BAC Information

Click to search

BAC

Clone NameB6Ng01-013H05
Chromosome1 (Build37)
Map Location 152,077,179 - 152,077,677
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712
Downstream geneLOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013H05.bB6Ng01-013H05.g
ACCDH848261DH848262
length1,128937
definitionDH848261|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H05, 5' end.DH848262|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttttaatggggttatttgat
tttctggagcctaccttcttgagttctttatatatattggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgatggtgtcttttgccttgcataagctttgcagtttc
atgaggtcccatttggcaattctcgatcttacagcacaagccattgctgt
tctattcaggaattcttcccctgtgcccatatcttcaaggcgtttcccca
ctttttcctctataaattttagtgtctttggttttatgtgaagttccttg
atccacttagatttgaccttagtacaaggagataagaatggatctattca
cattatttctacatgataacaaccagttgtgtcagcaccatttgttgaaa
atgctgtctttcttccactggatggttttagatcccttgtcaaagatcaa
gtgaccatagatgtgtgggttcatttgtgggtcttcaattccattccatt
ggtctacttgtctgtcactgtaccagtaccatgcagtttttttatcacaa
ttgctctgtagtacagctttaggtcaggcatggtgagtccacccgaggtt
cttttatccttgagaagacttttttgctatcctaggttttttgttattcc
agatgaatttgcagattgctctttctaattccttgaagaattgagttgga
attttgagggggattgcattgaatctgtagattgcttttgacaagatagc
catttttacaatgttgatcctgccaatccatgagcatgggagatctttcc
atcttctgagatcttctttaattttctttcttcagagacttgaagttttt
atcatacagatcttttacttcctttagttagcgtcacgacaatatatttt
atgttattgtgactattgagaaggtggtgtttccctaattccttctcagc
atgttttattattgtgtagagaaggacatgacttgtttgagtttatttat
atccagtaattcactgagctacttatcagttaggagtctctctggggaat
ttttaggggccactatattactcattac
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccattccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacacttcattaccatgacccgcagt
tctggttccggaatgagggatcttccttgcgccggtgatggtaaccgtcc
caggttttctcgtcccaggttttcttgtcccaggtcttcttgtcccaggt
cttctcgtcccgggtcttctcgtcccgggtcttctcgtcccaggttttct
cgtcccaggttttcttgtcccaggtcttcttgtcccaggtcttctcgtcc
caggtcttctcgtcccgggtcttctcgtcccgggttttctcgtaccgggt
ttcggcaccaactcttacacgcgttctcgcgaccggccaggaagaacgca
acaaagcggaatcttctgcggcaaagctttattgcttacatcttcaggag
ccagagagcaagagagcaagagagcaagagagcaagagagcaagagtgca
agagtgcaagagtgcaagagtgcaagagagcaagagagcaagagcaagag
agagaaagcaagagcaagaaaaagaacaagaacaagaaagcaagagcaag
aacaagaacaagaaagcaagagagagaaagcaagagagagaatggcaaaa
ccccgtcccttttaaggagaattatcctccgcctaggatgtattactccc
tgattggctgcagcccatcggcccagttgtcatcacgagaaaggcagaac
acgtggcgggaaaactgcccctgcacgtgtgcagattatgtttactactt
agaacacagctgtcagcgccatctataatggcaaatgtgagggcagcttc
ccacaaagaaccaactggggaaaggaccttaacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152077179_152077677
seq2: B6Ng01-013H05.g_68_628 (reverse)

seq1  TCTTGCTTTCTTG--CTCTTGCTCTCTTGCTCTCTTGCTCTCTTGCTCCC  48
      ||||||  |||||  ||||||||||||||||||||||||||||||||| |
seq2  TCTTGCACTCTTGCACTCTTGCTCTCTTGCTCTCTTGCTCTCTTGCTCTC  50

seq1  TGGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAGAAG  98
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGC-TTTGCCGCAGAAG  99

seq1  ATTCCAGTTTGTTGCGTCTTTCCTGGCCGGTCGCGCGAACTCG-GCAAGA  147
      |||||  ||||||||||  |||||||||||||||| |||| || | ||||
seq2  ATTCCGCTTTGTTGCGTTCTTCCTGGCCGGTCGCGAGAACGCGTGTAAGA  149

seq1  GTTGGTGCTGAAACCCGGGACGAGAAGACCTGGGACGAGAAGACCCGGGA  197
      |||||||| ||||||||| ||||||| ||| |||||||||||||||||||
seq2  GTTGGTGCCGAAACCCGGTACGAGAAAACCCGGGACGAGAAGACCCGGGA  199

seq1  CGAGAAGACCTGGGACGAGAAGACCTGGGACGAGAAATCCCAGGACGAGA  247
      ||||||||||||||||||||||||||||||| ||||  ||  |||| |||
seq2  CGAGAAGACCTGGGACGAGAAGACCTGGGACAAGAAGACCTGGGACAAGA  249

seq1  AAACCTGGGACGAGAAAACC------------------------------  267
      ||||||||||||||||||||                              
seq2  AAACCTGGGACGAGAAAACCTGGGACGAGAAGACCCGGGACGAGAAGACC  299

seq1  -----CGAGATG-------------------------AGAAAACCTGGGA  287
           ||||| |                         |||||||||||||
seq2  CGGGACGAGAAGACCTGGGACAAGAAGACCTGGGACAAGAAAACCTGGGA  349

seq1  CGAGAAGACCTGGGACGGTTACCATCACCGGCGCAAGGAAGATCCCTAAT  337
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  CGAGAAAACCTGGGACGGTTACCATCACCGGCGCAAGGAAGATCCCTCAT  399

seq1  TCCGGAACCAGAACTGCGGGTCATGGTAATGAAGTGTTCCCGTAAAACAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAACCAGAACTGCGGGTCATGGTAATGAAGTGTTCCCGTAAAACAG  449

seq1  ACTGTTGAGAAGGATTCAACTGTGTGAATTCAGAACTCTTCAGCTGGGGA  437
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGA  499

seq1  ATGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAA  549

seq1  CTGCGTGAATTC  499
      ||||||||||||
seq2  CTGCGTGAATTC  561