BAC Information

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BAC

Clone NameB6Ng01-012P17
Chromosome1 (Build37)
Map Location 141,139,639 - 141,296,629
singlet/doubletdoublet
Overlap geneCrb1
Upstream geneLOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b
Downstream geneZbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012P17.bB6Ng01-012P17.g
ACCDH847919DH847920
length1,112338
definitionDH847919|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P17, 5' end.DH847920|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,139,639 - 141,140,762)(141,296,292 - 141,296,629)
sequence
gaattccagagtctggctgtttaatctgacatcttgaacacagcctttga
agaagccaccataaacttcagtcttctctctgtcaggtaagccaccaatg
aagatgacgtctcctcttcgaattgtccatgtaggaacagaaatgaatcc
taggttttgtgaagactgatacagttcaatttcatttggtttgattctca
aagatattaagtgaacatttccatcactgagaaaaaagtttaccatgaac
ttgggagagcctggagtctgcagtgctaggctgccgtgctctagccagac
actgacatactggtaagtactattttccaaagccagaagtaagcccaggg
gttgacgtgttcggacaaacattgaaagactgaagttctgtccataatta
tcattaacactaaaggccgcatatcctgtggagtcatcttggccaaatct
tcccgctacatactctgcaatgtccaaagagggaaggagaaaaaaaaatg
tctttatattcaaatgtaagaagaaatgggagatggaactttcacaggca
tatacacaaccagacactttctcaagccccagacagtcttaatctctaag
agtgaagtttcctcatttttctgagctcctgagattatcatgaaaatcac
tatattttgtattataataggcacctgtcagttacaaaagagaaaaaaca
aaacaaaaacaaggcttccgaaatgatcaactaagcatccctgtctcctc
tctaaaatccagacgacacctctgagtttgatcttggtgaaagaaaggtg
tggccgtaagcacaccgtgtacccttggggcacactgcccagttcatctc
tgctgtgagtgtgaaggcctgctgaagcagacatgttgtgaagttgagct
gcttcataggaagacagatcatagcaagattatccagctcagttggggag
tcactccgtgtagtaggatctcttggggaaggagatttaggacggtgtag
tgttcagttgttactgacggaggtcagtgtagagggctgatgcttcctat
tgaatctgcatgccagaataattgctgagctcgacaaccctgtcatggaa
gatttgctgctt
tattggtccattgccaggaaggtaggcacggggctagattccaaggagac
tagaatcaaagcaagatgtattgcaaagttggacagagtacactatgaaa
gcattctaccagtatttgacagcctacaaagaacttttggaaatggtgaa
aacctgctgatggattgccattagttccaaggagaaagtactgatccaaa
gtaagctagatgcatatgtagcagaggatggccttgtcaggcgccaatgg
gaggagagatccatggtcctatgaaggctcaattgatgccccagtgtggg
gaatcaagggcagggaggtgggagtgtgtgggtaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_141139639_141140762
seq2: B6Ng01-012P17.b_44_1155

seq1  GAATTCCAGAGTCTGGCTGTTTAATCTGACATCTTGAACACAGCCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTCTGGCTGTTTAATCTGACATCTTGAACACAGCCTTTGA  50

seq1  AGAAGCCACCATAAACTTCAGTCTTCTCTCTGTCAGGTAAGCCACCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCACCATAAACTTCAGTCTTCTCTCTGTCAGGTAAGCCACCAATG  100

seq1  AAGATGACGTCTCCTCTTCGAATTGTCCATGTAGGAACAGAAATGAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACGTCTCCTCTTCGAATTGTCCATGTAGGAACAGAAATGAATCC  150

seq1  TAGGTTTTGTGAAGACTGATACAGTTCAATTTCATTTGGTTTGATTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTGTGAAGACTGATACAGTTCAATTTCATTTGGTTTGATTCTCA  200

seq1  AAGATATTAAGTGAACATTTCCATCACTGAGAAAAAAGTTTACCATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAAGTGAACATTTCCATCACTGAGAAAAAAGTTTACCATGAAC  250

seq1  TTGGGAGAGCCTGGAGTCTGCAGTGCTAGGCTGCCGTGCTCTAGCCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAGCCTGGAGTCTGCAGTGCTAGGCTGCCGTGCTCTAGCCAGAC  300

seq1  ACTGACATACTGGTAAGTACTATTTTCCAAAGCCAGAAGTAAGCCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATACTGGTAAGTACTATTTTCCAAAGCCAGAAGTAAGCCCAGGG  350

seq1  GTTGACGTGTTCGGACAAACATTGAAAGACTGAAGTTCTGTCCATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACGTGTTCGGACAAACATTGAAAGACTGAAGTTCTGTCCATAATTA  400

seq1  TCATTAACACTAAAGGCCGCATATCCTGTGGAGTCATCTTGGCCAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACACTAAAGGCCGCATATCCTGTGGAGTCATCTTGGCCAAATCT  450

