BAC Information

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BAC

Clone NameB6Ng01-013B17
Chromosome1 (Build37)
Map Location 83,421,690 - 83,572,329
singlet/doubletdoublet
Overlap genenone
Upstream geneRhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013B17.bB6Ng01-013B17.g
ACCDH848009DH848010
length1,1041,057
definitionDH848009|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B17, 5' end.DH848010|Mus musculus domesticus DNA, BAC clone: B6Ng01-013B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,421,690 - 83,422,803)(83,571,285 - 83,572,329)
sequence
gaattctttctctcttagcattgagtttaaatattaaatattcatgctta
ctctataactccaaattcattctaaaataattcttttcaaatcttatagg
tattgtttgttttctactcttttaatatttaataaaaaataccaactgtg
tagctatgtatgttcccacagcattgtgaaccttgtgggttagcccaaca
gatattactgatgttttgccattattccttttatgaagcctgccatcctt
gccacaccagagtaactatcatgcaggcaggcatcacatcgacacaagca
tattttctctatacactcgccattcagcagagggtagcttcatggtttat
agaattttcaattggtaaaagtaattgttcagtgtttcaggctgtggtct
actggagcaaaggtacaaaaaggagttatatggcttcataaaacacatag
tttataacagaaatgtgtgaagtatctactgttgctctaacaatctacca
caaacttagtggtcaaaatggctcaaatttacttctttacagttttgaag
gtcagaatctggtatgagcatcctgaacttaatattggtgactagggttt
gatctttctagaggcttcaagagagcatgtatttctactgtatacatccg
tgtctgcctgcatcccttggccaagaccaagtaattctacttgctgcccc
tgtttcacattaattttctctccttttgggttctgagatctctttgttat
ggactctatagttacattttgagtccagcaatgtaatctaggataatctt
tccatctcaattactttcagttaaccatactcagggagtccttttgctat
attatttatacagactgatgtatttaaagatccttggattggagatgaaa
ttagagagaattattcagtctaaaacagagaatattttcttgtaattaaa
atgtaattagctgggcgtggtggcacaccgccttaatcccagcactcggg
agcagaaggcaggcggatttctgagttcgaggcagccttgtctacaaagt
gtgttcaagacagccaggctatacaagaaatcctgtcttaacaccccctt
gccc
gaattcagagcttctttgagtgcgtacaatactgtttatttttattttta
ttagatattttcattatttacatttcaaatgatatcccctttcctggttt
cccttctgaaaaccccctatcctatcccccatccccctgctcaccaacac
acccactcccacttcctggccctgacattcccctacaatggggcatcaag
ccttctcaggaccaagggcctctcctcccattgatatccaacaaggccat
cctctgctacatatgcagctggagacattggtctctccatgtgtattctt
cggttggtggtttagtccctgggagctctggggatactggttggttctta
ttgttgttcttcctatggggctgcaaaccctttcagctccttgggtactt
tctctagctcctccattgtgttgattccaatggttggctgagagcattca
cctctgtatttgtcagaaactggcagagcctctcaggagacagttataac
aggctcctatcagcaagcacttgttggtatccactataatgtctgggttt
ggtgactgtatatgggatagatccccaggtagggcagtctctggatgact
tttcgttcagtctctgttccacactttgtctctgtatctcctccaatgga
tatatcgatcccccttctaagaaggagaaaaagtatctacacttcggtct
tcccttcttcttgagcttcatgtggtctgtgaattgtatcttgggtatta
taagcttctggggcttatattcaagatatcagtggatgtataccatgtgt
gttcttttgtgattgagttgccttactcgggatgatattccatccatcta
cagattcatgcaatcctccatcaaactttcaactcaatttcttcatagat
ttagaaagagtaatttccaaattcatccggaacaaggatccatggggttt
acagaaggctgagaatgatgattcatgaagaactttaatagttaccccaa
tggtccaattatctgaaagaacaccatcttaaagttaaacattttatatt
tgaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83421690_83422803
seq2: B6Ng01-013B17.b_45_1148

seq1  GAATTCTTTCTCTCTTAGCATTGAGTTTAAATATTAAATATTCATGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTCTTAGCATTGAGTTTAAATATTAAATATTCATGCTTA  50

seq1  CTCTATAACTCCAAATTCATTCTAAAATAATTCTTTTCAAATCTTATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAACTCCAAATTCATTCTAAAATAATTCTTTTCAAATCTTATAGG  100

seq1  TATTGTTTGTTTTCTACTCTTTTAATATTTAATAAAAAATACCAACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGTTTTCTACTCTTTTAATATTTAATAAAAAATACCAACTGTG  150

seq1  TAGCTATGTATGTTCCCACAGCATTGTGAACCTTGTGGGTTAGCCCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGTATGTTCCCACAGCATTGTGAACCTTGTGGGTTAGCCCAACA  200

