BAC Information

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BAC

Clone NameB6Ng01-011O11
Chromosome1 (Build37)
Map Location 75,154,986 - 75,309,493
singlet/doubletdoublet
Overlap geneZfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286
Downstream geneDes, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011O11.bB6Ng01-011O11.g
ACCDH847157DH847158
length1,083855
definitionDH847157|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O11, 5' end.DH847158|Mus musculus domesticus DNA, BAC clone: B6Ng01-011O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,154,986 - 75,156,276)(75,308,642 - 75,309,493)
sequence
gaattccaggacaggacagccaaggctacacagagaatccctgaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagagagagaaaggaaggaaaaggaaagaaaagaaaagaaaagaaa
ggaaataaaacaaaattaagaagttagggatacatctcagtggtagaggg
tgtgcttagcatgcccaagggctaggttccgtcctaaataaattcatgag
tgaataaatgaatcatcctcaaagaaaattaattccatgaactgaatata
catacatactatgtatagactggtgttggtggggctcaaacccaagacct
aacttaatgttcggcaagtattctactactgactgatattcttagcgcta
gtcaatggactattaatacagcacattatatgcagggccttcccagaagt
tgggtgtttactttcagagcttagcaacagctctacagctcccattaaaa
ccaccaggatagccaggcagtggtgccgcacacctttaatcccaacactt
gggaggcagaggcaggcagatttctgaatttgtgaccatccaggtctaca
gagtgagttccaggacagttgggactacacagagaaaccctgtctggaaa
aacaaacaaatgacagaaaaacaaaaaacaaaaaaccagcaggatgtaga
cagtaagccactaaagagttctgacttggcaaacactcatttttattaag
ataagctaccataacagctgatatctaaaagaaaagttagaagttgcaaa
atacagagacttactaacaaagacattattcacttctgtaccaagagtgc
agataactgtctgggggttagtcacctttacttccacttttcctgacact
tgttcaccatctcagggaaggggcttgtccactgccgtttgttgttaatt
ggttacaagcttaatgttggatgcaccagtaattttgaagcaaaacattt
ttctcaaaagcaatgtaaaactgaattatgtagccaaacctaaccgccag
ctcttgaggtttgccccatctaaggatagtctg
gaattcattattgctcacattcacagaacccagtgtggccacattcagtt
acaaaggaaactgggaatgctgtctctagctgggtagttagttatatagc
tttaacacctgcctagccctgggtgtaaatgtgggggaccagtgtggaaa
cctccatcagtaaatgctatttctagtccatgaatgactgggaattagtc
tggccctagtctactgtcatatgttcagaaaggagagtctctaaggatac
ttctctctaccaagtgactcaggtggatcccgggccatcctgaacacttt
tacagtccaggcgcatgtccagattcccacagtcaaatctctgccatctc
caggtggggtcagagagtgcacaaggagcacagtccctgctgacggagct
gatactacggcgcatctcagcctcacctcagcgtctgactgccttcgagg
aagccatacctaagtccttcatgatcagtgcagacatggcccatgctgtg
cacccaaactactcgtgagtcttcataccagacagtacttatgctagaga
cgcggcatagcccacttgcaggctagttcctgggcctgcctttctccatc
tgctgggaggttcaggagtcttccatttgattattccaaggccagactta
tgcaaagccatgtgttgcctaagccgggtgtatatattaagtaagctttg
tctgtgaccttgcttcctttcatggctagaatctgcctgaatcgttgttt
ctgatgcccttgaggacagtcagggctaggtgggaaagagtgccatgatc
cattagtgccttctgccttggaagggggtagtgtgttgttgacacccccc
accat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75154986_75156276
seq2: B6Ng01-011O11.b_47_1129

seq1  GAATTCCAGGACAGGACAGCCAAGGCTACACAGAGAATCCCTGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGGACAGCCAAGGCTACACAGAGAATCCCTGAAAGAAA  50

