BAC Information

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BAC

Clone NameB6Ng01-011A11
Chromosome1 (Build37)
Map Location 34,120,009 - 34,250,918
singlet/doubletdoublet
Overlap geneDst
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A11.bB6Ng01-011A11.g
ACCDH846526DH846527
length1,0801,144
definitionDH846526|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A11, 5' end.DH846527|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,120,009 - 34,121,084)(34,249,782 - 34,250,918)
sequence
gaattctttacagaaatccttaaacagacttttacaaggaaagacatttt
tctgagcccaactgaccctaaagcaacacaatggagcctacgttatcaag
ctatctccgtattctgttttcaacatttatggcaaatcattgttctgtaa
ggttgctcccaagttggtagctgctttcagcccacgggtacaacacacat
acacacatacattaacccgggtcaggaatacataagattttgcgttaacc
tggcatcagcttagattataaaagctgatttcatggcaagttaagcaaat
gaggttggtttctttgttttcttaaaggcaggtgaaacttagaagtatac
atttaggacagcaagcttagccttaagtgagtgatctcagagcatattat
taactttgctgtgaggtctcccataatttcagtgctttggagattgggat
atatttataaaatgacagcagtatagtatctattgacctgtctatagtct
gtctgtcatccgtcatctgtccgtctatcatatgcatttgtatatatcat
tttcccctgtgaaccaggaatttgggagcaggttgagtgcgattggcatt
aagatgtcacctgggcctgcggtcatctgaggactgactgtggttggggg
atctgcttccagcttgagactcagtgtgactcgtgcattgaccaggagca
ggggacctgggacccttccctttgagtttcctcagacaccgttttaagtg
ttttcaagacactgtgactggcctcttccagaatgaagagagcaagaagg
aagccacactgcttctatgacttcctggtgtcacaatctcagccatgttc
tgttgttacagtccccatattcctagggattagaaggaacttcctctttg
aaaggttgatttaccatcctgtggccgtgttttagtaacacgataagttg
ttgtgagttttatggatcttttctgactgggctgtttgttgggctttgga
gacagaatttactttgtagttcagggttctggcctgaactcacacagctt
tctctctctcatgtcaggaatgctggggta
gaattcttctgccaactttagatctttccttaaaaatacagcgatggggg
ccaatcccaactcaaaggcctgcaaacaaacacagtcccgcatctgttga
ccacgcaggaagaagcataaacccaaacacgaggagtgagagagaagggc
accctgctttctgcgaaattatgtattaaacagcaccattcatggaccac
tctctactggagctggggcccggatgtctcccccaagacctgtacttcaa
accttggcttggtgctacaaaggagaaattgaaacttttagtaggaggac
gttagatccctggagctgtccactctcaaaggtgccaggggcactctgcc
ctttcttcttctgcctttcagactgaagtgaagaattgccttgccacaaa
accagatgtgacaggactaagagaccacaggttacagcctctgaaggcat
gggcccaaatgaaccccacccccacccccgctttacttgattgctgatgg
aaagctgacaggaatgccagtgggtatcttacctctaactgcttcagctg
actcttcaaggcttctagactgctctccacagatgcctgattgtctaagg
ggggtttcatatcttgaagcaaaaccaaatattcatgcattttctcagta
tgctgtaaacactgttgcaagccattggaacactaaaaccaagattggat
acagtaattagcagtccttagggaagaaacttaaagcagacaaaatgtat
gagattgtctcccacgtttcccactggaactgtcatgggaaaccacgtat
gtcaacttactttttcctttcgagctactgtcagaagacctttctttttg
attcagatgtacttttctgaatgctctgggggctcgctgcaaagttcttc
cgagctttctcatctctctggcagtgctgctatgtgcacacttgaaaggg
ttctaccttcggcctctctacagcttgtggggttcaggggacagtgatgt
ccttctttgtttctgagtcactgcagacgtgtgcttttctttctgtcaat
ctgggaacagcacatgatgtttgcctccaagccttcgcctggtctttttc
agtgccatagctatcaacagctatctgtaataagcatttttaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_34120009_34121084
seq2: B6Ng01-011A11.b_44_1122

