BAC Information

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BAC

Clone NameB6Ng01-013C07
Chromosome1 (Build37)
Map Location 148,142,833 - 148,144,013
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013C07.bB6Ng01-013C07.g
ACCDH848036DH848037
length1,1981,149
definitionDH848036|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C07, 5' end.DH848037|Mus musculus domesticus DNA, BAC clone: B6Ng01-013C07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataaatttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccatttg
tctacttgtctgtttctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggctcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
cggagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgccaagatatttttttatta
ttttgtgactatgagaagggtgttgtttccctaattctttttcagcctgt
ttattcttttgtatgagaaaggccattgacttgttgaggttaattttaat
atccagcctacttcactgagctgttatccagtttgcgagatctcggtgaa
ttttaagtaccattatattacatctatacactcgcaaaaggaattgactc
ctctttccaatttatcttgatctgtgtgcaatgctcgcgaacttcaga
gaattctcagctactggttgatgtcttgcttcttactgggcatctctcta
gaaaagtaaataaaagctacagtatagctgtagtgagcccatgttctaga
tatcagtgttttactactatcctctttattgtctaaccctgaagattcaa
aaaactgtgcaggatcattaacttaaaaatttgtgtgtatatatatatgc
acaataaaatagcatgtaattcttaaaatttattatgaagccatttactc
taaattgagctaaattaaatatgcttgcactaaagaatcttttgtcaatt
aactattttatagtaattattgataaatatttacagaggtacttaatgtt
ggaagtattaagcctgtttattctgtagtaattttcaacatactaacact
tttaatttatgaatgaaaatattaaccagagcagacatctttcattaaga
caataaataaaatgatgtgcaagcattttgtaattaaatcaagaccctaa
aggatccttaagtatatgactcttgtgttctaagttgtagctttgttatt
tttgccacatgcaatttacttagcaagaagtatttgttaatctaaagata
attttatacaactggatcttttccctttagagtgattattttagaatctc
aaaaaaatgtgtatttgcatttctgagtaaataaatatccaatccttagt
ttgttttcctcattggcattgtgaattccaagatatgttaatgagatatt
ttagaagtgatgaatgtaaccatgtaagagcacgaaataaattacattta
ttccttctaaaaaactcattaaaatcttatttttttcctgtttatcaagt
aagctctaaaaaaaagcaaatataaagaaatagaaatgcaagtcacagat
agatttatctattttatttattagttaaaactggtgaaaatgcacaacta
aaattcatcaaactgtcttttttttgtttttcctcaagtttcagttgtta
gtgatagtgggagtgcatagtctcctcccagtataattgttgggaaatga
tgccttaattaaaatttaaactatcatgaggtaattcgtaattcttgacc
tgaactctgtcgtgaattcaatactctcactgttccctaaaaacttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148142833_148144013
seq2: B6Ng01-013C07.g_67_1215 (reverse)

seq1  CTCAAGTTTTTAGAGAACAAGATGAAATTATTAAAATCTACAGCAGAGTT  50
      ||||||||||||| |||||   ||| | |||| || || ||  |||||||
seq2  CTCAAGTTTTTAGGGAACA--GTGAGAGTATTGAATTC-ACGACAGAGTT  47

seq1  CAAGTCAATGAATTAAAGGAGATTATACACTCATTGATAGTTAAATATTT  100
      || ||||| |||||  | || ||||    |||| |||||||| || ||||
seq2  CAGGTCAA-GAATT--ACGA-ATTA---CCTCA-TGATAGTTTAA-ATTT  88

seq1  TAATTTAAGGCATCATTTTCACAAACAATTAATTAACTGGGAAGGAGACT  150
      ||| ||||||||||||||   | ||||||||    |||||| ||||||||
seq2  TAA-TTAAGGCATCATTT--CCCAACAATTA---TACTGGG-AGGAGACT  131

seq1  ATGCACTCACACTTATCACTAAAACCAAACTGAAACTTGAAGGAAAAACA  200
      |||||||| ||| |||||||||     |||||||||||| ||||||||||
seq2  ATGCACTCCCAC-TATCACTAA----CAACTGAAACTTG-AGGAAAAACA  175

