BAC Information

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BAC

Clone NameB6Ng01-013B08
Chromosome1 (Build37)
Map Location 51,336,079 - 51,472,754
singlet/doubletdoublet
Overlap geneSdpr, LOC383504
Upstream geneLOC100041993, Tmeff2
Downstream geneObfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013B08.bB6Ng01-013B08.g
ACCDH847993DH847994
length494701
definitionDH847993|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B08, 5' end.DH847994|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,472,252 - 51,472,754)(51,336,079 - 51,336,781)
sequence
tgactttctagtttggttgattaaacgctgaagcttatctctatcttttt
ccatgtaagtgtagaaggcaagcatgcatagtttaaattaatatagattt
gctttaacttaaaactgtgcaaagcttctttttcaaagacattttaggaa
ttgcagagtcaaggtggcaattagcgaccaatatgagcatgaatttgccc
ctgttctgatgacaatgcccccattctaagggctttacgggaggtgcttt
cccaggaagagtctgtattccacgaattcattatggaagaatgcttctgg
ccaagcataatcaacacagatgtcttaatataaataacaaacttttcttt
tttctttttttcgccatcctatgttttttttttttgtttgtagctaagaa
tcaagatgattttttgacaggaattcaaatttgaaagtcaaaagttattg
gggttgccagatgccccgcacatagtttgttttttttttttttt
gaattcctaagaacctttaatggggagcattcgggtgctttaaacagcac
cttggaagaggataagagcaagtgaggcagaagaaggaaatatctcccag
tgctgtccagagccctccccttctccaagcgtcagctcagcttcaaagat
gctggaatatcttcctacttcctgaatgtattgtggttttttttttaaat
agtcttaaaataccttgggacaatatctaatcaaggactgtattgtaagg
aaagcttttattactaagatagccttttaatttaacattctttgccatag
ttcctgtttgcttcagggatctgccataaggaatgtaagagctacaagtt
atagtgatgattgtggtttcctgaagctgaaagaaacaacttcaacactt
cattgggtattgccttgtattgtcttctgattgcttcttgtgcataaatc
ttgcttatcccagatcaagacccagaatttcttcaggatgatgatcttga
tttatgtttctttcccattgtctaagagtctaagactgagctgatcaacc
agtagctcatttaaagtagattagttatctgtaagttagctggtcaccct
aatatatttttcctaacatctaccaccttgcatgtgtgaatgagcacagc
ggaatgcacagcaggagaaggattaactctgaatatgcgacaagacatca
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51472252_51472754
seq2: B6Ng01-013B08.b_48_547 (reverse)

seq1  AAAAACAAAAAACAAACAAACAAACAATCT-CCAGGCATCTGGCAA-CCC  48
      ||||| ||||||     |||||||| || | |  |||||||||||| |||
seq2  AAAAAAAAAAAA-----AAACAAACTATGTGCGGGGCATCTGGCAACCCC  45

seq1  AATAACTTTTGACATTC-AATTTGAATTCCTGTC-ATTTCTCATCTTGAT  96
      ||||||||||||| ||| |||||||||||||||| |    ||||||||||
seq2  AATAACTTTTGACTTTCAAATTTGAATTCCTGTCAAAAAATCATCTTGAT  95

seq1  TCTTAGCTACAAAC--CGAATTTAAACATAGGATGGCCTGAATGTGTTGA  144
      ||||||||||||||    ||   ||||||||||||||   ||   |   |
seq2  TCTTAGCTACAAACAAAAAAAAAAAACATAGGATGGCGAAAAAAAGAAAA  145

seq1  AAGAACATTTTGTTATTTATATTAAGACATCTGTGTTGATTATGCTTGGC  194
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTTTGTTATTTATATTAAGACATCTGTGTTGATTATGCTTGGC  195

seq1  CAGAAGCATTCTTCCATAATGAATTCGTGGAATACAGACTCTTCCTGGGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCATTCTTCCATAATGAATTCGTGGAATACAGACTCTTCCTGGGA  245

seq1  AAGCACCTCCCGTAAAGCCCTTAGAATGGGGGCATTGTCATCAGAACAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTCCCGTAAAGCCCTTAGAATGGGGGCATTGTCATCAGAACAGG  295

seq1  GGCAAATTCATGCTCATATTGGTCGCTAATTGCCACCTTGACTCTGCAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATTCATGCTCATATTGGTCGCTAATTGCCACCTTGACTCTGCAAT  345

