BAC Information

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BAC

Clone NameB6Ng01-013F24
Chromosome1 (Build37)
Map Location 173,567,697 - 173,568,784
singlet/doubletsinglet
Overlap geneSlamf7
Upstream geneOlfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9
Downstream geneCd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013F24.bB6Ng01-013F24.g
ACCDH848203DH848204
length1,1551,086
definitionDH848203|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F24, 5' end.DH848204|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctggga
ttccacctcacaccagtcagaatggctaagatcaaaaattcagttgacaa
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccggaggatccagcaatacctcccctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagccccaaac
ctaggattcccaagatataagatacaatttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcccctccttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatgcagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacacattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgctggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatgatcacaggtctcccaa
tggagagctagagaaagacccacgagctaaaggatctgcacccttatagg
tgaacaaattatgactatcagtacccccgagctctgactctagctgcatt
gtatcaaagatgccctagtcgccatcactgcaagaagtcattgaaccgca
acttattgcctcatacaggaacgcaggccaaaacgggatggtgggtatat
gcaaa
gaattcttttgtcttcatatatttttctcccttttatccttcaagcaata
tatctacatatgagatttagtgttaatttagtattaaatataaagataag
agggagtggtctcttcccttaagaagtgcagagtcaatggctggaaagat
agctcattcaataaagtgcttgccatacatgtgtaaggacctgagttcaa
atcccagaactcaccttaaagaaaaaaaattccgatgtggcagaatgcac
taataatcccagcactggggaggtagacataggtgcatccctggagctaa
ctggccaactgtcctagcctaactagttaggtcaagtgagcaagagaacc
tgtcttataaaacaaggtggaccatgcttgaggagcaacacccaaggttg
acctctggccttccaacagtgcacatgcactcatacccgcgcgtgcacac
acacacatgcacacatgaatatgaacacacacatacatgtacacatacac
aaaaagaagagcacagtcagctgtatgccttagctccaaactagagagga
cattccttgccttctctcctgaaggagagaaggtgtcccctcctgtcctt
ttctcagaggacatagagatgtggcctttctgatgacacagatcctacct
acatggctgattctcattctgtttctgcctggcagacaatggtctcccag
ccctttctgtccccatccctgccagtgctccaaccagcctgtcttctcta
ctcaatcagcaccaagaccccctatctcttcacctcaggctagacatatt
cctcttggatacaccttcttctactctctacagtgtgcccccacactggt
gttcccacgccctcggttatttcttccctcgccactgggtactctccacg
gggagaggtggggggttgactagaagagaaacagcgccagcaacagtgag
tacaatgcaagaacttggagatagtcatctcctctgtcaagaaaatctag
aacatctgaacttctctgtttccactttgctacctggaatctcgaggtaa
ggagtgacatggacacactgactaccttggcctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173567697_173568784
seq2: B6Ng01-013F24.g_66_1151 (reverse)

seq1  AACAGGCCAAGTTAGTCATTGTGT-CATGTCACTTCTTGACCTCGAGA-T  48
      ||||||||||| |||||| ||||| ||||||||| ||| ||||||||| |
seq2  AACAGGCCAAGGTAGTCAGTGTGTCCATGTCACTCCTT-ACCTCGAGATT  49

seq1  CCAGGTAGCCAAAGTGGGAAGCAGAGGAGGTCAGGAATGCTCTAGAATGT  98
      |||||||| |||||| |||| ||||| || ||||  ||| |||||| | |
seq2  CCAGGTAG-CAAAGT-GGAAACAGAGAAGTTCAG--ATGTTCTAGATTTT  95

seq1  CTCTGACAGAGGAAGATGACCTATCTCCAAGT--CTGCATTTGTACTTCA  146
      || ||||||||| |||||| ||||||||||||   |||| |||||| |||
seq2  CT-TGACAGAGG-AGATGA-CTATCTCCAAGTTCTTGCA-TTGTAC-TCA  140

seq1  CTGTTGCT-GCGCTGTTTCTC-TCTAGTCCACCCTCCA-CTCT-CCCGTG  192
      |||||||| |||||||||||| ||||||| |||| ||| |||| ||||||
seq2  CTGTTGCTGGCGCTGTTTCTCTTCTAGTCAACCCCCCACCTCTCCCCGTG  190