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  100

seq1  AAGAAAGAGAGAGAAAGGAAGGAAAAGGAAAGAAAAGAAAAGAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGAGAGAAAGGAAGGAAAAGGAAAGAAAAGAAAAGAAAAGAAA  150

seq1  GGAAATAAAACAAAATTAAGAAGTTAGGGATACATCTCAGTGGTAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAACAAAATTAAGAAGTTAGGGATACATCTCAGTGGTAGAGGG  200

seq1  TGTGCTTAGCATGCCCAAGGGCTAGGTTCCGTCCTAAATAAATTCATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAGCATGCCCAAGGGCTAGGTTCCGTCCTAAATAAATTCATGAG  250

seq1  TGAATAAATGAATCATCCTCAAAGAAAATTAATTCCATGAACTGAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATGAATCATCCTCAAAGAAAATTAATTCCATGAACTGAATATA  300

seq1  CATACATACTATGTATAGACTGGTGTTGGTGGGGCTCAAACCCAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACTATGTATAGACTGGTGTTGGTGGGGCTCAAACCCAAGACCT  350

seq1  AACTTAATGTTCGGCAAGTATTCTACTACTGACTGATATTCTTAGCGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATGTTCGGCAAGTATTCTACTACTGACTGATATTCTTAGCGCTA  400

seq1  GTCAATGGACTATTAATACAGCACATTATATGCAGGGCCTTCCCAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGGACTATTAATACAGCACATTATATGCAGGGCCTTCCCAGAAGT  450

seq1  TGGGTGTTTACTTTCAGAGCTTAGCAACAGCTCTACAGCTCCCATTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTACTTTCAGAGCTTAGCAACAGCTCTACAGCTCCCATTAAAA  500

seq1  CCACCAGGATAGCCAGGCAGTGGTGCCGCACACCTTTAATCCCAACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGATAGCCAGGCAGTGGTGCCGCACACCTTTAATCCCAACACTT  550

seq1  GGGAGGCAGAGGCAGGCAGATTTCTGAATTTGTGACCATCCAGGTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCAGATTTCTGAATTTGTGACCATCCAGGTCTACA  600

seq1  GAGTGAGTTCCAGGACAGTTGGGACTACACAGAGAAACCCTGTCTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGTTGGGACTACACAGAGAAACCCTGTCTGGAAA  650

seq1  AACAAACAAATGACAGAAAAACAAAAAACAAAAAACCAGCAGGATGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAATGACAGAAAAACAAAAAACAAAAAACCAGCAGGATGTAGA  700

seq1  CAGTAAGCCACTAAAGAGTTCTGACTTGGCAAACACTCATTTTTATTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCCACTAAAGAGTTCTGACTTGGCAAACACTCATTTTTATTAAG  750

seq1  ATAAGCTACCATAACAGCTGATATCTAAAAG-AAAGTTAGAAGTTGCAAA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAAGCTACCATAACAGCTGATATCTAAAAGAAAAGTTAGAAGTTGCAAA  800

seq1  ATACAGAGACTTACTAACAAGGACATTATTCACTTCTGTACCAAGAGTGC  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATACAGAGACTTACTAACAAAGACATTATTCACTTCTGTACCAAGAGTGC  850

seq1  AGATTACTGTCT-GGGGTTAGTCACCTTTACTTCCACTTTTCCTGACTAC  898
      |||| ||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AGATAACTGTCTGGGGGTTAGTCACCTTTACTTCCACTTTTCCTGAC-AC  899

seq1  TTGTTCTACCATCTTCAGGGAAGTGGCTTGTCCACTTGCTGTTTTGTTTG  948
      |||||| |||||| ||||||||| ||||||||||| ||| ||||   |||
seq2  TTGTTC-ACCATC-TCAGGGAAGGGGCTTGTCCAC-TGCCGTTT--GTTG  944

seq1  TTAATTTGTTTACAAGGCTGAGTGCTGGATGTCACAAGTAATTTTGAAGC  998
      |||| ||| |||||| ||| | || |||||| ||| ||||||||||||||
seq2  TTAA-TTGGTTACAA-GCTTAATGTTGGATG-CACCAGTAATTTTGAAGC  991

seq1  AGAAACATTTTTTCATCGAAATGCATAGTAAGAACTGGATATGGTAGTCC  1048
      | ||||||||||   || ||| |||  |||| ||||| ||   |||| ||
seq2  A-AAACATTTTT--CTC-AAAAGCAATGTAA-AACTGAATTATGTAG-CC  1035

seq1  AAGCCTATACGGCCAGCACTTGAGGTTTGCCACAAATCTAAGGCTAGTCT  1098
      || |||| || |||||| ||||||||||||| |  |||||||| ||||||
seq2  AAACCTA-ACCGCCAGCTCTTGAGGTTTGCCCC--ATCTAAGGATAGTCT  1082

seq1  GGGCTTCATAGCATGGCTATTCCAAACAAAGCAAACAAACAAACAAACAA  1148
      |                                                 
seq2  G-------------------------------------------------  1083