seq1  GATATTACTGATGTTTTGCCATTATTCCTTTTATGAAGCCTGCCATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTACTGATGTTTTGCCATTATTCCTTTTATGAAGCCTGCCATCCTT  250

seq1  GCCACACCAGAGTAACTATCATGCAGGCAGGCATCACATCGACACAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCAGAGTAACTATCATGCAGGCAGGCATCACATCGACACAAGCA  300

seq1  TATTTTCTCTATACACTCGCCATTCAGCAGAGGGTAGCTTCATGGTTTAT  350
      |                 ||||||||||||||||||||||||||||||||
seq2  TNNNNNNNNNNNNNNNNNGCCATTCAGCAGAGGGTAGCTTCATGGTTTAT  350

seq1  AGAATTTTCAATTGGTAAAAGTAATTGTTCAGTGTTTCAGGCTGTGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTCAATTGGTAAAAGTAATTGTTCAGTGTTTCAGGCTGTGGTCT  400

seq1  ACTGGAGCAAAGGTACAAAAAGGAGTTATATGGCTTCATAAAACACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCAAAGGTACAAAAAGGAGTTATATGGCTTCATAAAACACATAG  450

seq1  TTTATAACAGAAATGTGTGAAGTATCTACTGTTGCTCTAACAATCTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACAGAAATGTGTGAAGTATCTACTGTTGCTCTAACAATCTACCA  500

seq1  CAAACTTAGTGGTCAAAATGGCTCAAATTTACTTCTTTACAGTTTTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAGTGGTCAAAATGGCTCAAATTTACTTCTTTACAGTTTTGAAG  550

seq1  GTCAGAATCTGGTATGAGCATCCTGAACTTAATATTGGTGACTAGGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATCTGGTATGAGCATCCTGAACTTAATATTGGTGACTAGGGTTT  600

seq1  GATCTTTCTAGAGGCTTCAAGAGAGCATGTATTTCTACTGTATACATCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCTAGAGGCTTCAAGAGAGCATGTATTTCTACTGTATACATCCG  650

seq1  TGTCTGCCTGCATCCCTTGGCCAAGACCAAGTAATTCTACTTGCTGCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTGCATCCCTTGGCCAAGACCAAGTAATTCTACTTGCTGCCCC  700

seq1  TGTTTCACATTAATTTTCTCTCCTTTTGGGTTCTGAGATCTCTTTGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACATTAATTTTCTCTCCTTTTGGGTTCTGAGATCTCTTTGTTAT  750

seq1  GGACTCTATAGTTACATTTTGAGTCCAGCAATGTAATCTAGGATAATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTATAGTTACATTTTGAGTCCAGCAATGTAATCTAGGATAATCTT  800

seq1  TCCATCTCAATTACTTTCAGTTAACCATACTCAGGGAGTCCTTTTGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCAATTACTTTCAGTTAACCATACTCAGGGAGTCCTTTTGCTAT  850

seq1  ATTATTTATACAGACTGATGTATTTAAAGATCCTTGGGATTGGAGATGAA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTATTTATACAGACTGATGTATTTAAAGATCCTT-GGATTGGAGATGAA  899

seq1  ATTAGAAGAGAATTATTCAGTCTAAAACAGGAGAATATTTTCTTGTAATT  950
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTAG-AGAGAATTATTCAGTCTAAAACA-GAGAATATTTTCTTGTAATT  947

seq1  AAAAATGTAATTAGCTGGGCGTGGTGGCACACGCCTTTAATCCCAGCACT  1000
       |||||||||||||||||||||||||||||||  | ||||||||||||||
seq2  -AAAATGTAATTAGCTGGGCGTGGTGGCACACCGCCTTAATCCCAGCACT  996

seq1  CGGGAGGCAG-AGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTA  1049
      ||||| |||| |||||||||||||||||||||||||| |||||| |||||
seq2  CGGGA-GCAGAAGGCAGGCGGATTTCTGAGTTCGAGG-CAGCCTTGTCTA  1044

seq1  CAAAGTGTGTTTCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTTAA  1099
      ||||||||| |||| |||||||| ||||||||| ||||||||||||||||
seq2  CAAAGTGTG-TTCAAGACAGCCA-GGCTATACA-AGAAATCCTGTCTTAA  1091

seq1  CCACCCCCTCTGCCC  1114
       |||||||| |||||
seq2  -CACCCCCT-TGCCC  1104

seq1: chr1_83571285_83572329
seq2: B6Ng01-013B17.g_69_1125 (reverse)

seq1  ATTTTCAATATA-AAAATGTTT-ACTTTAAGATGGTG-TCCTTCAGAT-A  46
      |||||||| ||| ||||||||| |||||||||||||| || ||||||| |
seq2  ATTTTCAA-ATATAAAATGTTTAACTTTAAGATGGTGTTCTTTCAGATAA  49