seq1  GAATTCTTTACAGAAATCCTTAAACAGACTTTTACAAGGAAAGACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAGAAATCCTTAAACAGACTTTTACAAGGAAAGACATTTT  50

seq1  TCTGAGCCCAACTGACCCTAAAGCAACACAATGGAGCCTACGTTATCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCCAACTGACCCTAAAGCAACACAATGGAGCCTACGTTATCAAG  100

seq1  CTATCTCCGTATTCTGTTTTCAACATTTATGGCAAATCATTGTTCTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCGTATTCTGTTTTCAACATTTATGGCAAATCATTGTTCTGTAA  150

seq1  GGTTGCTCCCAAGTTGGTAGCTGCTTTCAGCCCACGGGTACAACACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTCCCAAGTTGGTAGCTGCTTTCAGCCCACGGGTACAACACACAT  200

seq1  ACACACATACATTAACCCGGGTCAGGAATACATAAGATTTTGCGTTAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACATTAACCCGGGTCAGGAATACATAAGATTTTGCGTTAACC  250

seq1  TGGCATCAGCTTAGATTATAAAAGCTGATTTCATGGCAAGTTAAGCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCAGCTTAGATTATAAAAGCTGATTTCATGGCAAGTTAAGCAAAT  300

seq1  GAGGTTGGTTTCTTTGTTTTCTTAAAGGCAGGTGAAACTTAGAAGTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGTTTCTTTGTTTTCTTAAAGGCAGGTGAAACTTAGAAGTATAC  350

seq1  ATTTAGGACAGCAAGCTTAGCCTTAAGTGAGTGATCTCAGAGCATATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGACAGCAAGCTTAGCCTTAAGTGAGTGATCTCAGAGCATATTAT  400

seq1  TAACTTTGCTGTGAGGTCTCCCATAATTTCAGTGCTTTGGAGATTGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGCTGTGAGGTCTCCCATAATTTCAGTGCTTTGGAGATTGGGAT  450

seq1  ATATTTATAAAATGACAGCAGTATAGTATCTATTGACCTGTCTATAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAAAATGACAGCAGTATAGTATCTATTGACCTGTCTATAGTCT  500

seq1  GTCTGTCATCCGTCATCTGTCCGTCTATCATATGCATTTGTATATATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCATCCGTCATCTGTCCGTCTATCATATGCATTTGTATATATCAT  550

seq1  TTTCCCCTGTGAACCAGGAATTTGGGAGCAGGTTGAGTGCGATTGGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTGTGAACCAGGAATTTGGGAGCAGGTTGAGTGCGATTGGCATT  600

seq1  AAGATGTCACCTGGGCCTGCGGTCATCTGAGGACTGACTGTGGTTGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCACCTGGGCCTGCGGTCATCTGAGGACTGACTGTGGTTGGGGG  650

seq1  ATCTGCTTCCAGCTTGAGACTCAGTGTGACTCGTGCATTGACCAGGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTCCAGCTTGAGACTCAGTGTGACTCGTGCATTGACCAGGAGCA  700

seq1  GGGGACCTGGGACCCTTCCCTTTGAGTTTCCTCAGACACCGTTTTAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCTGGGACCCTTCCCTTTGAGTTTCCTCAGACACCGTTTTAAGTG  750

seq1  TTTTCAAGACACTGTGACTGGCCTCTTCCAGAATGAAGAGAGCAAGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACACTGTGACTGGCCTCTTCCAGAATGAAGAGAGCAAGAAGG  800

