BAC Information

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BAC

Clone NameB6Ng01-011L16
Chromosome1 (Build37)
Map Location 58,119,265 - 58,277,805
singlet/doubletdoublet
Overlap geneAox1, Aox3, Aox4
Upstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2
Downstream geneAox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011L16.bB6Ng01-011L16.g
ACCDH847031DH847032
length1,0071,088
definitionDH847031|Mus musculus domesticus DNA, BAC clone: B6Ng01-011L16, 5' end.DH847032|Mus musculus domesticus DNA, BAC clone: B6Ng01-011L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,119,265 - 58,120,278)(58,276,728 - 58,277,805)
sequence
gaattccagcacgatgtcagagtcagttccatgtgttgcttttagcaaat
tcccaagtgagcattacagaatctgcgtatgcagtgtgtgtaagcacaca
ggtgtctgtgtgcttgtgttagtgtgtgcatgtgcacccgtgtgtgtaca
tgtgtacctgtgagacagagatgggggtggggcgcctgttccctgtacta
taaattgccattctttttgtggggaaaataatggatataatttactctga
tgaaaagcagaccatgtcataatctttcttgggaacttactagataaatt
aacagacatgtgccttaagtttttaatgcagtggttctcaaccttcctaa
tgccgagactctttaatatagttctgcatgttgtggatattccaaccata
aagttatcttcattgctactttataactgtaaaattgctactactatgaa
tcgtaatgtaaacatctgtgttttccaatgctcttaggtgacccctgtga
aagggtcgttcgagtcccaagttgagaaccactgctttaatgagtcagag
tgcctgatgcatgtcttagttctgtgtcttttaactccacgaactcattc
tagttaaccttatgggacatcagtttccttctttcgaagaagagagccat
accagccttatagagtggttgagagggttccataagtgaaaaagcacagt
gctcattccagacctggcatatagaagtatcacaggggtagaagaggcag
tgagcgagtcctgagctatgactctgatggtggaggatgtggtgggaccc
agcccagacacttggagaatacagaccaacctgaacttgggttgcctggc
tgtagagcctgctctcctggctcttataaagaccatagcaatttgcttgg
ctatcagctgaacctacctgcctgagtctctcctctgcctctcccaggcc
tggaatgaaaggatgctggacacagcctgtagctggattggatgaatgcc
cccttgc
gaattcagctgtgggtgtgtttaaagacaatgggcagaatgcctgcgtat
ttaaaagaggcttttgcagcccaggccaagcctgctccagggcaatcact
aaacaaatgtgactctcatcccagaaagatcccagaaagttaaatctact
cagcacagaaggaagcctggatatgtagagtgatgagaggtgaagactgg
gtaccgtccacagagcatggctgtttgagcccatggctgaatgatttgac
catgtctctgttgagggcagtagacagtcaaggaagctttcatgttacag
ctgtaacctttcagggaaggagtcctaaggcagaaacttcagttttctcc
atctacactctgcccttgaaactcccccagcgaaagttcctgctcaagca
taagaaaacaacgctgactcttctttgacaagccttgtaaatgtgagcag
ccagtctttggcatttgggagatgttgctggagtacacacacacacacac
acacacacacacacacacacacacgtctgaactctcattagcatcccata
ctttgcaatagtgagacctgaggaagcctactttctaccagcttcagttt
tctccttcattttctccttgagtcagacagctcttgtacttgagttaccg
gcaagaatgaaggtctcttggtttaagtaagatgtcttacagtcaaggac
agtctcttgaagagatctctgaagaagatttctggctatgaatcatggat
gcttagaacactagaatgcaaaagcgtgaaggctttcaagctcggagatc
tcaggagaacggacggcctatgggaccatgtcctgtaccgccatccggtc
tccaccacaggctccttaactgcactgggtgcaccctctttttgatgctt
ctccacactttccactgtggtaatggctgctccaatgaagccagcagatg
ggtcaccagcatgctggttgctggtagtggtctgtgatgggctttatgta
aagagaaccacacttgcaatcacgagaaatgggtgaaaaaactctcgtga
gttatgtcacgctatggagatgacagggcttaatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58119265_58120278
seq2: B6Ng01-011L16.b_47_1053

seq1  GAATTCCAGCACGATGTCAGAGTCAGTTCCATGTGTTGCTTTTAGCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACGATGTCAGAGTCAGTTCCATGTGTTGCTTTTAGCAAAT  50

seq1  TCCCAAGTGAGCATTACAGAATCTGCGTATGCAGTGTGTGTAAGCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGAGCATTACAGAATCTGCGTATGCAGTGTGTGTAAGCACACA  100

seq1  GGTGTCTGTGTGCTTGTGTTAGTGTGTGCATGTGCACCCGTGTGTGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGTGTGCTTGTGTTAGTGTGTGCATGTGCACCCGTGTGTGTACA  150