seq1  TTGGA-CATTGGGGTAACTATTAAAGTTC-TCATGAATCATTCATTTCTC  94
      ||||| ||||||||||||||||||||||| |||||||||| ||| |||||
seq2  TTGGACCATTGGGGTAACTATTAAAGTTCTTCATGAATCA-TCA-TTCTC  97

seq1  AGCC-TCTGT-AACCCCAT-GAT-CTTGTTCCCGATGAATTTGGAAATTA  140
      |||| ||||| |||||||| ||| |||||||| |||||||||||||||||
seq2  AGCCTTCTGTAAACCCCATGGATCCTTGTTCCGGATGAATTTGGAAATTA  147

seq1  CTCTTTCTAAATCTATGAAG-AATTGAGTTGAAAGTTTGATGGA-GATTG  188
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  CTCTTTCTAAATCTATGAAGAAATTGAGTTGAAAGTTTGATGGAGGATTG  197

seq1  CATTGAATCTGTAGATGGATGGAATATCATCCCGAGTAAGGCAACTCAAT  238
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TGAATCTGTAGATGGATGGAATATCATCCCGAGTAAGGCAACTCAAT  246

seq1  CACAAAAGAACACACATGGTATACATCCACTGATATC-TGAATATAAG-C  286
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  CACAAAAGAACACACATGGTATACATCCACTGATATCTTGAATATAAGCC  296

seq1  CCAGAAGCTTATAATACCCAAGATACAATTCACAGACCACATGAAGCTCA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCTTATAATACCCAAGATACAATTCACAGACCACATGAAGCTCA  346

seq1  AGAAGAA-GGAAGACCGAAGTGTAGATAC-TTTTCTCCTTCTTAGAAGGG  384
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAGAAGGGAAGACCGAAGTGTAGATACTTTTTCTCCTTCTTAGAAGGG  396

seq1  GGATCGATATATCCATTGGAGGAGATACAGAGACAAAGTGTGGAACAGAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGATATATCCATTGGAGGAGATACAGAGACAAAGTGTGGAACAGAG  446

seq1  ACTGAACGAAAAGTCATCCAGAGACTGCCCTACCTGGGGATCTATCCCAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACGAAAAGTCATCCAGAGACTGCCCTACCTGGGGATCTATCCCAT  496

seq1  ATACAGTCACCAAACCCAGACATTATAGTGGATACCAACAAGTGCTTGCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCACCAAACCCAGACATTATAGTGGATACCAACAAGTGCTTGCT  546

seq1  GATAGGAGCCTGTTATAACTGTCTCCTGAGAGGCTCTGCCAGTTTCTGAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGCCTGTTATAACTGTCTCCTGAGAGGCTCTGCCAGTTTCTGAC  596

seq1  AAATACAGAGGTGAATGCTCTCAGCCAACCATTGGAATCAACACAATGGA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGAGGTGAATGCTCTCAGCCAACCATTGGAATCAACACAATGGA  646

seq1  GGAGCTAGAGAAAGTACCCAAGGAGCTGAAAGGGTTTGCAGCCCCATAGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGAGAAAGTACCCAAGGAGCTGAAAGGGTTTGCAGCCCCATAGG  696

seq1  AAGAACAACAATAAGAACCAACCAGTATCCCCAGAGCTCCCAGGGACTAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAACAATAAGAACCAACCAGTATCCCCAGAGCTCCCAGGGACTAA  746

seq1  ACCACCAACCGAAGAATACACATGGAGAGACCAATGTCTCCAGCTGCATA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACCGAAGAATACACATGGAGAGACCAATGTCTCCAGCTGCATA  796

seq1  TGTAGCAGAGGATGGCCTTGTTGGATATCAATGGGAGGAGAGGCCCTTGG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGAGGATGGCCTTGTTGGATATCAATGGGAGGAGAGGCCCTTGG  846

seq1  TCCTGAGAAGGCTTGATGCCCCATTGTAGGGGAATGTCAGGGCCAGGAAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAAGGCTTGATGCCCCATTGTAGGGGAATGTCAGGGCCAGGAAG  896

seq1  TGGGAGTGGGTGTGTTGGTGAGCAGGGGGATGGGGGATAGGATAGGGGGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGGGTGTGTTGGTGAGCAGGGGGATGGGGGATAGGATAGGGGGT  946

seq1  TTTCAGAAGGGAAACCAGGAAAGGGGATATCATTTGAAATGTAAATAATG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGGGAAACCAGGAAAGGGGATATCATTTGAAATGTAAATAATG  996

seq1  AAAATATCTAATAAAAATAAAAATAAACAGTATTGTACGCACTCAAAGAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTAATAAAAATAAAAATAAACAGTATTGTACGCACTCAAAGAA  1046

seq1  GCTCTGAATTC  1045
      |||||||||||
seq2  GCTCTGAATTC  1057