BAC Information

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BAC

Clone NameB6Ng01-014D13
Chromosome1 (Build37)
Map Location 59,116,721 - 59,246,816
singlet/doubletdoublet
Overlap geneAls2cr11, Als2cr4, Mpp4, Als2
Upstream geneAox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447
Downstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014D13.bB6Ng01-014D13.g
ACCDH848825DH848826
length1,1551,076
definitionDH848825|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D13, 5' end.DH848826|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,116,721 - 59,117,579)(59,245,724 - 59,246,816)
sequence
gaattcccaagattgtcgggaacactgggatcagctatcacaacatggaa
accaacaagaggtcaagattctaaaccaccacacactctcttattgcaat
ttaagatgacaaggttgctcatacaaatagtttggaaattttttcaaaac
tttaaactgggaattaccatgtggcctagcagctgttcctggactttcat
gcaggaaaactaaaaaagtatacaagaaagccaagcacactgatccacat
cagtcatctcggcactggggaggctgaggcaggaggattttgggattgtc
agcaagtttaagactagcctacatagtgagaccccatctcaagaaaaaca
acagaagtctactcatgaatgctcactgtggtgcccttcactgtagctca
ttagtataaataacctcaaagttcatcagcagatgaacacagagacaaat
gtagtttatccatacaacagagatgtatctagaaacaaattcagtgttgc
tatatactacaaatggaaaacatggtaagggaaaaagtaagctacaaagg
accatgtgttatatgcagtgagtgccacttttaggaattgtctgggatag
gcaagcatatacagaagagtaacacagactggctgtttgcagagggctgg
aaggcagtgagagacctgaggaagttctcactcatggtgtgaggctacct
ctgtttaaataacgaaaaatgtctacaattgactgtggtgatggatacac
agcttggtggacagactaaatgccactgaagcgcagctttaaactggccc
gttaactgaaccttagaaatcatgaataaacatttatggaatgacacatt
gttaatatagaaaagattatgaagtatgagtagcattttatataaaggta
ataagcaattatctgatcaaacattgttatcaattcatatttctactaaa
tatgtatttgcatactacatataaaagaatacattttgttattaccttat
atcccttttgtcattttggataataagtttctaaatatcagctttttcta
tcatgtactcaatatttttaaactctcttcattctttcaacctaaacaaa
gaattcagctaaggaaatgaaacaaagccaggtgacagggagaagtgtga
ataaa
gaattctcatctagacactctgacatcagtctgttcttttaactactcca
cttataggattttttttctcttatgtaagctactaactggaccattgcat
tgtcttgtgtgtttttataagttcccaggagacaaagatcatggcctttg
gtcacttagaaacttattgtttcttaaatgactgtggcaaactgtgagac
cttgggatgtaattactcatgaatgggagggcctggcctttcatctcacc
tttgctcattcgcacatgcacatcagttacactttctcatgggagttggt
ttcctttgctttgctttggtttgctttggttttggtttgctttggttagc
tttttaaagcagggtttctctgtatatctctggctgtcctggaactttgt
agaccaggcaagcctcgaactaagatatctgtctccctctgcctcctgag
tgatgggattaaatgtgtttgcctttgttaaagggttttgtttttgtttt
taattaaaaatggcagtatatgtgtgagcattttgcccacatgtatgtgt
gtgcaccgtgtgcttggctggggcctatggaagtcagaagagggcatcag
aatccctgacactgagcttacagatggtttggctctgaaggcttggtgca
tagacccccagatacttttgagggtttgcaaggtcggagtgctttgctga
cacaggaagacattgctttttctctgtagtgtacgcattggtaatgcaca
agctgaagtcacagcatgaaccaaggcaagtgacaccacaccacaccaca
ccagcctcaagcctgcagttaagaccaacactactaattccctgaaaggt
tgtccaggatgaaccatacggatgactgtatgctgtactctaggctgccc
ttgaacttgtggcagtccttctctgtcagcttccaagcgctgggagtgga
tgctgtcaactgaactattagagcaaaatacatgagacatgtgtttgtat
ttgagctgacatttcccaatattagatatctttctgatgaaaagtaccaa
ggttattttggtgtaaaagtattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59116721_59117579
seq2: B6Ng01-014D13.b_349_1202

seq1  GCAAGTTTAAGACTAGCCTACATAGTGAGACCCCATCTCAAGAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTAAGACTAGCCTACATAGTGAGACCCCATCTCAAGAAAAACAA  50

