BAC Information

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BAC

Clone NameB6Ng01-011D11
Chromosome1 (Build37)
Map Location 122,522,674 - 122,664,317
singlet/doubletdoublet
Overlap genenone
Upstream geneEpb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
Downstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011D11.bB6Ng01-011D11.g
ACCDH846660DH846661
length1,0621,129
definitionDH846660|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D11, 5' end.DH846661|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,522,674 - 122,523,734)(122,663,176 - 122,664,317)
sequence
gaattcaaggagagtcacaaaacgctgtccagcatgactgagggttccat
gtaggaagacgttatgccagagtaatgctctattatggttattattgttt
acaaattgtaattttggggagttgcacacatgccactgtgtgtgtgtgcg
tgtaggtcagaggacaggtgtcagggatcaatttttcttcctaccccgtg
agttggggattgagttaggttgcccggctcaggggcaagcgtctttaccc
attgagccatctctgtggcccttagcattatcattattattaataatttt
ttccttagattttcaagaagttaaaaagatggttgtcttgattttactgc
ccctgtgtaccgtctgtcactgctggagttctttctccaacgagagatgt
ctctttccaggaggagtggctgctgtgtagctcaccgagcacactcccct
gcaatcctgtcttttggatctcacacacaaaatcttgtagaaaataaaag
tagtcaggagatccactcagtcaaagactgcttttctagcacacagagag
tcctggatttgattcccgtcccattgtgaatttagtgtcatggggttagg
aggatcagaagtccaaggtcatttcttggtttatggatttcaaggagtgt
ccccaggacaaaataagaccaagcctcataaagaaacgagagagagggag
agagagagcataagatgaaagaaaatagtagttaaatatattcaaatagt
actttgtaaaattaaaaaaagaaaaattccagttttggtcaaagaatagc
cctttgcatttttaaaaaattaggcagtccatttctcacctctttctttc
ctcctggccgggttgcttctctacaaatgagcattagcgataataatgaa
cattagtggtgctctatgtgtgtgacatctttgagacttttataaaactg
gggcaaacctgaagcctgctctggtccctcagcctggactcttcccttcc
cgtcttggaagaatttgagcagcttccaagccagcctggtgccctgtgga
tacgtttccatt
gaattcttacccactgagtcatctccagcccctcttccttcagctttggc
tacgtttccctttcatggatggaaataagtttcaggtgttggtgctttcc
acaaatagataggactgcttagaaagggctcgtggcagaagccgtgaact
caaatgtccataaacaccaggcatgttacacaagtgagtgagacaggcca
tataactttctgaatacagttatgttctttttggatactaaataggaatt
ttctttcttcctcagagaaatatactctctccttttctttttgaaactga
tgatgttcttggccattctctcaattttctgcttttcttataaaaagaat
ttctaccctgctcttaactcaatttaagaattaaaaaaaaagtatagacg
caatgataaattgcagctgacacttgcctcactgttaggggctccacagg
aagttatgggactgtgcagaactggggaacacgggactcactcacagaag
cagcccaactcaatttcaggttgtgctgccaagtggtaatgcaggggcct
gctgaagccaggtcttatttttcaagagaagccagaaatttgtatattta
tatgaaatcttctaattttcaaatgttgccaactaattcaaaatattttt
aagacctagtgtgagccagaattctgcaatccaagcaaaacaaatctaca
ggcaaggtctggctcatgagccaccaatttgcaatcattggtcctgaact
agacattatgtgcctcaaaggaaaaggggggaaagcaaaagaaaaggaaa
ttaatgtttttgaacacttactctatgcctggaacttggtctctgccctc
atttaatcagcccagcagcttaagaaatattgtgggccccatttttactg
aagaaacaattagatttgagtcaacgacctgctcaaaacaactcaactag
agactttcaaaccagagaagtgcctatttcctgttccctaaatacatctc
atctgtgtgtctcctgttcttctgctctgggcgttacttaggcccaagtc
ctttttctgatcacccattctcagctccccagggtcctgggcctcattta
cacccatacattcttgggaggtctagccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_122522674_122523734
seq2: B6Ng01-011D11.b_43_1104

seq1  GAATTCAAGGAGAGTCACAAAACGCTGTCCAGCATGACTGAGGGTTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGAGTCACAAAACGCTGTCCAGCATGACTGAGGGTTCCAT  50

seq1  GTAGGAAGACGTTATGCCAGAGTAATGCTCTATTATGGTTATTATTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGACGTTATGCCAGAGTAATGCTCTATTATGGTTATTATTGTTT  100

seq1  ACAAATTGTAATTTTGGGGAGTTGCACACATGCCACTGTGTGTGTGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGTAATTTTGGGGAGTTGCACACATGCCACTGTGTGTGTGTGCG  150

seq1  TGTAGGTCAGAGGACAGGTGTCAGGGATCAATTTTTCTTCCTACCCCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTCAGAGGACAGGTGTCAGGGATCAATTTTTCTTCCTACCCCGTG  200