seq1  GAGAGTA-CCAGTGCGGAGGGAAGAAATAAACGAGGGCGTTGGGACA-CA  240
      ||||||| ||||||  |||||||||||||| ||||||||| || ||| ||
seq2  GAGAGTACCCAGTGGCGAGGGAAGAAATAACCGAGGGCGTGGGAACACCA  240

seq1  GTGTGGGGGCACACTGTAGAGAGTTAGAAGAAGGTGTATCCAAGAGGAAT  290
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTGGGGGCACACTGTAGAGAG-TAGAAGAAGGTGTATCCAAGAGGAAT  289

seq1  ATGTCTAGCCTGAGGTGAAGAGATAGGGGGTCTTGGTGCTGATTGAGTAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAGCCTGAGGTGAAGAGATAGGGGGTCTTGGTGCTGATTGAGTAG  339

seq1  AGAAGACAGGCTGGTTGGAGCACTGGCAGGGATGGGGACAGAAAGGGCTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGGCTGGTTGGAGCACTGGCAGGGATGGGGACAGAAAGGGCTG  389

seq1  GGAGACCATTGTCTGCCAGGCAGGAACAGAATGAGAATCAGCCATGTAGG  440
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGAGACCATTGTCTGCCAGGCAGAAACAGAATGAGAATCAGCCATGTAGG  439

seq1  TAGGATCTGTGTCATCAGAAAGGCCACATCTCTATGTCCTTCTGAGAAAA  490
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGGATCTGTGTCATCAGAAAGGCCACATCTCTATGTCC-TCTGAGAAAA  488

seq1  GGACAGGAGGGGACACCTTCTCTCCTTCAGGAGAGAAGGCAAGGAATGTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGGGGACACCTTCTCTCCTTCAGGAGAGAAGGCAAGGAATGTC  538

seq1  CTCTCTAGTTTGGAGCTAAGGCATACAGCTGACTGTGCTCTTCTTTTTGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGTTTGGAGCTAAGGCATACAGCTGACTGTGCTCTTCTTTTTGT  588

seq1  GTATGTGTACATGTATGTGTGTGTTCATATTCATGTGTGCATGTGTGTGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTACATGTATGTGTGTGTTCATATTCATGTGTGCATGTGTGTGT  638

seq1  GTGCACGCGCGGGTATGAGTGCATGTGCACTGTTGGAAGGCCAGAGGTCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGCGCGGGTATGAGTGCATGTGCACTGTTGGAAGGCCAGAGGTCA  688

seq1  ACCTTGGGTGTTGCTCCTCAAGCATGGTCCACCTTGTTTTATAAGACAGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGTGTTGCTCCTCAAGCATGGTCCACCTTGTTTTATAAGACAGG  738

seq1  TTCTCTTGCTCACTTGACCTAACTAGTTAGGCTAGGACAGTTGGCCAGTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGCTCACTTGACCTAACTAGTTAGGCTAGGACAGTTGGCCAGTT  788

seq1  AGCTCCAGGGATGCACCTATGTCTACCTCCCCAGTGCTGGGATTATTAGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGGATGCACCTATGTCTACCTCCCCAGTGCTGGGATTATTAGT  838

seq1  GCATTCTGCCACATCGGAATTTTTTTTCTTTAAGGTGAGTTCTGGGATTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGCCACATCGGAATTTTTTTTCTTTAAGGTGAGTTCTGGGATTT  888

seq1  GAACTCAGGTCCTTACACATGTATGGCAAGCACTTTATTGAATGAGCTAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGTCCTTACACATGTATGGCAAGCACTTTATTGAATGAGCTAT  938

seq1  CTTTCCAGCCATTGACTCTGCACTTCTTAAGGGAAGAGACCACTCCCTCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGCCATTGACTCTGCACTTCTTAAGGGAAGAGACCACTCCCTCT  988

seq1  TATCTTTATATTTAATACTAAATTAACACTAAATCTCATATGTAGATATA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATATTTAATACTAAATTAACACTAAATCTCATATGTAGATATA  1038

seq1  TTGCTTGAAGGATAAAAGGGAGAAAAATATATGAAGACAAAAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGAAGGATAAAAGGGAGAAAAATATATGAAGACAAAAGAATTC  1086