seq1  CAGAAGTCTACTCATGAATGCTCACTGTGGTGCCCTTCACTGTAGCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCTACTCATGAATGCTCACTGTGGTGCCCTTCACTGTAGCTCAT  100

seq1  TAGTATAAATAACCTCAAAGTTCATCAGCAGATGAACACAGAGACAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAATAACCTCAAAGTTCATCAGCAGATGAACACAGAGACAAATG  150

seq1  TAGTTTATCCATACAACAGAGATGTATCTAGAAACAAATTCAGTGTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATCCATACAACAGAGATGTATCTAGAAACAAATTCAGTGTTGCT  200

seq1  ATATACTACAAATGGAAAACATGGTAAGGGAAAAAGTAAGCTACAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTACAAATGGAAAACATGGTAAGGGAAAAAGTAAGCTACAAAGGA  250

seq1  CCATGTGTTATATGCAGTGAGTGCCACTTTTAGGAATTGTCTGGGATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTTATATGCAGTGAGTGCCACTTTTAGGAATTGTCTGGGATAGG  300

seq1  CAAGCATATACAGAAGAGTAACACAGACTGGCTGTTTGCAGAGGGCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATATACAGAAGAGTAACACAGACTGGCTGTTTGCAGAGGGCTGGA  350

seq1  AGGCAGTGAGAGACCTGAGGAAGTTCTCACTCATGGTGTGAGGCTACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGAGAGACCTGAGGAAGTTCTCACTCATGGTGTGAGGCTACCTC  400

seq1  TGTTTAAATAACGAAAAATGTCTACAATTGACTGTGGTGATGGATACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATAACGAAAAATGTCTACAATTGACTGTGGTGATGGATACACA  450

seq1  GCTTGGTGGACAGACTAAATGCCACTGAAGCGCAGGCTTTAAACTGGCCC  500
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTTGGTGGACAGACTAAATGCCACTGAAGCGCA-GCTTTAAACTGGCCC  499

seq1  GTTAACTGAACCTTAGAAATCATGAATAAACATTTATGGAATGACACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTGAACCTTAGAAATCATGAATAAACATTTATGGAATGACACATT  549

seq1  GTTAATATAGAAAAGATTATGAAGTATGAGTAGCATTTTATATAAAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATAGAAAAGATTATGAAGTATGAGTAGCATTTTATATAAAGGTA  599

seq1  ATAAGCAATTATCTGATCAAACATTGTTATCAATTCATATTTCTACTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAATTATCTGATCAAACATTGTTATCAATTCATATTTCTACTAAA  649

seq1  TATGTATTTGCATACTACATATAAAAGAATACATTTTGTTATTACCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGTATTTGCATACTACATATAAAAGAATACATTTTGTTATTACCTTA-  698

seq1  TATCCCTTTTTGTCATTTTTGGATTAATAAGGTTTCTTAAATAATCAGCT  750
      |||||| |||||||| ||||||| |||||| ||||| ||||| |||||||
seq2  TATCCC-TTTTGTCA-TTTTGGA-TAATAA-GTTTC-TAAAT-ATCAGCT  742

seq1  TTTTCTATCCATGTACTC-ATATTTTTATACTCCTCTTTCATTCTTTCCA  799
      |||||||| ||||||||| ||||||||| ||| ||| |||||||||| ||
seq2  TTTTCTAT-CATGTACTCAATATTTTTAAACT-CTC-TTCATTCTTT-CA  788

seq1  ACCTAAACAAAGAAATCAGCTA--GAGATGAAACAAAGCCA-GTGACA-G  845
      |||||||||||||| |||||||  || |||||||||||||| |||||| |
seq2  ACCTAAACAAAGAATTCAGCTAAGGAAATGAAACAAAGCCAGGTGACAGG  838

seq1  GAG-AGTGTG-ATAAA  859
      ||| |||||| |||||
seq2  GAGAAGTGTGAATAAA  854

seq1: chr1_59245724_59246816
seq2: B6Ng01-014D13.g_70_1145 (reverse)

seq1  AATAATACCTTTTATACACCAAAAAATAACATTGGTACTTTTTTCATCAG  50
      ||||||||   || ||||||  |||||||| |||||||  ||||||||||
seq2  AATAATAC---TTTTACACC--AAAATAACCTTGGTAC--TTTTCATCAG  43

seq1  AAAGATATTCTAAATATTGAGAAATTGTCAAGCTCAAAATTACAAACACA  100
      ||||||| ||| ||||||| |||| |||| ||||||||  ||||||||||
seq2  AAAGATA-TCT-AATATTGGGAAA-TGTC-AGCTCAAA--TACAAACACA  87