seq1  AAGCCACACTGCTTCTATGACTTCCTGGTGTCAC-ATCTCAGCCATGTTC  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGCCACACTGCTTCTATGACTTCCTGGTGTCACAATCTCAGCCATGTTC  850

seq1  TGTTGTTACAGTCCCCACATTCCTAGGGATTAGAAGGAAC-TCCTCTTTG  898
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TGTTGTTACAGTCCCCATATTCCTAGGGATTAGAAGGAACTTCCTCTTTG  900

seq1  -AAGGCTGATTTACCAATCTGTGGCCGTGTTTTAGTAACACGAT-AGTTG  946
       |||| ||||||||||  |||||||||||||||||||||||||| |||||
seq2  AAAGGTTGATTTACCATCCTGTGGCCGTGTTTTAGTAACACGATAAGTTG  950

seq1  -TGTGAGTTTTATGGATC-TTTCTGA-TTGGCTGTTTGGTTGGCTTTTGA  993
       ||||||||||||||||| ||||||| | ||||||||| | |||||| ||
seq2  TTGTGAGTTTTATGGATCTTTTCTGACTGGGCTGTTTGTTGGGCTTTGGA  1000

seq1  GACAGGATTTTACTTTGTAGTTCCAAGGTTCTGGCCTTGAACTCACACAG  1043
      |||| || |||||||||||||| || |||||||||| |||||||||||||
seq2  GACA-GAATTTACTTTGTAGTT-CAGGGTTCTGGCC-TGAACTCACACAG  1047

seq1  CTTCTCCTCTCTCAGTGTCAGGATTGCTGGGGT  1076
      |||   |||||||| |||||||| |||||||||
seq2  CTTTCTCTCTCTCA-TGTCAGGAATGCTGGGGT  1079

seq1: chr1_34249782_34250918
seq2: B6Ng01-011A11.g_67_1210 (reverse)

seq1  CTTAAAAATGCCTTTTACAAGCTGCTGTTTGATGGGTATGCAACTGAAAA  50
      ||||||||||| | |||||    |||| ||||| | ||||  ||||||||
seq2  CTTAAAAATGCTTATTACAGATAGCTG-TTGATAGCTATGGCACTGAAAA  49

seq1  AGACCAGGCCGAAGCTTTGGGGCAAACATCATGTGCTGTTCCCAAGATGG  100
      |||||||||  | |||| | ||||||||||||||||||||||||   || 
seq2  AGACCAGGCGAAGGCTTGGAGGCAAACATCATGTGCTGTTCCCAGATTGA  99

seq1  CAG-AAGAAAAGCCACACGTCTGCAGTGACCTCAGAAACAAAGAAGGACA  149
      ||| |||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CAGAAAGAAAAG-CACACGTCTGCAGTGA-CTCAGAAACAAAGAAGGACA  147

seq1  TCACTGTCCCCTGAA-CCCACAAGCTGTAGGAGAAGCCG-AGGTAGAACC  197
      ||||||||||||||| ||||||||||||| |||| |||| ||||||||||
seq2  TCACTGTCCCCTGAACCCCACAAGCTGTA-GAGAGGCCGAAGGTAGAACC  196

seq1  CTT--CAGTGTGCACATAGCAGCACTGCCAG-GAGGTGAG-AAGCTCGG-  242
      |||   ||||||||||||||||||||||||| ||| |||| |||||||| 
seq2  CTTTCAAGTGTGCACATAGCAGCACTGCCAGAGAGATGAGAAAGCTCGGA  246

seq1  AGAACTTTGCAGCGAGCCCCCAGAGCATTCAG-AAAGTACATCTGGATC-  290
      |||||||||||||||||||||||||||||||| |||||||||||| ||| 
seq2  AGAACTTTGCAGCGAGCCCCCAGAGCATTCAGAAAAGTACATCTGAATCA  296

seq1  AAAAGAAAGGTCTTCTGACAGTAGCTCG-AAGGAAAAAGTGAGTTGACAT  339
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  AAAAGAAAGGTCTTCTGACAGTAGCTCGAAAGGAAAAAGTAAGTTGACAT  346