seq1  AGTTGGGGATTGAGTTAGGTTGCCCGGCTCAGGGGCAAGCGTCTTTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGATTGAGTTAGGTTGCCCGGCTCAGGGGCAAGCGTCTTTACCC  250

seq1  ATTGAGCCATCTCTGTGGCCCTTAGCATTATCATTATTATTAATAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCCATCTCTGTGGCCCTTAGCATTATCATTATTATTAATAATTTT  300

seq1  TTCCTTAGATTTTCAAGAAGTTAAAAAGATGGTTGTCTTGATTTTACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGATTTTCAAGAAGTTAAAAAGATGGTTGTCTTGATTTTACTGC  350

seq1  CCCTGTGTACCGTCTGTCACTGCTGGAGTTCTTTCTCCAACGAGAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTACCGTCTGTCACTGCTGGAGTTCTTTCTCCAACGAGAGATGT  400

seq1  CTCTTTCCAGGAGGAGTGGCTGCTGTGTAGCTCACCGAGCACACTCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGGAGGAGTGGCTGCTGTGTAGCTCACCGAGCACACTCCCCT  450

seq1  GCAATCCTGTCTTTTGGATCTCACACACAAAATCTTGTAGAAAATAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTGTCTTTTGGATCTCACACACAAAATCTTGTAGAAAATAAAAG  500

seq1  TAGTCAGGAGATCCACTCAGTCAAAGACTGCTTTTCTAGCACACAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGAGATCCACTCAGTCAAAGACTGCTTTTCTAGCACACAGAGAG  550

seq1  TCCTGGATTTGATTCCCGTCCCATTGTGAATTTAGTGTCATGGGGTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATTTGATTCCCGTCCCATTGTGAATTTAGTGTCATGGGGTTAGG  600

seq1  AGGATCAGAAGTCCAAGGTCATTTCTTGGTTTATGGATTTCAAGGAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGAAGTCCAAGGTCATTTCTTGGTTTATGGATTTCAAGGAGTGT  650

seq1  CCCCAGGAC-AAATAAGACCAAGCCTCATAAAG-AACGAGAGAGAGGGAG  698
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  CCCCAGGACAAAATAAGACCAAGCCTCATAAAGAAACGAGAGAGAGGGAG  700

seq1  AGAGAGAGCATAAGATGAAAGAAAATAGTAGTTAAATATATTCAAATAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCATAAGATGAAAGAAAATAGTAGTTAAATATATTCAAATAGT  750

seq1  ACTTTGTAAAATTAAAAAAAGAAAAATTCCAG-TTTGGTCAAAGAATAG-  796
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  ACTTTGTAAAATTAAAAAAAGAAAAATTCCAGTTTTGGTCAAAGAATAGC  800

seq1  CCTTTGCATTTTTAAAAAAATTAGGCAGTCCATTTCTCACCTCTTTC-TT  845
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  CCTTTGCATTTTT-AAAAAATTAGGCAGTCCATTTCTCACCTCTTTCTTT  849

seq1  CCTCCTGGCCGGGTTGCTTCTCTACAAAATGAGCATTAGCGATAAT-ATG  894
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  CCTCCTGGCCGGGTTGCTTCTCTAC-AAATGAGCATTAGCGATAATAATG  898

seq1  AACATTAGT-GTGCTCTATGTGTGTGACACCTTTGAGACTTTTATAAAAA  943
      ||||||||| ||||||||||||||||||| ||||||||||||||| ||||
seq2  AACATTAGTGGTGCTCTATGTGTGTGACATCTTTGAGACTTTTAT-AAAA  947

seq1  CTGGGGCAAAACCTGGAGCCTGCTCTCTGTCCCTCAGCCTGGACTCTTCC  993
      ||||||| ||||||| ||||||||||  ||||||||||||||||||||||
seq2  CTGGGGC-AAACCTGAAGCCTGCTCT-GGTCCCTCAGCCTGGACTCTTCC  995

seq1  CCTCCCGTCCTTGGAAG-ATTTGAGCAGCTCCAAGGCCAGCCTGGTGTCC  1042
      | |||||| |||||||| |||||||||||| | | |||||||||||| ||
seq2  CTTCCCGT-CTTGGAAGAATTTGAGCAGCTTCCAAGCCAGCCTGGTGCCC  1044

seq1  TCTGTGGTACCGTTCCATT  1061
      | || | |||  |||||||
seq2  TGTG-GATACGTTTCCATT  1062

seq1: chr1_122663176_122664317
seq2: B6Ng01-011D11.g_65_1193 (reverse)

seq1  CGGCTAAGACC-ACCAAGAATGTATGTGTGTAAATGAGGACCCAGGACAC  49
      ||||| |||||  ||||||||||||| |||||||||||| |||||||| |
seq2  CGGCT-AGACCTCCCAAGAATGTATGGGTGTAAATGAGG-CCCAGGACCC  48

seq1  TGGGGAGGCCTGGGAGAATGGGTGATCAG-AAAAGGACTTGGGCTTAAAA  98
      |||||||  ||  |||||||||||||||| |||||||||||||| |  ||
seq2  TGGGGAG--CT--GAGAATGGGTGATCAGAAAAAGGACTTGGGCCT--AA  92

