BAC Information

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BAC

Clone NameB6Ng01-011M08
Chromosome10 (Build37)1 (Build37)
Map Location 104,053,903 - 104,054,36345,373,024 - 45,374,050
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011M08.bB6Ng01-011M08.g
ACCDH847060DH847061
length9291,025
definitionDH847060|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M08, 5' end.DH847061|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(45,373,024 - 45,374,050)
sequence
gaattctcaactgaggaataccaaatggctaagaggcaccttaaaaaatg
ttcaacatccttaatcatcaggaaaatgtaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaaaatcaaaaattcaggtgacagc
agattctggagaggatgtggagaaagaggaacactgctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattagtcatagttctacctgacgatccagcaataccactcctggga
atatacccagaagatgctccaccatgtaacaagtacacctgctccacttt
gctcatagcagctttatttataatagccagaagctgcaaagagcccagat
gtccctcaacagagaaaaggatacagaaaatgtggtatatttacacaatg
gagtactactcaactattaaaaacaatgaatttaggaaattcgtagacaa
atggatggatcaggaggatatgatcctaagtgaggtaacccatactgaaa
agaacacaatgatatgtattcactgataaatggatattagcccagaagct
cagactcctttttagaagggggaaccatatacccatggaaggagtacaga
aacaaagttcagagtagagccttaaagaatgaccatccagagactgccct
acttggggactgtattagtcagggttctctagagtcacagaacttatgga
cagtctctagatagtaaaggaatttattgatgacttacagtcggcaaccc
aattcccaacaattgttcagtcgcagctgttaatggaagtccaaggatct
agcagttactcagtctcacgcagcaagcaggcgaaggagcaagagctaga
gcaatagctagactcccttcttcaatgtc
gaattcagatttgaatctagtatgcttttctaaaatctgatactcctaac
tccattatgtttttactgctttcaaggatactatagaatgaaagagacct
gtttcagtgccctgtcccagatggtttgtgaactctgtaccctctcgagt
atgcagacagatttttttttttttaaggaataacagtgatctccaaaatg
tcttttttttctctaatcttaaaatgggaagataccatctggagtggaat
cctactgtttatttctcttgaccttatgaaaaaggcttgtatttccaagg
ccaccctgatgggatccagaccaccagcaagatgaatgtgtgacttggaa
gccaggcactaagactgacaaaaacaaacataaacattcttcatcagata
catagatgtatttaggatggctaaggcactactattcaaaaactatagtt
tttgcttgatttgcatttgttaacttctaacttgagcacaagtctccttt
gaatgctacttgggcactataaattctgtgcaacatcataaagtgtttct
gtgagaaacatagcttgttggcctctacaataacaaacataagaacaaaa
aatgtctcacaactatgttaactgagaaagtcatccttcaatgctaatta
tcaaagctaatttaactattaataagttttggattagttgtggcaatttc
ttctttggggcaattttagtatttcttccatttgaactttccgttttgtt
cattgagattacatttgaaatggcagggcttgacctcagccatggaaaaa
gcaaggctttgattagttaatctgaaaggaatcccacttggggctatgtt
ttttgttaggcacagacagacttctagtggttaatgtaactctccaaagt
gcagctaacaaacgactgctgtgcagagctagctcggagtttccactgct
ttcctgacagcaaagtttctttctttaaacttttggataaaaaaaaaaca
atgtggatttttttttttcctaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-011M08.b_48_518 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||| ||||||||||||||||
seq2  TTTAATAGTTGAGTAGTACTCCATTGTGTAAATATACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      ||  || |||||||||||| |||||||| ||||| ||||| |||||||||
seq2  TCCTTTTCTCTGTTGAGGGACATCTGGGCTCTTTGCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||| ||||||||||  | ||||||||| |||| ||| ||||  | 
seq2  ATAAATAAAGCTGCTATGAGCAAAGTGGAGCAGGTGTACTTGTTACATGG  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||| ||||||||||| ||||| ||||| || |||||||||||||| || |
seq2  TGGAGCATCTTCTGGGTATATTCCCAGGAGTGGTATTGCTGGATCGTCAG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||| |||||| | |||||||||| ||||| |||||| ||||||||||||
seq2  GTAGAACTATGACTAATTTTCTGAGGAACCACCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGCAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||| |||| ||||||||||||||||||||||||| |||||||
seq2  TCCACATCCTCTCCAGAATCTGCTGTCACCTGAATTTTTGATTTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTACATTTTC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||| |||||| |||  |||||| |
seq2  CTGATGATTAAGGATGTTGAACATTTTTTAAGGTGCCTCTTAGCCATTTG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      ||||||||||| |||||||||
seq2  GTATTCCTCAGTTGAGAATTC  471

seq1: chr1_45373024_45374050
seq2: B6Ng01-011M08.g_66_1090 (reverse)