seq1  ACGTGGTTTCCCATGACAGTTCCAGTGGGAAACGTGGGAGACAATCTCAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTTTCCCATGACAGTTCCAGTGGGAAACGTGGGAGACAATCTCAT  396

seq1  ACATTTTGTCTGCTTTAAGTTTCTTCCCTAAGGACTGCTAATTACTGTAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTCTGCTTTAAGTTTCTTCCCTAAGGACTGCTAATTACTGTAT  446

seq1  CCAATCTTGGTTTTAGTGTTCCAATGGCTTGCAACAGTGTTTACAGCATA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTGGTTTTAGTGTTCCAATGGCTTGCAACAGTGTTTACAGCATA  496

seq1  CTGAGAAAATGCATGAATATTTGGTTTTGCTTCAAGATATGAAACCCCCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAATGCATGAATATTTGGTTTTGCTTCAAGATATGAAACCCCCC  546

seq1  TTAGACAATCAGGCATCTGTGGAGAGCAGTCTAGAAGCCTTGAAGAGTCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAATCAGGCATCTGTGGAGAGCAGTCTAGAAGCCTTGAAGAGTCA  596

seq1  GCTGAAGCAGTTAGAGGTAAGATACCCACTGGCATTCCTGTCAGCTTTCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCAGTTAGAGGTAAGATACCCACTGGCATTCCTGTCAGCTTTCC  646

seq1  ATCAGCAATCAAGTAAAGCGGGGGTGGGGGTGGGGTTCATTTGGGCCCAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAATCAAGTAAAGCGGGGGTGGGGGTGGGGTTCATTTGGGCCCAT  696

seq1  GCCTTCAGAGGCTGTAACCTGTGGTCTCTTAGTCCTGTCACATCTGGTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGAGGCTGTAACCTGTGGTCTCTTAGTCCTGTCACATCTGGTTT  746

seq1  TGTGGCAAGGCAATTCTTCACTTCAGTCTGAAAGGCAGAAGAAGAAAGGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAGGCAATTCTTCACTTCAGTCTGAAAGGCAGAAGAAGAAAGGG  796

seq1  CAGAGTGCCCCTGGCACCTTTGAGAGTGGACAGCTCCAGGGATCTAACGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCCCCTGGCACCTTTGAGAGTGGACAGCTCCAGGGATCTAACGT  846

seq1  CCTCCTACTAAAAGTTTCAATTTCTCCTTTGTAGCACCAAGCCAAGGTTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACTAAAAGTTTCAATTTCTCCTTTGTAGCACCAAGCCAAGGTTT  896

seq1  GAAGTACAGGTCTTGGGGGAGACATCCGGGCCCCAGCTCCAGTAGAGAGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACAGGTCTTGGGGGAGACATCCGGGCCCCAGCTCCAGTAGAGAGT  946

seq1  GGTCCATGAATGGTGCTGTTTAATACATAATTTCGCAGAAAGCAGGGTGC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGAATGGTGCTGTTTAATACATAATTTCGCAGAAAGCAGGGTGC  996

seq1  CCTTCTCTCTCACTCCTCGTGTTTGGGTTTATGCTTCTTCCTGCGTGGTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTCTCACTCCTCGTGTTTGGGTTTATGCTTCTTCCTGCGTGGTC  1046

seq1  AACAGATGCGGGACTGTGTTTGTTTGCAGGCCTTTGAGTTGGGATTGGCC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGCGGGACTGTGTTTGTTTGCAGGCCTTTGAGTTGGGATTGGCC  1096

seq1  CCCATCGCTGTATTTTTAAGGAAAGATCTAAAGTTGGCAGAAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCGCTGTATTTTTAAGGAAAGATCTAAAGTTGGCAGAAGAATTC  1144