BAC Information

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BAC

Clone NameB6Ng01-013J19
Chromosome1 (Build37)
Map Location 121,592,951 - 121,766,498
singlet/doubletdoublet
Overlap genePtpn4, LOC100042447, LOC666870
Upstream geneLOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5
Downstream geneLOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J19.bB6Ng01-013J19.g
ACCDH848384DH848385
length8551,042
definitionDH848384|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J19, 5' end.DH848385|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,592,951 - 121,593,805)(121,765,466 - 121,766,498)
sequence
gaattctttttgaaatgtattattttactttttatgtgtgtaagtgtttt
atctgcatgtatgtctatataccaaatgcatgcctagtgctagaactgga
ttctctggtacttgagttataattatgagctttcatttgagtgctagaaa
ctgaatctggggcttgtacaagagcagttaagtgttctgaagtgaagcat
ctttctagaactgaaaacagttttcatgagaatactgaccattaagccat
tattgagctattatctatctctgagatggcagaatatcactgagtgaaaa
aagggttgctgcctctttgcacaaaggtaggaaagttgatgtgtaagggt
acatggctctgatactcaaggacagagctgtcttactttggagtactgat
aatagatgcctaaatggcattatcattttaaagaataccctttaccttcc
ttcagggatgacatcaggcttatgcatatgacttgtttggtggataaaat
atggattgcgtatcatgtgctatctccaaaaaggaagctttaagaaatag
ttcatgaaatattattaatcttcttccttggccagagacttgtcacttca
agtcctggtatgaagataatacagaaaagagtcacaagtgttgaatctga
acatagagtgataacagtagtagcaaacattccaattatgtaagtaagac
ttaattgctatcacagcacaatgtaatccaagataacagaaatggctaga
gtgacctttgatatattctttcccttagcagtagagacaagaacttcttc
agaagattcctgctagaaaaccaatagtttgagggagagggagagagagg
ggttt
gaattcatcgttaaaatctctgcacatcctttcttggttcgtgtgtacag
gggcaggcttactggcaccacctccatccatccctggaattacagcactg
gctttttatgaatgtgatggggatccaactcgggtcctcagataagcatc
acaaacatgtcacccaccacgccctttccccaccagcaacttgttttgac
cccttttccctctcctctccctcctcactctcctttccccgggttaaaga
tgggtaacgccatgactggcacctcttcagtttggcagctctgttaccct
aaacttgaagtagatgtagcagctatggggagggctctctcagccagtta
cttacaaaaggatggcatataggttctccagagacatcaccagcagctgc
aaacaatatcaatgttcaaagtatgggtgaagggtgttgcttataggttc
tgtgccagcaggtgggaagcctaagacagtgacatcccttagggtgtctc
ttcatctgtccctggctgtttggctggggagaatggggggactgtataga
tcctgtccacaggttctcattatatccctgtaatagtctgcaagagtcag
tgataatcagctttttattttccccagaggaaagaaactggggccaaaga
actaaaagcaacttgcggaagtttcttcagctcagctgtgggggcttacg
ctgaccccgaaacccagcacccttcccaccgcccagcccttttcctttct
tgggtaccctccattattagaccacctggatattcttagctaacattgga
cgacaaaataaatgcacggtcatttccccacattttccgcacaggtcccc
ctgcagaatggcccaagccctttctctgaacaccagctttgaaaaggcac
cgtgcagaatgggaaaagacaggatcagcattaatcatcccaaaaacgct
cagccagctttgcaggaaagaaatgggctgcagggataatggcaactggg
ggccttctgtgggaaaacctcaagtaaaagtttctgtggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_121592951_121593805
seq2: B6Ng01-013J19.b_49_903

seq1  GAATTCTTTTTGAAATGTATTATTTTACTTTTTATGTGTGTAAGTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGAAATGTATTATTTTACTTTTTATGTGTGTAAGTGTTTT  50

seq1  ATCTGCATGTATGTCTATATACCAAATGCATGCCTAGTGCTAGAACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGTATGTCTATATACCAAATGCATGCCTAGTGCTAGAACTGGA  100

seq1  TTCTCTGGTACTTGAGTTATAATTATGAGCTTTCATTTGAGTGCTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGTACTTGAGTTATAATTATGAGCTTTCATTTGAGTGCTAGAAA  150

