BAC Information

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BAC

Clone NameB6Ng01-011G03
Chromosome1 (Build37)
Map Location 154,702,188 - 154,877,486
singlet/doubletdoublet
Overlap geneSmg7, EG668097, Nmnat2
Upstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2
Downstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011G03.bB6Ng01-011G03.g
ACCDH846783DH846784
length901375
definitionDH846783|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G03, 5' end.DH846784|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,876,587 - 154,877,486)(154,702,188 - 154,702,568)
sequence
gaattcaagactcaagtccatcgtgtctgcttggacatagaacaaccaag
gggattgaggacaagactacccactttcagatccagatgggtcacccagg
gacaactgcatgctgatgtttcagcagctgtgtgtgttgtgggggggggc
actattaagaaagctctaggctcacctcctgtttgctctggtcagcaagt
caagaacaggtcacaggatgttgtcctcatgaagacaatgacaggattaa
ggcacagcttgggagtaggttatcaaaaatatctgattcagacattccta
tttctcctgatcataactgtgaagtataacgtaccaggcacgttacaaat
gccttctaaatccgctcaactattccattactcctattttattgggtttc
tgtggaaagtcactgaacaactacagtcaaaacaataacttcaagtcaac
ctggtgctgagtaccttcagaattcaacattctagaggctaaagctagca
gagcctgagtcctgcctgagctacacagcaagaccctgtctcaaaacaaa
acaaaatccccaatgtcaggtttcaccttctctattgggctcccactcca
ctcaaatgcacagcttagaagtgtgggctagaaaactccatggtctgagc
tacgctctacctccccattattccgttcccagtctggaaaactgacagct
cagtggtgtgcacgtggaaagacagccctcaatataaaatgtaaaggaat
agccaatatggctactgtctgggtctatatgtgttatgatttgaaacttt
ccatgcccctgtagtagctaccatatttagaaaactccataccagctggt
gtggctactgggggaacctttaggccatggagatctagctggcaaggctg
g
taatgaggtcccattacttattaattagatagtcccttgttggtgtgtac
aacccaggtcacagcagaaacttccgagttaaaacaactactaagatatg
caggggaggaactctgctactgcagtcttttggagacattatttctacaa
ccaaaagtacattgaaaatgccattcatcactaaaatcaaagggtcttaa
gaaatgttctactgtcttaaggaaattaagaattattttcagtcatctat
aggtaaataaaataaaaaatatagttacaaggtagaatcaatttgtgtat
agaaaatggaagtttctcatttaaacaaaacagaatagggtggcacagat
aaggcttgatttggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154876587_154877486
seq2: B6Ng01-011G03.b_43_943 (reverse)

seq1  CCAGCCCTGCCAGCTAGA-CTCCATGGCCTAAAGGTTCCCCCCAGTGGCA  49
      |||||| ||||||||||| |||||||||||||||||| |||||||| || 
seq2  CCAGCCTTGCCAGCTAGATCTCCATGGCCTAAAGGTT-CCCCCAGTAGCC  49

seq1  CCACCAGCTGGTATAGAGTTTTCTAAATATGTGAGCTTACTACAGGGGCA  99
       ||||||||||||| ||||||||||||||||  ||| |||||||||||||
seq2  ACACCAGCTGGTATGGAGTTTTCTAAATATGGTAGC-TACTACAGGGGCA  98

seq1  TGG-AAGTTTCAAATCATAACACATATAGACCCAGACAGTAGCCATATTG  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTCAAATCATAACACATATAGACCCAGACAGTAGCCATATTG  148

seq1  GCTATTCCTTTACATTTTATATTGAGGGCTGTCTTTCCACGTGCACACCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCTTTACATTTTATATTGAGGGCTGTCTTTCCACGTGCACACCA  198

seq1  CTGAGCTGTCAGTTTTCCAGACTGGGAACGGAATAATGGGGAGGTAGAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGTCAGTTTTCCAGACTGGGAACGGAATAATGGGGAGGTAGAGC  248

seq1  GTAGCTCAGACCATGGAG-TTTCTAGCCCACACTTCTAAGCTGTGCATTT  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTAGCTCAGACCATGGAGTTTTCTAGCCCACACTTCTAAGCTGTGCATTT  298

seq1  GAGTGGAGTGGGAGCCCAATAGAGAAGGTGAAACCTGACATTTGGGGAAT  347
      |||||||||||||||||||||||||||||||||||||||||| |||   |
seq2  GAGTGGAGTGGGAGCCCAATAGAGAAGGTGAAACCTGACATTGGGGATTT  348

