BAC Information

Click to search

BAC

Clone NameB6Ng01-012K02
Chromosome1 (Build37)
Map Location 135,940,242 - 135,941,411
singlet/doubletsinglet
Overlap geneFmod
Upstream genePik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358
Downstream geneBtg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012K02.bB6Ng01-012K02.g
ACCDH847671DH847672
length1,2111,146
definitionDH847671|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K02, 5' end.DH847672|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccaatttctgagtatatctatcccaattatacattctggaac
tggggaaatcaccacaggatgtgtccggggacctactggacctactgtga
gtcggacatcagtcaaaactccattaatcacctgccctccataagcccct
actttaactggagggccacaatgtttcttgggatcccctgggatcagtgt
caactcagaaccagtatccagcagaccccgaaaagtctgattatttcctt
ttccccagtgtacagttacccttgtaaaaggccgtaggtccctctgggga
agaactggagaaagggtaacagcaaaacctttgggtgtcttatcaagatc
cttcctcagcggaacctggccaccccttcattcaaggggttctggatctg
caaactgtctcaagtctggaaattgattcactggccgagattgctgttta
ccacgatctaatgtagcctttctttcatttggctgtttaccacgatctaa
tgtagcctttttttcatttgtttgaaaatttttctgcttatacagatcaa
acaaatatgcagtaggcttcctatgtatttcattcctggaaacaccatga
ttggttagccagtaccaaaggtccaaccgagtcatgccattataaatttc
acctctcctgtgctgaccattactgggtacgttattataaacattctttt
gtctatgctgtcccaggagggagagaatctggagaggtttcaatagttga
aagtgctggtggatcaacaagccaattccagtattttaaaagattcatcc
ttgtacttctgttactctagaaccactcctggtaccaacttctgtattag
tcagggttctctagagtcacagaacttatggatagtctctaaatagtaaa
ggaatttattgatgacttacagtcggcagccgaattcccaacaattgttc
agtcgcagctgtgaatggaagtccaaggatctagcagttactcagtctca
cgcagcaagcagcaaagagcagagcagagctagactcccttctcatgtct
tatattgtcctccagcaaaggtgtagcccagataaaggtgtgttccacca
cacttcatcagatgaaagcctagcccagataagggtgttcttaactcggg
attcaacttctgatctagcccatgctagatctcgatcaaatcgatagagt
ctcaggcttcg
gaattcctgtaatggcagtcagtgaccatgttggggtaaggtgtggtaag
ggggacccaacagaacaggagctccaggccttcaggaaacaggacagcac
acacgcgcacgcgcacacgcacgcgcacacacacacacctctccctccaa
tgcctccctcagtttttccaacctggcagaagaggaatgatggagcagac
agagccacggaatgttagtcagaagctgtgggatccaatggcgtggggcg
ggattggaatttggaaagactcatgtcagtatttaatctggcctggaaaa
atgtctgccggggcctcctgacagaagccctgacctactgtgggcttgag
gaaggtgtgcggaggggtgctcttagagcccatgaatagctgatctagat
gctgtgtctagtggctcacaggtatgggaacttggatgttagcacagtct
gcaggctccatgtccagacctctggctcagtcccaaataggactgaaagt
ggcaaatgacgttcagccacctcgtgtgccccctggccctgtacacagta
acagactcaagccccacctgcactatacccactaaatctactcccgagga
ccagaagggaacaccaaaaagcgtctcagagcttctgctcctcctcaaag
tatatttcacagccccactctcccgggacctaactcttctccaggcctga
attctgtgtttgagggcagtgcaacatggtttgctacagcacaccaaccc
atctcgggcagttcttaacggagactaaaagcaactgatggtgttaattc
aaaaccaccttcctccacagcctcggccttctgtgccgtctttcttggaa
accttcatcttcacactccctccttcccccgggaggaacccctattgtct
ctaaaattgggttagctcctaccgatcaattctgattatagttccaggca
cctgtgcagatgagggacgtgtctgacgggacaagccagccctgtctcac
ttggctcgaggctgccagcatggtatctgtgaatgatggtcacgcagacc
ctgcccctctgccacttatctacagttcacagaaaatgacaatagatgat
ctttaggagccagtagaaggagcagcctgatggctccggtgaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135940242_135941411
seq2: B6Ng01-012K02.g_63_1208

seq1  GAATTCCTGTAATGGCAGTCAGTGACCATGTTGGGGTAAGGTGTGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAATGGCAGTCAGTGACCATGTTGGGGTAAGGTGTGGTAAG  50

seq1  GGGGACCCAACAGAACAGGAGCTCCAGGCCTTCAGGAAACAGGACAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCCAACAGAACAGGAGCTCCAGGCCTTCAGGAAACAGGACAGCAC  100

seq1  ACACGCGCACGCGCACACGCACGCGCACACACACACACCTCTCCCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCGCACGCGCACACGCACGCGCACACACACACACCTCTCCCTCCAA  150