seq1  CTGAATCTGGGGCTTGTACAAGAGCAGTTAAGTGTTCTGAAGTGAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTGGGGCTTGTACAAGAGCAGTTAAGTGTTCTGAAGTGAAGCAT  200

seq1  CTTTCTAGAACTGAAAACAGTTTTCATGAGAATACTGACCATTAAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGAACTGAAAACAGTTTTCATGAGAATACTGACCATTAAGCCAT  250

seq1  TATTGAGCTATTATCTATCTCTGAGATGGCAGAATATCACTGAGTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGCTATTATCTATCTCTGAGATGGCAGAATATCACTGAGTGAAAA  300

seq1  AAGGGTTGCTGCCTCTTTGCACAAAGGTAGGAAAGTTGATGTGTAAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGCTGCCTCTTTGCACAAAGGTAGGAAAGTTGATGTGTAAGGGT  350

seq1  ACATGGCTCTGATACTCAAGGACAGAGCTGTCTTACTTTGGAGTACTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTCTGATACTCAAGGACAGAGCTGTCTTACTTTGGAGTACTGAT  400

seq1  AATAGATGCCTAAATGGCATTATCATTTTAAAGAATACCCTTTACCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGCCTAAATGGCATTATCATTTTAAAGAATACCCTTTACCTTCC  450

seq1  TTCAGGGATGACATCAGGCTTATGCATATGACTTGTTTGGTGGATAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATGACATCAGGCTTATGCATATGACTTGTTTGGTGGATAAAAT  500

seq1  ATGGATTGCGTATCATGTGCTATCTCCAAAAAGGAAGCTTTAAGAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTGCGTATCATGTGCTATCTCCAAAAAGGAAGCTTTAAGAAATAG  550

seq1  TTCATGAAATATTATTAATCTTCTTCCTTGGCCAGAGACTTGTCACTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAATATTATTAATCTTCTTCCTTGGCCAGAGACTTGTCACTTCA  600

seq1  AGTCCTGGTATGAAGATAATACAGAAAAGAGTCACAAGTGTTGAATCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGTATGAAGATAATACAGAAAAGAGTCACAAGTGTTGAATCTGA  650

seq1  ACATAGAGTGATAACAGTAGTAGCAAACATTCCAATTATGTAAGTAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTGATAACAGTAGTAGCAAACATTCCAATTATGTAAGTAAGAC  700

seq1  TTAATTGCTATCACAGCACAATGTAATCCAAGATAACAGAAATGGCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCTATCACAGCACAATGTAATCCAAGATAACAGAAATGGCTAGA  750

seq1  GTGACCTTTGATATATTCTTTCCCTTAGCAGTAGAGACAAGAACTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTTGATATATTCTTTCCCTTAGCAGTAGAGACAAGAACTTCTTC  800

seq1  AGAAGATTCCTGCTAGAAAACCAATAGTTTGAGGGAGAGGGAGAGAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTCCTGCTAGAAAACCAATAGTTTGAGGGAGAGGGAGAGAGAGG  850

seq1  GGTTT  855
      |||||
seq2  GGTTT  855

seq1: chr1_121765466_121766498
seq2: B6Ng01-013J19.g_69_1110 (reverse)

seq1  ACCCCACAGAAGCCTCTACCCTGGAG--TCTCCCACAGCAGGCCCCCAGC  48
      ||||||||||| | | ||  || |||  | |||||||| |||||||||| 
seq2  ACCCCACAGAAACTTTTA--CTTGAGGTTTTCCCACAGAAGGCCCCCAGT  48

seq1  TGCCAATCTTCCCTGCAGCCCATTTCTCTCCTGCAAAGCTGGTCTGAGCT  98
      |||| ||  |||||||||||||||||| |||||||||||||| |||||| 
seq2  TGCC-ATTATCCCTGCAGCCCATTTCTTTCCTGCAAAGCTGG-CTGAGCG  96

seq1  GTTCTGGGATGATTAATGCTGATCCTGTCTTT--CCATTCTGCACGGTGC  146
       || ||||||||||||||||||||||||||||  ||||||||||||||||
seq2  TTTTTGGGATGATTAATGCTGATCCTGTCTTTTCCCATTCTGCACGGTGC  146