seq1  TGTTTTGTTTTGAGACAGGGTCTTGCTGTGTAGCTCAGGCAGGACTCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGAGACAGGGTCTTGCTGTGTAGCTCAGGCAGGACTCAGG  398

seq1  CTCTGCTAGCTTTAGCCTCTAGAATGTTGAATTCTGAAGGTACTCAGCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTAGCTTTAGCCTCTAGAATGTTGAATTCTGAAGGTACTCAGCAC  448

seq1  CAGGTTGACTTGAAGTTATTGTTTTGACTGTAGTTGTTCAGTGACTTTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGACTTGAAGTTATTGTTTTGACTGTAGTTGTTCAGTGACTTTCC  498

seq1  ACAGAAACCCAATAAAATAGGAGTAATGGAATAGTTGAGCGGATTTAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACCCAATAAAATAGGAGTAATGGAATAGTTGAGCGGATTTAGAA  548

seq1  GGCATTTGTAACGTGCCTGGTACGTTATACTTCACAGTTATGATCAGGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGTAACGTGCCTGGTACGTTATACTTCACAGTTATGATCAGGAG  598

seq1  AAATAGGAATGTCTGAATCAGATATTTTTGATAACCTACTCCCAAGCTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAATGTCTGAATCAGATATTTTTGATAACCTACTCCCAAGCTGT  648

seq1  GCCTTAATCCTGTCATTGTCTTCATGAGGACAACATCCTGTGACCTGTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATCCTGTCATTGTCTTCATGAGGACAACATCCTGTGACCTGTTC  698

seq1  TTGACTTGCTGACCAGAGCAAACAGGAGGTGAGCCTAGAGCTTTCTTAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGCTGACCAGAGCAAACAGGAGGTGAGCCTAGAGCTTTCTTAAT  748

seq1  AGTGCCCCCCCCCACAACACACACAGCTGCTGAAACATCAGCATGCAGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCCCCCCCACAACACACACAGCTGCTGAAACATCAGCATGCAGTT  798

seq1  GTCCCTGGGTGACCCATCTGGATCTGAAAGTGGGTAGTCTTGTCCTCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGGTGACCCATCTGGATCTGAAAGTGGGTAGTCTTGTCCTCAAT  848

seq1  CCCCTTGGTTGTTCTATGTCCAAGCAGACACGATGGACTTGAGTCTTGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGTTGTTCTATGTCCAAGCAGACACGATGGACTTGAGTCTTGAA  898

seq1  TTC  900
      |||
seq2  TTC  901

seq1: chr1_154702188_154702568
seq2: B6Ng01-011G03.g_68_448

seq1  GAATTCTAATGAGGTCCCATTACTTATTAATTAGATAGTCCCTTGTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGAGGTCCCATTACTTATTAATTAGATAGTCCCTTGTTGGT  50

seq1  GTGTACAACCCAGGTCACAGCAGAAACTTCCGAGTTAAAACAACTACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAACCCAGGTCACAGCAGAAACTTCCGAGTTAAAACAACTACTAA  100

seq1  GATATGCAGGGGAGGAACTCTGCTACTGCAGTCTTTTGGAGACATTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCAGGGGAGGAACTCTGCTACTGCAGTCTTTTGGAGACATTATTT  150

seq1  CTACAACCAAAAGTACATTGAAAATGCCATTCATCACTAAAATCAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACCAAAAGTACATTGAAAATGCCATTCATCACTAAAATCAAAGGG  200

seq1  TCTTAAGAAATGTTCTACTGTCTTAAGGAAATTAAGAATTATTTTCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGAAATGTTCTACTGTCTTAAGGAAATTAAGAATTATTTTCAGTC  250

seq1  ATCTATAGGTAAATAAAATAAAAAATATAGTTACAAGGTAGAATCAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGGTAAATAAAATAAAAAATATAGTTACAAGGTAGAATCAATTT  300

seq1  GTGTATAGAAAATGGAAGTTTCTCATTTAAACAAAACAGAATAGGGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAGAAAATGGAAGTTTCTCATTTAAACAAAACAGAATAGGGTGGC  350

seq1  ACAGATAAGGCTTGATTTGGGGGGGGGGGGG  381
      |||||||||||||||||||||||||||||||
seq2  ACAGATAAGGCTTGATTTGGGGGGGGGGGGG  381