seq1  TGTCTCCATGTATTTTGCTCTTAATAGTTCAGTTTGACAGGCATCCACTC  150
      ||||| |||||||||||||| ||||||||||| |||||| ||||||||||
seq2  TGTCT-CATGTATTTTGCTC-TAATAGTTCAG-TTGACA-GCATCCACTC  133

seq1  CCAGCGCTTTGGAAGCTGACAGAGAAGGACTGCCACAAGTTCAAGGGCAG  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGC-TTGGAAGCTGACAGAGAAGGACTGCCACAAGTTCAAGGGCAG  182

seq1  CCTAGAGTACAGCATACAGTCATCCGTATGGTTCATCCTGGAC-ACCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTAGAGTACAGCATACAGTCATCCGTATGGTTCATCCTGGACAACCTTT  232

seq1  CAGGGAATTAGTAGTGTTGGTCTTAACTGCAGGCTTGAGGCTGGTGTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATTAGTAGTGTTGGTCTTAACTGCAGGCTTGAGGCTGGTGTGGT  282

seq1  GTGGTGTGGTGTCACTTGCCTTGGTTCCTGCTGTGACTTCAGCTTGTGCA  349
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGGTGTGGTGTCACTTGCCTTGGTTCATGCTGTGACTTCAGCTTGTGCA  332

seq1  TTACCAATGCGTACACTACAGAGAAAAAGCAATGTCTTCCTGTGTCAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATGCGTACACTACAGAGAAAAAGCAATGTCTTCCTGTGTCAGCA  382

seq1  AAGCACTCCGACCTTGCAAACCCTCAAAAGTATCTGGGGGTCTATGCACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCCGACCTTGCAAACCCTCAAAAGTATCTGGGGGTCTATGCACC  432

seq1  AAGCCTTCAGAGCCAAACCATCTGTAAGCTCAGTGTCAGGGATTCTGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCAGAGCCAAACCATCTGTAAGCTCAGTGTCAGGGATTCTGATG  482

seq1  CCCTCTTCTGACTTCCATAGGCCCCAGCCAAGCACACGGTGCACACACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGACTTCCATAGGCCCCAGCCAAGCACACGGTGCACACACAT  532

seq1  ACATGTGGGCAAAATGCTCACACATATACTGCCATTTTTAATTAAAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGGCAAAATGCTCACACATATACTGCCATTTTTAATTAAAAACA  582

seq1  AAAACAAAACCCTTTAACAAAGGCAAACACATTTAATCCCATCACTCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACCCTTTAACAAAGGCAAACACATTTAATCCCATCACTCAGG  632

seq1  AGGCAGAGGGAGACAGATATCTTAGTTCGAGGCTTGCCTGGTCTACAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGGAGACAGATATCTTAGTTCGAGGCTTGCCTGGTCTACAAAG  682

seq1  TTCCAGGACAGCCAGAGATATACAGAGAAACCCTGCTTTAAAAAGCTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGAGATATACAGAGAAACCCTGCTTTAAAAAGCTAAC  732

seq1  CAAAGCAAACCAAAACCAAAGCAAACCAAAGCAAAGCAAAGGAAACCAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAACCAAAACCAAAGCAAACCAAAGCAAAGCAAAGGAAACCAAC  782

seq1  TCCCATGAGAAAGTGTAACTGATGTGCATGTGCGAATGAGCAAAGGTGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAGAAAGTGTAACTGATGTGCATGTGCGAATGAGCAAAGGTGAG  832

seq1  ATGAAAGGCCAGGCCCTCCCATTCATGAGTAATTACATCCCAAGGTCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGCCAGGCCCTCCCATTCATGAGTAATTACATCCCAAGGTCTCA  882

seq1  CAGTTTGCCACAGTCATTTAAGAAACAATAAGTTTCTAAGTGACCAAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCCACAGTCATTTAAGAAACAATAAGTTTCTAAGTGACCAAAGG  932

seq1  CCATGATCTTTGTCTCCTGGGAACTTATAAAAACACACAAGACAATGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCTTTGTCTCCTGGGAACTTATAAAAACACACAAGACAATGCAA  982

seq1  TGGTCCAGTTAGTAGCTTACATAAGAGAAAAAAAATCCTATAAGTGGAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGTTAGTAGCTTACATAAGAGAAAAAAAATCCTATAAGTGGAGT  1032

seq1  AGTTAAAAGAACAGACTGATGTCAGAGTGTCTAGATGAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGAACAGACTGATGTCAGAGTGTCTAGATGAGAATTC  1076