seq1  AAAAAAAGAACAAGTTTGATGAAAATTTTAGGTTGTGCATTTTCACCAGT  250
      |||||||||   |||||||||  ||||||| |||||||||||||||||||
seq2  AAAAAAAGA--CAGTTTGATG--AATTTTA-GTTGTGCATTTTCACCAGT  220

seq1  TTTAACTAATAAATAAAATAGATAAATCTATCTGTGACTTGCATTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTAATAAATAAAATAGATAAATCTATCTGTGACTTGCATTTCTAT  270

seq1  TTCTTTATATTTGCTTTTTTTTAGAGCTTACTTGATAAACAGGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATATTTGCTTTTTTTTAGAGCTTACTTGATAAACAGGAAAAAAA  320

seq1  TAAGATTTTAATGAGTTATTTTAGAAGGAATAAATGTAATTTTATTTCGT  400
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  TAAGATTTTAATGAGTT-TTTTAGAAGGAATAAATGTAA-TTTATTTCGT  368

seq1  GCTCTTACATGGTTACATTCATCACTTCTAAAATATCTCATTAACATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACATGGTTACATTCATCACTTCTAAAATATCTCATTAACATATC  418

seq1  TTGGAATTCACAATGCCAATGAGGAAAACAAACTAAGGATTGGATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTCACAATGCCAATGAGGAAAACAAACTAAGGATTGGATATTTA  468

seq1  TTTACTCAGAAATGCAAATACACATTTTTTTGAGATTCTAAAATAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCAGAAATGCAAATACACATTTTTTTGAGATTCTAAAATAATCAC  518

seq1  TCTAAAGGGAAAAGATCCAGTTGTATAAAATTATCTTTAGATTAACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGGGAAAAGATCCAGTTGTATAAAATTATCTTTAGATTAACAAAT  568

seq1  ACTTCTTGCTAAGTAAATTGCATGTGGCAAAAATAACAAAGCTACAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGCTAAGTAAATTGCATGTGGCAAAAATAACAAAGCTACAACTT  618

seq1  AGAACACAAGAGTCATATACTTAAGGATCCTTTAGGGTCTTGATTTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAAGAGTCATATACTTAAGGATCCTTTAGGGTCTTGATTTAATT  668

seq1  ACAAAATGCTTGCACATCATTTTATTTATTGTCTTAATGAAAGATGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGCTTGCACATCATTTTATTTATTGTCTTAATGAAAGATGTCTG  718

seq1  CTCTGGTTAATATTTTCATTCATAAATTAAAAGTGTTAGTATGTTGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTAATATTTTCATTCATAAATTAAAAGTGTTAGTATGTTGAAAA  768

seq1  TTACTACAGAATAAACAGGCTTAATACTTCCAACATTAAGTACCTCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACAGAATAAACAGGCTTAATACTTCCAACATTAAGTACCTCTGTA  818

seq1  AATATTTATCAATAATTACTATAAAATAGTTAATTGACAAAAGATTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATCAATAATTACTATAAAATAGTTAATTGACAAAAGATTCTTT  868

seq1  AGTGCAAGCATATTTAATTTAGCTCAATTTAGAGTAAATGGCTTCATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAGCATATTTAATTTAGCTCAATTTAGAGTAAATGGCTTCATAAT  918

seq1  AAATTTTAAGAATTACATGCTATTTTATTGTGCATATATATATACACACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAGAATTACATGCTATTTTATTGTGCATATATATATACACACA  968

seq1  AATTTTTAAGTTAATGATCCTGCACAGTTTTTTGAATCTTCAGGGTTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAGTTAATGATCCTGCACAGTTTTTTGAATCTTCAGGGTTAGA  1018

seq1  CAATAAAGAGGATAGTAGTAAAACACTGATATCTAGAACATGGGCTCACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGAGGATAGTAGTAAAACACTGATATCTAGAACATGGGCTCACT  1068

seq1  ACAGCTATACTGTAGCTTTTATTTACTTTTCTAGAGAGATGCCCAGTAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATACTGTAGCTTTTATTTACTTTTCTAGAGAGATGCCCAGTAAG  1118

seq1  AAGCAAGACATCAACCAGTAGCTGAGAATTC  1181
      |||||||||||||||||||||||||||||||
seq2  AAGCAAGACATCAACCAGTAGCTGAGAATTC  1149