seq1  TGTGTACCTGTGAGACAGAGATGGGGGTGGGGCGCCTGTTCCCTGTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCTGTGAGACAGAGATGGGGGTGGGGCGCCTGTTCCCTGTACTA  200

seq1  TAAATTGCCATTCTTTTTGTGGGGAAAATAATGGATATAATTTACTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGCCATTCTTTTTGTGGGGAAAATAATGGATATAATTTACTCTGA  250

seq1  TGAAAAGCAGACCATGTCATAATCTTTCTTGGGAACTTACTAGATAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCAGACCATGTCATAATCTTTCTTGGGAACTTACTAGATAAATT  300

seq1  AACAGACATGTGCCTTAAGTTTTTAATGCAGTGGTTCTCAACCTTCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACATGTGCCTTAAGTTTTTAATGCAGTGGTTCTCAACCTTCCTAA  350

seq1  TGCCGAGACTCTTTAATATAGTTCTGCATGTTGTGGATATTCCAACCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGAGACTCTTTAATATAGTTCTGCATGTTGTGGATATTCCAACCATA  400

seq1  AAGTTATCTTCATTGCTACTTTATAACTGTAAAATTGCTACTACTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCTTCATTGCTACTTTATAACTGTAAAATTGCTACTACTATGAA  450

seq1  TCGTAATGTAAACATCTGTGTTTTCCAATGCTCTTAGGTGACCCCTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAATGTAAACATCTGTGTTTTCCAATGCTCTTAGGTGACCCCTGTGA  500

seq1  AAGGGTCGTTCGAGTCCCAAGTTGAGAACCACTGCTTTAATGAGTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCGTTCGAGTCCCAAGTTGAGAACCACTGCTTTAATGAGTCAGAG  550

seq1  TGCCTGATGCATGTCTTAGTTCTGTGTCTTTTAACTCCACGAACTCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGATGCATGTCTTAGTTCTGTGTCTTTTAACTCCACGAACTCATTC  600

seq1  TAGTTAACCTTATGGGACATCAGTTTCCTTCTTTCGAAGAAGAGAGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAACCTTATGGGACATCAGTTTCCTTCTTTCGAAGAAGAGAGCCAT  650

seq1  ACCAGCCTTATAGAGTGGTTGAGAGGGTTCCATAAGTGAAAAAGCACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTTATAGAGTGGTTGAGAGGGTTCCATAAGTGAAAAAGCACAGT  700

seq1  GCTCATTCCAGACCTGGCATATAGAAGTATCACAGGGGTAGAAGAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCCAGACCTGGCATATAGAAGTATCACAGGGGTAGAAGAGGCAG  750

seq1  TGAGCGAGTCCTGAGCTAAGGACTCTGATGGTGGAGGATGTGGTGGGACC  800
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  TGAGCGAGTCCTGAGCT-ATGACTCTGATGGTGGAGGATGTGGTGGGACC  799

seq1  CAGCCCAGACACTTGGAGAATAGCAGACCAACCTGAACTTGGGTTGCCTG  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGCCCAGACACTTGGAGAATA-CAGACCAACCTGAACTTGGGTTGCCTG  848

seq1  GCTGTAGAGCCTGCTCTCCTGGCTCCTATAAAGACCATAGCAATTTGCCT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  GCTGTAGAGCCTGCTCTCCTGGCTCTTATAAAGACCATAGCAATTTG-CT  897

seq1  TGGCTATCAGCTGAACCTACCTGCCTGAGTCTCCTCCTCTGCCTCTCCCA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCTATCAGCTGAACCTACCTGCCTGAGTCT-CTCCTCTGCCTCTCCCA  946

seq1  GGCCCTGGAATGAAGGGATGCTGGACACAGCCTGTAGGCTGGTTTTGGAT  1000
      || ||||||||||| ||||||||||||||||||||| |||||  ||||||
seq2  GG-CCTGGAATGAAAGGATGCTGGACACAGCCTGTA-GCTGG-ATTGGAT  993

seq1  GAAGTCACCCTTGC  1014
      |||  | |||||||
seq2  GAATGCCCCCTTGC  1007

seq1: chr1_58276728_58277805
seq2: B6Ng01-011L16.g_68_1155 (reverse)

seq1  GGAAATATAGCCCTGTCATCCTCCTAGGCTGAACTAACTCAC-CGAGTTT  49
      ||||||  ||||||||||||  | |||  |||  ||||||||  ||||||
seq2  GGAAATTAAGCCCTGTCATCTCCATAGCGTGACATAACTCACGAGAGTTT  50

seq1  TCTCACCCGTTTCTCGTGATTTC-AGTGT-GTTCTCTTTACAT-AAGCCC  96
      | |||||| |||||||||||| | ||||| ||||||||||||| ||||||
seq2  TTTCACCCATTTCTCGTGATTGCAAGTGTGGTTCTCTTTACATAAAGCCC  100