seq1  TGCCTCCCTCAGTTTTTCCAACCTGGCAGAAGAGGAATGATGGAGCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCTCAGTTTTTCCAACCTGGCAGAAGAGGAATGATGGAGCAGAC  200

seq1  AGAGCCACGGAATGTTAGTCAGAAGCTGTGGGATCCAATGGCGTGGGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACGGAATGTTAGTCAGAAGCTGTGGGATCCAATGGCGTGGGGCG  250

seq1  GGATTGGAATTTGGAAAGACTCATGTCAGTATTTAATCTGGCCTGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAATTTGGAAAGACTCATGTCAGTATTTAATCTGGCCTGGAAAA  300

seq1  ATGTCTGCCGGGGCCTCCTGACAGAAGCCCTGACCTACTGTGGGCTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCCGGGGCCTCCTGACAGAAGCCCTGACCTACTGTGGGCTTGAG  350

seq1  GAAGGTGTGCGGAGGGGTGCTCTTAGAGCCCATGAATAGCTGATCTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTGCGGAGGGGTGCTCTTAGAGCCCATGAATAGCTGATCTAGAT  400

seq1  GCTGTGTCTAGTGGCTCACAGGTATGGGAACTTGGATGTTAGCACAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCTAGTGGCTCACAGGTATGGGAACTTGGATGTTAGCACAGTCT  450

seq1  GCAGGCTCCATGTCCAGACCTCTGGCTCAGTCCCAAATAGGACTGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTCCATGTCCAGACCTCTGGCTCAGTCCCAAATAGGACTGAAAGT  500

seq1  GGCAAATGACGTTCAGCCACCTCGTGTGCCCCCTGGCCCTGTACACAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGACGTTCAGCCACCTCGTGTGCCCCCTGGCCCTGTACACAGTA  550

seq1  ACAGACTCAAGCCCCACCTGCACTATACCCACTAAATCTACTCCCGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCAAGCCCCACCTGCACTATACCCACTAAATCTACTCCCGAGGA  600

seq1  CCAGAAGGGAACACCAAAAAGCGTCTCAGAGCTTCTGCTCCTCCTCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGGAACACCAAAAAGCGTCTCAGAGCTTCTGCTCCTCCTCAAAG  650

seq1  TATATTTCACAGCCCCACTCTCCCGGGACCTAACTCTTCTCCAGGCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCACAGCCCCACTCTCCCGGGACCTAACTCTTCTCCAGGCCTGA  700

seq1  ATTCTGTGTTTGAGGGCAGTGCAACATGGTTTGCTACAGCACACCAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTTTGAGGGCAGTGCAACATGGTTTGCTACAGCACACCAACCC  750

seq1  ATCTCGGGCAGTTCTTAACGGAGACTAAAAGCAACTGATGGTGTTAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGGGCAGTTCTTAACGGAGACTAAAAGCAACTGATGGTGTTAATTC  800

seq1  AAAACCACCTTCCTCCACAGCCTCGGCCTTCTGTGCCGTCTTTCTTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACCTTCCTCCACAGCCTCGGCCTTCTGTGCCGTCTTTCTTGGAA  850

seq1  ACCTTCATCTTCACACTCCCTCCTTCCCCCGGGAGGAACCCCTATTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATCTTCACACTCCCTCCTTCCCCCGGGAGGAACCCCTATTGTCT  900

seq1  CTAAAAATTGGGTTAGCTCCTACCGATCAATTCTGATTATAGTTCCAGGC  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-AAAATTGGGTTAGCTCCTACCGATCAATTCTGATTATAGTTCCAGGC  949

seq1  ACCTGTGCAGGATGAGGGACGTGTCTGACGGGACAAAGCCAGCCCTGTTC  1000
      ||||||||| |||||||||||||||||||||||| |||||||||||| ||
seq2  ACCTGTGCA-GATGAGGGACGTGTCTGACGGGAC-AAGCCAGCCCTG-TC  996

seq1  TACACTTGGCTCGAGGCTGCCAGCATGGGTATCTGTGAATGATGGTCACG  1050
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  T-CACTTGGCTCGAGGCTGCCAGCAT-GGTATCTGTGAATGATGGTCACG  1044

seq1  CCAGACCCTGCCCCCTCCTGCCACCTTATCTAAACCAGTTCACAGAAAAT  1100
       |||||||||||||   |||||| ||||||||   |||||||||||||||
seq2  -CAGACCCTGCCCC--TCTGCCA-CTTATCTA---CAGTTCACAGAAAAT  1087

seq1  GACAATAAGAGTGGTCTTCTAGGGAGCCAAGTAGAAGGAAGGCAGCCCTG  1150
      |||||| ||| || |||| || |||||| ||||||||||  |||| ||||
seq2  GACAAT-AGA-TGATCTT-TA-GGAGCC-AGTAGAAGGA--GCAG-CCTG  1129

seq1  ATGGCTTCCGGTGTGAACTT  1170
      ||||| ||||  ||||||||
seq2  ATGGC-TCCG--GTGAACTT  1146