seq1  CTTTTC-AAGCT-GTGTTCAGAGAAAGGGCTT-GGCCA-TCTGCA-GGGG  191
      |||||| ||||| ||||||||||||||||||| ||||| |||||| ||||
seq2  CTTTTCAAAGCTGGTGTTCAGAGAAAGGGCTTGGGCCATTCTGCAGGGGG  196

seq1  ACCTGTGCGG-AAATGTGGGGAAATGACCGTGCATTTATTTATGTCGTCC  240
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  ACCTGTGCGGAAAATGTGGGGAAATGACCGTGCATTTATTT-TGTCGTCC  245

seq1  ATTGTTAGCTAAGAATATCCAGGTGGTCTAATAATGGA-GGTA-CCAAGA  288
      | |||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AATGTTAGCTAAGAATATCCAGGTGGTCTAATAATGGAGGGTACCCAAGA  295

seq1  AAGGAAAAGGGCTGGGCGGTGGGAAGGGTGCTGGGTTTCGGGGTCAGCGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGGGCTGGGCGGTGGGAAGGGTGCTGGGTTTCGGGGTCAGCGT  345

seq1  AAG-CCCCACAGCTGAGCTGAAGAAACTTCCGCAAGTTGCTTTTAGTTCT  387
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCACAGCTGAGCTGAAGAAACTTCCGCAAGTTGCTTTTAGTTCT  395

seq1  TTGGCCCCAGTTTC-TTCCTCTGGGGAAAATAAAAAGCTGATTATCACTG  436
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGCCCCAGTTTCTTTCCTCTGGGGAAAATAAAAAGCTGATTATCACTG  445

seq1  ACTCTTGCAGACTATTACAGGGATATAATGAGAACCTGTGGACAGGATCT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCAGACTATTACAGGGATATAATGAGAACCTGTGGACAGGATCT  495

seq1  ATACAGTCCCCCCATTCTCCCCAGCCAAACAGCCAGGGACAGATGAAGAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCCCCCCATTCTCCCCAGCCAAACAGCCAGGGACAGATGAAGAG  545

seq1  ACACCCTAAGGGATGTCACTGTCTTAGGCTTCCCACCTGCTGGCACAGAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTAAGGGATGTCACTGTCTTAGGCTTCCCACCTGCTGGCACAGAA  595

seq1  CCTATAAGCAACACCCTTCACCCATACTTTGAACATTGATATTGTTTGCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAGCAACACCCTTCACCCATACTTTGAACATTGATATTGTTTGCA  645

seq1  GCTGCTGGTGATGTCTCTGGAGAACCTATATGCCATCCTTTTGTAAGTAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGTGATGTCTCTGGAGAACCTATATGCCATCCTTTTGTAAGTAA  695

seq1  CTGGCTGAGAGAGCCCTCCCCATAGCTGCTACATCTACTTCAAGTTTAGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAGAGAGCCCTCCCCATAGCTGCTACATCTACTTCAAGTTTAGG  745

seq1  GTAACAGAGCTGCCAAACTGAAGAGGTGCCAGTCATGGCGTTACCCATCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGAGCTGCCAAACTGAAGAGGTGCCAGTCATGGCGTTACCCATCT  795

seq1  TTAACCCGGGGAAAGGAGAGTGAGGAGGGAGAGGAGAGGGAAAAGGGGTC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCGGGGAAAGGAGAGTGAGGAGGGAGAGGAGAGGGAAAAGGGGTC  845

seq1  AAAACAAGTTGCTGGTGGGGAAAGGGCGTGGTGGGTGACATGTTTGTGAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTTGCTGGTGGGGAAAGGGCGTGGTGGGTGACATGTTTGTGAT  895

seq1  GCTTATCTGAGGACCCGAGTTGGATCCCCATCACATTCATAAAAAGCCAG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTGAGGACCCGAGTTGGATCCCCATCACATTCATAAAAAGCCAG  945

seq1  TGCTGTAATTCCAGGGATGGATGGAGGTGGTGCCAGTAAGCCTGCCCCTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATTCCAGGGATGGATGGAGGTGGTGCCAGTAAGCCTGCCCCTG  995

seq1  TACACACGAACCAAGAAAGGATGTGCAGAGATTTTAACGATGAATTC  1033
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACGAACCAAGAAAGGATGTGCAGAGATTTTAACGATGAATTC  1042