seq1  ATCACAG-CCACTACCCAGCAA-CAGCATGCCTGGTG-CCCATCTGCTGG  143
      ||||||| |||||| ||||||| ||||||| |||||| ||||||||||||
seq2  ATCACAGACCACTA-CCAGCAACCAGCATG-CTGGTGACCCATCTGCTGG  148

seq1  CTTCA-TGGAGCAGCCATTACCACAGTGGAAGGTGTGG-GGAGCATCAAA  191
      ||||| ||||||||||||||||||||||||| |||||| | |||||||||
seq2  CTTCATTGGAGCAGCCATTACCACAGTGGAAAGTGTGGAGAAGCATCAAA  198

seq1  AAGAGGGTGCACCCAGTGCAGGTAA-GAGCCTGTGGTGGGGACCGGATGG  240
      ||||||||||||||||||||| ||| ||||||||||||| ||||||||||
seq2  AAGAGGGTGCACCCAGTGCAGTTAAGGAGCCTGTGGTGGAGACCGGATGG  248

seq1  CGGTACAGG-CATGGT-CCATAGGCCGTCCGTTCTCCTGAGATCTCCGGG  288
      ||||||||| |||||| ||||||||||||||||||||||||||||||| |
seq2  CGGTACAGGACATGGTCCCATAGGCCGTCCGTTCTCCTGAGATCTCCGAG  298

seq1  CTTGAAAGCCTTCACGCTTTTGCATTCTAGTGTTCTAAGCATCCATGATT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGCCTTCACGCTTTTGCATTCTAGTGTTCTAAGCATCCATGATT  348

seq1  CATAGCCAGGAATCTTCTTCAGAGATCTCTTCAAGAGGCTGTCCTTGACT  388
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  CATAGCCAGAAATCTTCTTCAGAGATCTCTTCAAGAGACTGTCCTTGACT  398

seq1  GTAAGACATCTTACTTAACCCAAGAGACCTTCATTCTTGCCGGTAACTCA  438
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTAAGACATCTTACTTAAACCAAGAGACCTTCATTCTTGCCGGTAACTCA  448

seq1  AGTACAAGAGCTGTCTGACTCAAGGAGAAAATGAAGGAGAAAACTGAAGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGAGCTGTCTGACTCAAGGAGAAAATGAAGGAGAAAACTGAAGC  498

seq1  TGGTAGAAAGTAGGCTTCCTCAGGTCTCACTATTGCAAAGTATGGGATGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAAGTAGGCTTCCTCAGGTCTCACTATTGCAAAGTATGGGATGC  548

seq1  TAATGAGAGTTCAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGAGTTCAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  598

seq1  GTGTGTACTCCAGCAACATCTCCCAAATGCCAAAGACTGGCTGCTCACAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTCCAGCAACATCTCCCAAATGCCAAAGACTGGCTGCTCACAT  648

seq1  TTACAAGGCTTGTCAAAGAAGAGTCAGCGTTGTTTTCTTATGCTTGAGCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGCTTGTCAAAGAAGAGTCAGCGTTGTTTTCTTATGCTTGAGCA  698

seq1  GGAACTTTCGCTGGGGGAGTTTCAAGGGCAGAGTGTAGATGGAGAAAACT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTCGCTGGGGGAGTTTCAAGGGCAGAGTGTAGATGGAGAAAACT  748

seq1  GAAGTTTCTGCCTTAGGACTCCTTCCCTGAAAGGTTACAGCTGTAACATG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCTGCCTTAGGACTCCTTCCCTGAAAGGTTACAGCTGTAACATG  798

seq1  AAAGCTTCCTTGACTGTCTACTGCCCTCAACAGAGACATGGTCAAATCAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCCTTGACTGTCTACTGCCCTCAACAGAGACATGGTCAAATCAT  848

seq1  TCAGCCATGGGCTCAAACAGCCATGCTCTGTGGACGGTACCCAGTCTTCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATGGGCTCAAACAGCCATGCTCTGTGGACGGTACCCAGTCTTCA  898

seq1  CCTCTCATCACTCTACATATCCAGGCTTCCTTCTGTGCTGAGTAGATTTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATCACTCTACATATCCAGGCTTCCTTCTGTGCTGAGTAGATTTA  948

seq1  ACTTTCTGGGATCTTTCTGGGATGAGAGTCACATTTGTTTAGTGATTGCC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGGGATCTTTCTGGGATGAGAGTCACATTTGTTTAGTGATTGCC  998

seq1  CTGGAGCAGGCTTGGCCTGGGCTGCAAAAGCCTCTTTTAAATACGCAGGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGGCTTGGCCTGGGCTGCAAAAGCCTCTTTTAAATACGCAGGC  1048

seq1  ATTCTGCCCATTGTCTTTAAACACACCCACAGCTGAATTC  1078
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCCATTGTCTTTAAACACACCCACAGCTGAATTC  1088