BAC Information

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BAC

Clone NameB6Ng01-013J17
Chromosome1 (Build37)
Map Location 89,430,878 - 89,610,796
singlet/doubletdoublet
Overlap geneLOC620454, Neu2, Inpp5d
Upstream genePde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J17.bB6Ng01-013J17.g
ACCDH848380DH848381
length5621,058
definitionDH848380|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J17, 5' end.DH848381|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,430,878 - 89,431,431)(89,609,741 - 89,610,796)
sequence
gaattcatggcagtggttgtgtttgagatggatcagtagatgttagtcac
ggaacttgactccacctagtcaagttacataagcagtaaaccatggctgg
gagctggcaggaacgaggaggagaggagcctttggtggtgtagctgcctg
aatcttgcatggggcactccggcaatgtagttttgtgagttgtttgccca
tgctgggataggattttctgtgatgttcctacctgatgctcttgtgttct
tgcaaataactcctgacccatgctcctgtaagtaaccccaggagacccat
tggatcaccgcactggacctggcagaatcattgctttgatctacctttga
cctctgtttctacggttaatagaaatacactcgctgggaaaagtcacaca
acaccgattctaataatgatgtgttacagttagctcagcaaatgaagcac
cattccagtgtctctctgtaaggagcagtgttctgccctgactgtgcttc
ctttctgatcaccctcgcccagcatcacctggtaacctcagtacattgga
aatccgtgctcc
gaattcactgtgtagacaacgctggccgtgaactcacaagatcagcccgt
ctacgtcctgagttctggaagtaaaggcatgccccgctacacccctctgt
gttggttggtttgaaatgccctcttgacacaatctaggatcaccagggaa
gagagtctttatgaagaattgactagataagtttggcttgtgggcatgtc
tatagggacttgtcttcattgttaattaatgtaggaagactcagtccatt
gtgggtggcaccatttccttggctgggccttgaactgtgtaagagtgaag
aaaactaactgagaacaagcaagggtgcatgtgtttattctctgtgctct
tgactgttgatgtgatacttcaggttcctgccctggcttctccacaacac
tagactgtaatgtgggcttgaggaagtcaaatgatcccttccctccccat
gctaccttttaatcagggcatttgccacagcaacagaaatgaagctagga
agtcatgggtggtgacttttgaccacttatgttcctggcctccctgaatg
caggagaagtatcttttgccctggaattgttcagtcatctatagctcctt
cttcctgcactgcacatccttccactggctggtgttaagtctgtaggtca
tggactatactgtatttacactgtgtcttcctgaatatagcaggtgttca
ttaaaggatagttgagctgagcccttcctacatggaaatgttctccaagg
ctttgatctttcagagatgaggatttgaactcaggatgtgaaacttgagg
taggagagtgggtcccctgggccacaacatttcttctccctctgaccttg
ggcttgcctgaactccactttacctctccttggactctggttcacacagc
ccagctagcttgtattaagtcttagcaagcctcgtctacttgccagaagg
ctccattgcctcatagggtcatggctggggaggttcttcaagatttcatt
ccactggattcatccccttcggctccaaggtctggaaagatactttaagg
aaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89430878_89431431
seq2: B6Ng01-013J17.b_46_607

seq1  GAATTCATGGCAGTGGTTGTGTTTGAGATGGATCAGTAGATGTTAGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAGTGGTTGTGTTTGAGATGGATCAGTAGATGTTAGTCAC  50

seq1  GGAACTTGACTCCACCTAGTCAAGTTACATAAGCAGTAAACCATGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGACTCCACCTAGTCAAGTTACATAAGCAGTAAACCATGGCTGG  100

seq1  GAGCTGGCAGGAACGAGGAGGAGAGGAGCCTTTGGTGGTGTAGCTGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCAGGAACGAGGAGGAGAGGAGCCTTTGGTGGTGTAGCTGCCTG  150

seq1  AATCTTGCATGGGGCACTCCGGCAATGTAGTTTTGTGAGTTGTTTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCATGGGGCACTCCGGCAATGTAGTTTTGTGAGTTGTTTGCCCA  200

seq1  TGCTGGGATAGGATTTTCTGTGATGTTCCTACCTGATGCTCTTGTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATAGGATTTTCTGTGATGTTCCTACCTGATGCTCTTGTGTTCT  250

seq1  TGCAAATAACTCCTGACCCATGCTCCTGTAAGTAACCCCAGGAGACCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATAACTCCTGACCCATGCTCCTGTAAGTAACCCCAGGAGACCCAT  300

seq1  TGGATCACCGCACTGGACCTGGCAGAATCATTGCTTTGATCTACCTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACCGCACTGGACCTGGCAGAATCATTGCTTTGATCTACCTTTGA  350

seq1  CCTCTGTTTCTACGGTTAATAGAAATACACTCGCTGGGAAAAGTCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTCTACGGTTAATAGAAATACACTCGCTGGGAAAAGTCACACA  400

seq1  ACACCGATTCTAATAATGATGTGTTACAGTTAGCTCAGCAAATGAAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGATTCTAATAATGATGTGTTACAGTTAGCTCAGCAAATGAAGCAC  450

seq1  CATTCCAGTGTCTCTCTGTAAGGAGCAGTGTTCTGCCCTGACTGTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGTGTCTCTCTGTAAGGAGCAGTGTTCTGCCCTGACTGTGCTTC  500

seq1  C-TTCTGATCA-CCTCGCCCAGCATCAC--TGTAA-CTCAGTACA-TGGA  544
      | ||||||||| ||||||||||||||||   |||| ||||||||| ||||
seq2  CTTTCTGATCACCCTCGCCCAGCATCACCTGGTAACCTCAGTACATTGGA  550