seq1  TCCCGCTACATACTCTGCAATGTCCAAAGAGGGAAGGAGAAAAAAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCTACATACTCTGCAATGTCCAAAGAGGGAAGGAGAAAAAAAAATG  500

seq1  TCTTTATATTCAAATGTAAGAAGAAATGGGAGATGGAACTTTCACAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATTCAAATGTAAGAAGAAATGGGAGATGGAACTTTCACAGGCA  550

seq1  TATACACAACCAGACACTTTCTCAAGCCCCAGACAGTCTTAATCTCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAACCAGACACTTTCTCAAGCCCCAGACAGTCTTAATCTCTAAG  600

seq1  AGTGAAGTTTCCTCATTTTTCTGAGCTCCTGAGATTATCATGAAAATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTTTCCTCATTTTTCTGAGCTCCTGAGATTATCATGAAAATCAC  650

seq1  TATATTTTGTATTATAATAGGCACCTGTCAGTTACAAAAGAGAAAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGTATTATAATAGGCACCTGTCAGTTACAAAAGAGAAAAAACA  700

seq1  AAACAAAAACAAGGCTTCCGAAATGATCAACTAAGCATCCCTGTCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACAAGGCTTCCGAAATGATCAACTAAGCATCCCTGTCTCCTC  750

seq1  TCTAAAATCCAGACGACACCTCTGAGTTTGATCTTGGTGAAAGAAAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATCCAGACGACACCTCTGAGTTTGATCTTGGTGAAAGAAAGGTG  800

seq1  TGGCCGTAAGCACACCGTGTACCCTTGGGGCACACTGCCCAGTTCATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGTAAGCACACCGTGTACCCTTGGGGCACACTGCCCAGTTCATCTC  850

seq1  TGCTGTGAGTGTGAAGGCCTGCTGAAGCAGACATGTTGTGAAGTTGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAGTGTGAAGGCCTGCTGAAGCAGACATGTTGTGAAGTTGAGCT  900

seq1  GCTTCATAGGAAGACAGATCAATAGCAAGATTATCCAGCTCAGGTTGGGG  950
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GCTTCATAGGAAGACAGATC-ATAGCAAGATTATCCAGCTCA-GTTGGGG  948

seq1  AAGTCACTCCGTGTAGTAGGAATCTCTTGGGGAAAGAGATTTTAGGACGG  1000
       ||||||||||||||||||| ||||||||||||| |||| ||||||||||
seq2  -AGTCACTCCGTGTAGTAGG-ATCTCTTGGGGAAGGAGA-TTTAGGACGG  995

seq1  TGTAGTGTTCAGTTTGTTAACTGACGGAGGTCAAGTGTAGGAAGGGCTGA  1050
      |||||||||||| ||||| ||||||||||||| |||||||  ||||||||
seq2  TGTAGTGTTCAG-TTGTT-ACTGACGGAGGTC-AGTGTAG--AGGGCTGA  1040

seq1  GTGCTTCCTATTGAATCTGCAATGCAGAAATTATTGCTGAGCTCGACAAC  1100
       ||||||||||||||||||| ||||   ||| ||||||||||||||||||
seq2  -TGCTTCCTATTGAATCTGC-ATGCCAGAATAATTGCTGAGCTCGACAAC  1088

seq1  ACTGTCAT-GAAGATATTGCTGCTT  1124
       ||||||| |||||| |||||||||
seq2  CCTGTCATGGAAGAT-TTGCTGCTT  1112

seq1: chr1_141296292_141296629
seq2: B6Ng01-012P17.g_74_411 (reverse)

seq1  CACCTACCCACACACTCCCACCTCCCTGCCCTTGATTCCCCACACTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCCACACACTCCCACCTCCCTGCCCTTGATTCCCCACACTGGGG  50

seq1  CATCAATTGAGCCTTCATAGGACCATGGATCTCTCCTCCCATTGGCGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTGAGCCTTCATAGGACCATGGATCTCTCCTCCCATTGGCGCCT  100

seq1  GACAAGGCCATCCTCTGCTACATATGCATCTAGCTTACTTTGGATCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCCATCCTCTGCTACATATGCATCTAGCTTACTTTGGATCAGTA  150

seq1  CTTTCTCCTTGGAACTAATGGCAATCCATCAGCAGGTTTTCACCATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTTGGAACTAATGGCAATCCATCAGCAGGTTTTCACCATTTCC  200

seq1  AAAAGTTCTTTGTAGGCTGTCAAATACTGGTAGAATGCTTTCATAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCTTTGTAGGCTGTCAAATACTGGTAGAATGCTTTCATAGTGTA  250

seq1  CTCTGTCCAACTTTGCAATACATCTTGCTTTGATTCTAGTCTCCTTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCAACTTTGCAATACATCTTGCTTTGATTCTAGTCTCCTTGGAA  300

seq1  TCTAGCCCCGTGCCTACCTTCCTGGCAATGGACCAATA  338
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCCCGTGCCTACCTTCCTGGCAATGGACCAATA  338