGGACAATACTTCAAGGTATTTTCTGTGCCTTTTGTAGACTTCTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGACAATACTTCAAGGTATTTTCTGTGCCTTTTGTAGACTTCTATG  288

seq1  TGTTTGACTAGGAGTGACCAGTGTATTGTTATAGTGTCATTAGATTGGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGACTAGGAGTGACCAGTGTATTGTTATAGTGTCATTAGATTGGTA  338

seq1  GTTTTCCATCCTTTCTGTGTACATTTGTGATATATAAAACATCTCCAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCATCCTTTCTGTGTACATTTGTGATATATAAAACATCTCCAAAA  388

seq1  GGTATATATAAGGCAGCTATGTTCCCAGAATCAGCACAAAACAAGGAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATATAAGGCAGCTATGTTCCCAGAATCAGCACAAAACAAGGAAGA  438

seq1  CATCTTGCTAGTGCATTAAAGACATACTAGCAATATACTCAATGCACATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCTAGTGCATTAAAGACATACTAGCAATATACTCAATGCACATG  488

seq1  ATTGCTTTGGGGAGAGAAAACAAGCTTAGTAAAAAAGAGAAGTCTCATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTGGGGAGAGAAAACAAGCTTAGTAAAAAAGAGAAGTCTCATGA  538

seq1  GACCTTCTATACTCTAAACTGACCCTGAAGATTTAATAAGCTCAGCTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCTATACTCTAAACTGACCCTGAAGATTTAATAAGCTCAGCTATG  588

seq1  ACTACCATCTCAGAACTGTGTTTCTGGCATGTCAGTCCTGGTTCTTAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCATCTCAGAACTGTGTTTCTGGCATGTCAGTCCTGGTTCTTAGCA  638

seq1  GTATTGAAGAAGGCATGCTCAAACAAGCTATGACTAATAACAGCCATGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAAGAAGGCATGCTCAAACAAGCTATGACTAATAACAGCCATGAC  688

seq1  CCACTTCTTTCTATGTGCTTTAAGAAGTACAATTAAACTGATTCAACATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTTTCTATGTGCTTTAAGAAGTACAATTAAACTGATTCAACATT  738

seq1  ATTTTTAATTATTTGCCAGCTGCGTATTTTTCTCTAATCTCTCCTATCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATTATTTGCCAGCTGCGTATTTTTCTCTAATCTCTCCTATCCA  788

seq1  TTTATCTGCCTGTCTGTCTAACTAGAAGGCACACAAGACCACTTCCCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGCCTGTCTGTCTAACTAGAAGGCACACAAGACCACTTCCCAGG  838

seq1  ATTCAGACAGGCATGGCTTGCAAATGATCAGCCAGCTTGATTCTAAAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGACAGGCATGGCTTGCAAATGATCAGCCAGCTTGATTCTAAAGCC  888

seq1  AGATGTGGTAGCTCACACCTGTAATCCCAGCACTCAGGGGTGCACAAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGTAGCTCACACCTGTAATCCCAGCACTCAGGGGTGCACAAAAG  938

seq1  GAGGGTCTAGAGTTTGAGACCAGCCTAGCTTGTGGAGAGCCGTGCAGCGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTAGAGTTTGAGACCAGCCTAGCTTGTGGAGAGCCGTGCAGCGA  988

seq1  GCAATAGCTGTGGAGAGCCGCAAGCAATCGCCATTATAAGATAGCGCTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGCTGTGGAGAGCCGCAAGCAATCGCCATTATAAGATAGCGCTGG  1038

seq1  CCTCCTGTGCCTAACTAGTAAACAAGCCTTGTACGCAGGTGCGAGAGTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTGCCTAACTAGTAAACAAGCCTTGTACGCAGGTGCGAGAGTGA  1088

seq1  ATTC  1103
      ||||
seq2  ATTC  1092

seq1: chr2_5883910_5884412
seq2: B6Ng01-010P05.g_674_1190 (reverse)

seq1  TTCATGTATTTAAAATTTTTAATTGTGATTTGCATAAT-GCCTTGTCAGT  49
      ||||||||||||||||         |||    | || | | ||| |  ||
seq2  TTCATGTATTTAAAAT---------TGA----CCTACTAGTCTTCT-TGT  36

seq1  TTCA-TCCTCCTGTCCCTTTACAGTCTGCCA-----CATGC----CTCAC  89
      | || |  | || |   | || |  |||| |     |||||     | | 
seq2  TCCACTGATTCTATGTGTCTAAAAGCTGCGAGGTTCCATGCTATTATTAA  86

seq1  AACTGACTTTGTAAACACTTGA--TGGGTTTTACCATCTACTTTAGAGTT  137
      | |||    |||    | ||||  |  | | ||| |  | |   ||| ||
seq2  AGCTGGTGATGT----ATTTGAAGTTAGGTGTACAA--TGCCCCAGACTT  130

seq1  TACGTATTT--ACTTCTAGCCTTATAGTATCATAATAGAGAGAAGCTACA  185
      | | | |||   |    | | ||    ||||  | ||  | |   ||  |
seq2  T-CTTCTTTTGGCAAAGATCTTTTGCATATCTGAGTATTGTG-TCCTGTA  178

seq1  GTGATTT---AACTGCTGTGAGCCATGTCTGTCTGATCCC---TGTGACT  229
         ||||    | | || |   | || ||| |   | | |   | ||| |
seq2  TGAATTTCAGGATTACTTT--CCTATTTCTATTGAAACACTAGTATGAAT  226

seq1  TCTCT----TTCATATTTGCATCTGCCAGA-TGCTTCCCTTTTCAGGATA  274
      | | |    ||  || ||| | |||  ||| |||||      | | ||  
seq2  TTTGTGGGGTTTGTA-TTGAACCTG-TAGACTGCTTGGAAAATAAAGA--  272

seq1  GCTGTCTTCAGTTCTGCACTCTTTCCGTCCTTTCCA----GAC--ACTCA  318
       | | ||    || |  | |||| | | ||  |  |    |||  |||  
seq2  -CAGACTAGCATTGTTTATTCTTCCAGCCCAATGAACATGGACTGACTTC  321

seq1  CTG---------TCCTTAGGACATTTGGTTC-TGA--TTTGTTCTTCTTG  356
      |||         |||||    |||||  ||| |||   ||||| ||  ||
seq2  CTGTTTAATATCTCCTT---CCATTTCTTTCATGAGTATTGTTTTTAGTG  368

seq1  TCATTTGTCTTTCTAGCTTTTTGTTAGGATTTTTTACACTGAAGCTCTTT  406
      | ||   || ||| | ||  ||| |   | || |  | || ||| | |||
seq2  T-ATAGATC-TTCCACCTCCTTGATTAAACTTAT--CCCT-AAG-TATTT  412

seq1  TTTTTTTGTTTT---------------------------TTGAGACAGGG  429
      | ||||  ||||                           |||||||||||
seq2  TATTTTATTTTTATTACAAAATGAATTGGGGGGGGGGGGTTGAGACAGGG  462

seq1  TTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  479
      ||||||||| ||| | |||| ||||||||||||||| |||||||||||||
seq2  TTTCTCTGTATAGTCCTGGCCGTCCTGGAACTCACTTTGTAGACCAGGCT  512

seq1  GGCCTTGAACTCAGAAATCAGCCT  503
       ||||                   
seq2  AGCCT-------------------  517