seq1  TCCTAAAATGTCTTTGAAAAAGAAGCTTTGCACAGTTTTAAGTTAAAGCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAATGTCTTTGAAAAAGAAGCTTTGCACAGTTTTAAGTTAAAGCA  395

seq1  AATCTATATTAATTTAAACTATGCATGCTTGCCACGTGGCACTTACATGG  444
      |||||||||||||||||||||||||||||||||   |  |||||||||||
seq2  AATCTATATTAATTTAAACTATGCATGCTTGCCTTCT-ACACTTACATGG  444

seq1  AAAAAGATAGAGATAAGCTTCAGAAAAATAAGATCAACCAAACTAGAAAG  494
      |||||||||||||||||||||||     |   ||||||||||||||||||
seq2  AAAAAGATAGAGATAAGCTTCAG---CGTTTAATCAACCAAACTAGAAAG  491

seq1  TCAGAATTC  503
      |||||||||
seq2  TCAGAATTC  500

seq1: chr1_51336079_51336781
seq2: B6Ng01-013B08.g_66_766

seq1  GAATTCCTAAGCTTCCTTTAATGGGGAGCATTCGGGTGCTTTAAACAGCA  50
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAG-AACCTTTAATGGGGAGCATTCGGGTGCTTTAAACAGCA  49

seq1  CCTTGGAAGAGGATAAGAGCAAGTGAGGCAGAAGAAGGAAATATCTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAGAGGATAAGAGCAAGTGAGGCAGAAGAAGGAAATATCTCCCA  99

seq1  GTGCTGTCCAGAGCCCTCCCCTTCTCCAAGCGTCAGCTCAGCTTCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCCAGAGCCCTCCCCTTCTCCAAGCGTCAGCTCAGCTTCAAAGA  149

seq1  TGCTGGAATATCTTCCTACTTCCTGAATGTATTGTGGTTTTTTTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAATATCTTCCTACTTCCTGAATGTATTGTGGTTTTTTTTTTAAA  199

seq1  TAGTCTTAAAATACCTTGGGACAATATCTAATCAAGGACTGTATTGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAAAATACCTTGGGACAATATCTAATCAAGGACTGTATTGTAAG  249

seq1  GAAAGCTTTTATTACTAAGATAGCCTTTTAATTTAACATTCTTTGCCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTTTATTACTAAGATAGCCTTTTAATTTAACATTCTTTGCCATA  299

seq1  GTTCCTGTTTGCTTCAGGGATCTGCCATAAGGAATGTAAGAGCTACAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTTTGCTTCAGGGATCTGCCATAAGGAATGTAAGAGCTACAAGT  349

seq1  TATAGTGATGATTGTGGTTTCCTGAAGCTGAAAGAAACAACTTCAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGATGATTGTGGTTTCCTGAAGCTGAAAGAAACAACTTCAACACT  399

seq1  TCATTGGGTATTGCCTTGTATTGTCTTCTGATTGCTTCTTGTGCATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGGTATTGCCTTGTATTGTCTTCTGATTGCTTCTTGTGCATAAAT  449

seq1  CTTGCTTATCCCAGATCAAGACCCAGAATTTCTTCAGGATGATGATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTATCCCAGATCAAGACCCAGAATTTCTTCAGGATGATGATCTTG  499

seq1  ATTTATGTTTCTTTCCCATTGTCTAAGAGTCTAAGACTGAGCTGATCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTTCTTTCCCATTGTCTAAGAGTCTAAGACTGAGCTGATCAAC  549

seq1  CAGTAGCTCATTTAAAGTAGATTAGTTTATCTGTAAGTTAGCTGGTCACC  600
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGTAGCTCATTTAAAGTAGATTAG-TTATCTGTAAGTTAGCTGGTCACC  598

seq1  CTAATATA-TTTTCCTAACATCTACCACCTTGCATGTGTGAATGAGCACA  649
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATATTTTTCCTAACATCTACCACCTTGCATGTGTGAATGAGCACA  648

seq1  GCGGAGAGCAACAGCAGGAGAGGTATTAACTCTGAATATGCGACAAGACA  699
      |||||  || ||||||||||| | ||||||||||||||||||||||||||
seq2  GCGGAATGC-ACAGCAGGAGAAGGATTAACTCTGAATATGCGACAAGACA  697

seq1  TCAC  703
      ||||
seq2  TCAC  701