seq1  GTAAAACGCCCAGAGCAGAGAGAACAGGAGACACACAGATGAAGATGTAT  148
      ||  ||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GT--AACGCCCAGAGCAGA-AGAACAGGAGACACACAGATG-AGATGTAT  138

seq1  TTAGGGGACAGGAAATAGGCAACTTCCTCTGGTTTGAAAGTCTCTAGTTG  198
      |||||| ||||||||||||| |||| ||||||||||||||||||||||||
seq2  TTAGGGAACAGGAAATAGGC-ACTT-CTCTGGTTTGAAAGTCTCTAGTTG  186

seq1  AGTTGTTTTGAGCAGGTCGTTGAACTCAAATCTAATTGTTTCTTCAGTAA  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTTGTTTTGAGCAGGTCGTTG-ACTCAAATCTAATTGTTTCTTCAGTAA  235

seq1  AAATGGGGCCAACAATATTTCTTAAGCTGCTGGGCTGATTAAATGAGGGC  298
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGCCCACAATATTTCTTAAGCTGCTGGGCTGATTAAATGAGGGC  285

seq1  AGAGACCAAGTTCCAGGCATAGAGTAAGTGTTCAAAAACATTAATTTCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCAAGTTCCAGGCATAGAGTAAGTGTTCAAAAACATTAATTTCCT  335

seq1  TTTCTTTTGCTTTCCCCCCTTTTCCTTTGAGGCACATAATGTCTAGTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGCTTTCCCCCCTTTTCCTTTGAGGCACATAATGTCTAGTTCA  385

seq1  GGACCAATGATTGCAAATTGGTGGCTCATGAGCCAGACCTTGCCTGTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAATGATTGCAAATTGGTGGCTCATGAGCCAGACCTTGCCTGTAGA  435

seq1  TTTGTTTTGCTTGGATTGCAGAATTCTGGCTCACACTAGGTCTTAAAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGCTTGGATTGCAGAATTCTGGCTCACACTAGGTCTTAAAAAT  485

seq1  ATTTTGAATTAGTTGGCAACATTTGAAAATTAGAAGATTTCATATAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAATTAGTTGGCAACATTTGAAAATTAGAAGATTTCATATAAATA  535

seq1  TACAAATTTCTGGCTTCTCTTGAAAAATAAGACCTGGCTTCAGCAGGCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTTCTGGCTTCTCTTGAAAAATAAGACCTGGCTTCAGCAGGCCC  585

seq1  CTGCATTACCACTTGGCAGCACAACCTGAAATTGAGTTGGGCTGCTTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTACCACTTGGCAGCACAACCTGAAATTGAGTTGGGCTGCTTCTG  635

seq1  TGAGTGAGTCCCGTGTTCCCCAGTTCTGCACAGTCCCATAACTTCCTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTCCCGTGTTCCCCAGTTCTGCACAGTCCCATAACTTCCTGTG  685

seq1  GAGCCCCTAACAGTGAGGCAAGTGTCAGCTGCAATTTATCATTGCGTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTAACAGTGAGGCAAGTGTCAGCTGCAATTTATCATTGCGTCTA  735

seq1  TACTTTTTTTTTAATTCTTAAATTGAGTTAAGAGCAGGGTAGAAATTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTTTAATTCTTAAATTGAGTTAAGAGCAGGGTAGAAATTCTT  785

seq1  TTTATAAGAAAAGCAGAAAATTGAGAGAATGGCCAAGAACATCATCAGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGAAAAGCAGAAAATTGAGAGAATGGCCAAGAACATCATCAGTT  835

seq1  TCAAAAAGAAAAGGAGAGAGTATATTTCTCTGAGGAAGAAAGAAAATTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGAAAAGGAGAGAGTATATTTCTCTGAGGAAGAAAGAAAATTCC  885

seq1  TATTTAGTATCCAAAAAGAACATAACTGTATTCAGAAAGTTATATGGCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTATCCAAAAAGAACATAACTGTATTCAGAAAGTTATATGGCCT  935

seq1  GTCTCACTCACTTGTGTAACATGCCTGGTGTTTATGGACATTTGAGTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTCACTTGTGTAACATGCCTGGTGTTTATGGACATTTGAGTTCA  985

seq1  CGGCTTCTGCCACGAGCCCTTTCTAAGCAGTCCTATCTATTTGTGGAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCTGCCACGAGCCCTTTCTAAGCAGTCCTATCTATTTGTGGAAAG  1035

seq1  CACCAACACCTGAAACTTATTTCCATCCATGAAAGGGAAACGTAGCCAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACACCTGAAACTTATTTCCATCCATGAAAGGGAAACGTAGCCAAA  1085

seq1  GCTGAAGGAAGAGGGGCTGGAGATGACTCAGTGGGTAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGAAGAGGGGCTGGAGATGACTCAGTGGGTAAGAATTC  1129