seq1  GCTTAGGAAAAAAAAAAATCCACATTGTTTTTTTTTTTAATCCAAAAGTT  50
      |||||||||||||||||||||||||||||||||||||  ||||||||| |
seq2  GCTTAGGAAAAAAAAAAATCCACATTGTTTTTTTTTT--ATCCAAAAG-T  47

seq1  TTAAAGGAGGAAACTTTGCCTGTCAGGAAAGCAGTGGAAACTCTGAGCTA  100
      |||||| | ||||||||| |||||||||||||||||||||||| ||||||
seq2  TTAAAGAAAGAAACTTTG-CTGTCAGGAAAGCAGTGGAAACTCCGAGCTA  96

seq1  GCTCTGCACAGCAGTCGTTTGTTAGCTGCACTTTGGAGAGTTACATTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCACAGCAGTCGTTTGTTAGCTGCACTTTGGAGAGTTACATTAAC  146

seq1  CACTAGAAGTTCTGTCTGTGCCTAAC-AAAAACATAG-CCCAAGT-GGAT  197
      ||||||||| |||||||||||||||| |||||||||| ||||||| ||||
seq2  CACTAGAAG-TCTGTCTGTGCCTAACAAAAAACATAGCCCCAAGTGGGAT  195

seq1  TCCTTTCAGATTAACTAATCAAAGCCTTGCTTTTTCCATGGCTGAGGTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAGATTAACTAATCAAAGCCTTGCTTTTTCCATGGCTGAGGTCA  245

seq1  AGCCCTGCCATTTCAAATGTAATCTCAATGAACAAAACGGAAAGTTCAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCCATTTCAAATGTAATCTCAATGAACAAAACGGAAAGTTCAAA  295

seq1  TGGAAGAAATACTAAAATTGCCCCAAAGAAGAAATTGCCACAACTAATCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAATACTAAAATTGCCCCAAAGAAGAAATTGCCACAACTAATCC  345

seq1  AAAACTTATTAATAGTTAAATTAGCTTTGATAATTAGCATTGAAGGATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATTAATAGTTAAATTAGCTTTGATAATTAGCATTGAAGGATGA  395

seq1  CTTTCTCAGTTAACATAGTTGTGAGACATTTTTTGTTCTTATGTTTGTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGTTAACATAGTTGTGAGACATTTTTTGTTCTTATGTTTGTTA  445

seq1  TTGTAGAGGCCAACAAGCTATGTTTCTCACAGAAACACTTTATGATGTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGGCCAACAAGCTATGTTTCTCACAGAAACACTTTATGATGTTG  495

seq1  CACAGAATTTATAGTGCCCAAGTAGCATTCAAAGGAGACTTGTGCTCAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATTTATAGTGCCCAAGTAGCATTCAAAGGAGACTTGTGCTCAAG  545

seq1  TTAGAAGTTAACAAATGCAAATCAAGCAAAAACTATAGTTTTTGAATAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTTAACAAATGCAAATCAAGCAAAAACTATAGTTTTTGAATAGT  595

seq1  AGTGCCTTAGCCATCCTAAATACATCTATGTATCTGATGAAGAATGTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTAGCCATCCTAAATACATCTATGTATCTGATGAAGAATGTTTA  645

seq1  TGTTTGTTTTTGTCAGTCTTAGTGCCTGGCTTCCAAGTCACACATTCATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTGTCAGTCTTAGTGCCTGGCTTCCAAGTCACACATTCATC  695

seq1  TTGCTGGTGGTCTGGATCCCATCAGGGTGGCCTTGGAAATACAAGCCTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTGGTCTGGATCCCATCAGGGTGGCCTTGGAAATACAAGCCTTT  745

seq1  TTCATAAGGTCAAGAGAAATAAACAGTAGGATTCCACTCCAGATGGTATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGGTCAAGAGAAATAAACAGTAGGATTCCACTCCAGATGGTATC  795

seq1  TTCCCATTTTAAGATTAGAGAAAAAAAAGACATTTTGGAGATCACTGTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTTAAGATTAGAGAAAAAAAAGACATTTTGGAGATCACTGTTA  845

seq1  TTCCTTAAAAAAAAAAAAATCTGTCTGCATACTCGAGAGGGTACAGAGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAAAAAAAAAAATCTGTCTGCATACTCGAGAGGGTACAGAGTT  895

seq1  CACAAACCATCTGGGACAGGGCACTGAAACAGGTCTCTTTCATTCTATAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCATCTGGGACAGGGCACTGAAACAGGTCTCTTTCATTCTATAG  945

seq1  TATCCTTGAAAGCAGTAAAAACATAATGGAGTTAGGAGTATCAGATTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGAAAGCAGTAAAAACATAATGGAGTTAGGAGTATCAGATTTTA  995

seq1  GAAAAGCATACTAGATTCAAATCTGAATTC  1027
      ||||||||||||||||||||||||||||||
seq2  GAAAAGCATACTAGATTCAAATCTGAATTC  1025