seq1  A--TCGTGCTCC  554
      |   ||||||||
seq2  AATCCGTGCTCC  562

seq1: chr1_89609741_89610796
seq2: B6Ng01-013J17.g_70_1124 (reverse)

seq1  TTTTCTTTCCTAAATGT-TCTCTTCCAGACTTTGTGAAGACAGAGCGGGA  49
      ||||||||||| || || ||| |||||||| ||| ||   | ||  ||||
seq2  TTTTCTTTCCTTAAAGTATCT-TTCCAGACCTTG-GA--GCCGAAGGGGA  46

seq1  TGAATCCAGTGGAATGAAATGCTTGAAGAACCTCACCAGCCATGACCCTA  99
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  TGAATCCAGTGGAATGAAAT-CTTGAAGAACCTCCCCAGCCATGACCCTA  95

seq1  TGAGGCAATGGGAGCCTTCTGGCAGGTAGACGAAGCTTGCTAAGACTTAT  149
      ||||||||| |||||||||||||| |||||||| ||||||||||||||| 
seq2  TGAGGCAAT-GGAGCCTTCTGGCAAGTAGACGAGGCTTGCTAAGACTTAA  144

seq1  TAC-AGCTAGCTGGGCTGTGTGAACCAGAGTCC-AGGAGAGGGTAAAGTG  197
      ||| ||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TACAAGCTAGCTGGGCTGTGTGAACCAGAGTCCAAGGAGA-GGTAAAGTG  193

seq1  GAGTTCAGGAAAG-CCAAGGTCAGA-GGAGAAGAAATGTTGTGGCCCAGG  245
      ||||||||| ||| ||||||||||| ||||||||||||||||||||||||
seq2  GAGTTCAGGCAAGCCCAAGGTCAGAGGGAGAAGAAATGTTGTGGCCCAGG  243

seq1  GGACCCACTCTCCTACCTC-AGTTTCACATCCTGAGTTCAAATCCTCATC  294
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGACCCACTCTCCTACCTCAAGTTTCACATCCTGAGTTCAAATCCTCATC  293

seq1  TCTGAAAGATCAAAGCCTTGGAGAACATTTCCATGTAGGAAGGGCTCAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGATCAAAGCCTTGGAGAACATTTCCATGTAGGAAGGGCTCAGC  343

seq1  TCAACTATCCTTTAATGAACACCTGCTATATTCAGGAAGACACAGTGTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATCCTTTAATGAACACCTGCTATATTCAGGAAGACACAGTGTAA  393

seq1  ATACAGTATAGTCCATGACCTACAGACTTAACACCAGCCAGTGGAAGGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTATAGTCCATGACCTACAGACTTAACACCAGCCAGTGGAAGGAT  443

seq1  GTGCAGTGCAGGAAGAAGGAGCTATAGATGACTGAACAATTCCAGGGCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGCAGGAAGAAGGAGCTATAGATGACTGAACAATTCCAGGGCAA  493

seq1  AAGATACTTCTCCTGCATTCAGGGAGGCCAGGAACATAAGTGGTCAAAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTCTCCTGCATTCAGGGAGGCCAGGAACATAAGTGGTCAAAAG  543

seq1  TCACCACCCATGACTTCCTAGCTTCATTTCTGTTGCTGTGGCAAATGCCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCCATGACTTCCTAGCTTCATTTCTGTTGCTGTGGCAAATGCCC  593

seq1  TGATTAAAAGGTAGCATGGGGAGGGAAGGGATCATTTGACTTCCTCAAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAAGGTAGCATGGGGAGGGAAGGGATCATTTGACTTCCTCAAGC  643

seq1  CCACATTACAGTCTAGTGTTGTGGAGAAGCCAGGGCAGGAACCTGAAGTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTACAGTCTAGTGTTGTGGAGAAGCCAGGGCAGGAACCTGAAGTA  693

seq1  TCACATCAACAGTCAAGAGCACAGAGAATAAACACATGCACCCTTGCTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCAACAGTCAAGAGCACAGAGAATAAACACATGCACCCTTGCTTG  743

seq1  TTCTCAGTTAGTTTTCTTCACTCTTACACAGTTCAAGGCCCAGCCAAGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTTAGTTTTCTTCACTCTTACACAGTTCAAGGCCCAGCCAAGGA  793

seq1  AATGGTGCCACCCACAATGGACTGAGTCTTCCTACATTAATTAACAATGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGCCACCCACAATGGACTGAGTCTTCCTACATTAATTAACAATGA  843

seq1  AGACAAGTCCCTATAGACATGCCCACAAGCCAAACTTATCTAGTCAATTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTCCCTATAGACATGCCCACAAGCCAAACTTATCTAGTCAATTC  893

seq1  TTCATAAAGACTCTCTTCCCTGGTGATCCTAGATTGTGTCAAGAGGGCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAGACTCTCTTCCCTGGTGATCCTAGATTGTGTCAAGAGGGCAT  943

seq1  TTCAAACCAACCAACACAGAGGGGTGTAGCGGGGCATGCCTTTACTTCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCAACCAACACAGAGGGGTGTAGCGGGGCATGCCTTTACTTCCA  993

seq1  GAACTCAGGACGTAGACGGGCTGATCTTGTGAGTTCACGGCCAGCGTTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGACGTAGACGGGCTGATCTTGTGAGTTCACGGCCAGCGTTGT  1043

seq1  CTACACAGTGAA  1056
      ||||||||||||
seq2  CTACACAGTGAA  1055