seq1  AACTGAGCTGAGCAACAGTGCTCTCCTTGAACTCCACCACTTCAGAGACA  1198
                                                        
seq2  --------------------------------------------------  1083

seq1  GAGGAAGGTAGAACTCTGGGAGTTCAAGACCAGGTCTTGAACAGGCCTAC  1248
                                                        
seq2  --------------------------------------------------  1083

seq1  ATGGTAAGTTCCAGGCTTGCCAGGGTTACAGTGAGATAGTCTG  1291
                                                 
seq2  -------------------------------------------  1083

seq1: chr1_75308642_75309493
seq2: B6Ng01-011O11.g_69_922 (reverse)

seq1  TGGTGGGGGCTGTCAACAGC-CACTA-CCCCTTCCAAGGCAGATGGCACT  48
      ||||||||| |||||||| | ||||| |||||||||||||||| ||||||
seq2  TGGTGGGGGGTGTCAACAACACACTACCCCCTTCCAAGGCAGAAGGCACT  50

seq1  AATGGATCATGGCACTCTTTCCCACCTAGCCCTGCGTGTCCTCAAGGGCA  98
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  AATGGATCATGGCACTCTTTCCCACCTAGCCCTGACTGTCCTCAAGGGCA  100

seq1  TCAGAACAAACGATTCAGGCAGATTCTAGCCATGAAAGGAAGCAAGGTCA  148
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAACGATTCAGGCAGATTCTAGCCATGAAAGGAAGCAAGGTCA  150

seq1  CAGACAAAGCTTACTTAATATATACACCCGGCTTAGGCAACACATGGCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAAGCTTACTTAATATATACACCCGGCTTAGGCAACACATGGCTT  200

seq1  TGCATAAGTCTGGCCTTGGAATAATCAAATGGAAGACTCCTGAACCTCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGTCTGGCCTTGGAATAATCAAATGGAAGACTCCTGAACCTCCC  250

seq1  AGCAGATGGAGAAAGGCAGGCCCAGGAACTAGCCTGCAAGTGGGCTATGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGGAGAAAGGCAGGCCCAGGAACTAGCCTGCAAGTGGGCTATGC  300

seq1  CGCGTCTCTAGCATAAGTACTGTCTGGTATGAAGACTCACGAGTAGTTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTCTCTAGCATAAGTACTGTCTGGTATGAAGACTCACGAGTAGTTTG  350

seq1  GGTGCACAGCATGGGCCATGTCTGCACTGATCATGAAGGACTTAGGTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACAGCATGGGCCATGTCTGCACTGATCATGAAGGACTTAGGTATG  400

seq1  GCTTCCTCGAAGGCAGTCAGACGCTGAGGTGAGGCTGAGATGCGCCGTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCGAAGGCAGTCAGACGCTGAGGTGAGGCTGAGATGCGCCGTAG  450

seq1  TATCAGCTCCGTCAGCAGGGACTGTGCTCCTTGTGCACTCTCTGACCCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTCCGTCAGCAGGGACTGTGCTCCTTGTGCACTCTCTGACCCCA  500

seq1  CCTGGAGATGGCAGAGATTTGACTGTGGGAATCTGGACATGCGCCTGGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGATGGCAGAGATTTGACTGTGGGAATCTGGACATGCGCCTGGAC  550

seq1  TGTAAAAGTGTTCAGGATGGCCCGGGATCCACCTGAGTCACTTGGTAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGTGTTCAGGATGGCCCGGGATCCACCTGAGTCACTTGGTAGAG  600

seq1  AGAAGTATCCTTAGAGACTCTCCTTTCTGAACATATGACAGTAGACTAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATCCTTAGAGACTCTCCTTTCTGAACATATGACAGTAGACTAGG  650

seq1  GCCAGACTAATTCCCAGTCATTCATGGACTAGAAATAGCATTTACTGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACTAATTCCCAGTCATTCATGGACTAGAAATAGCATTTACTGATG  700

seq1  GAGGTTTCCACACTGGTCCCCCACATTTACACCCAGGGCTAGGCAGGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTCCACACTGGTCCCCCACATTTACACCCAGGGCTAGGCAGGTGT  750

seq1  TAAAGCTATATAACTAACTACCCAGCTAGAGACAGCATTCCCAGTTTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTATATAACTAACTACCCAGCTAGAGACAGCATTCCCAGTTTCCT  800

seq1  TTGTAACTGAATGTGGCCACACTGGGTTCTGTGAATGTGAGCAATAATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTGAATGTGGCCACACTGGGTTCTGTGAATGTGAGCAATAATGA  850

seq1  ATTC  852
      ||||
seq2  ATTC  854