BAC Information

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BAC

Clone NameB6Ng01-014N05
Chromosome1 (Build37)
Map Location 7,095,514 - 7,247,526
singlet/doubletdoublet
Overlap genePcmtd1, LOC545302
Upstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608
Downstream geneLOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014N05.bB6Ng01-014N05.g
ACCDH849259DH849260
length1,085669
definitionDH849259|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N05, 5' end.DH849260|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,246,462 - 7,247,526)(7,095,514 - 7,096,186)
sequence
gaattctatatccaaaaattgtgcttggtgcagcagaactgtcaactctt
agatattctattatggaggtaaaatcctttggtgatgtgagggacattca
agtacatcctttttataatgaactcaaatgtccaaaaactgttattttat
gtttgtaccacagtaagagccagattttaagctctactaaaaacaaaaca
aagagactttatctatttatgttcattaaaaatcctaatagtgatatatt
aattttaaataacatacagttaatatatttggagttatttaaagtttata
ttgagaaaaatgcatgtattttcagtattgtggtacacaaatatttacat
aagactattcaactgattgttttatatcaaacaacttttataatactgat
ttttatatttacaatattttatgacttttaaagaatatgaaaaaaaaaca
aaaggtattgttggttttgaagaagggctctctgggaggagttgcggtac
aaaagggaaagaagaatgtgatgtaagtctatttactcagaatatgtttt
taaatgttaacaaatttagacaattggaattatgtgtcttttctcatcat
aatgtaataaaacttaaatcaaataaataaatctttaaaaaaaagaaaca
ttactgaagctcaaagcacacattgcacctcacaaaataatagtgggaga
cttcaacatcccactctcaacaatggacagatcatggaaacacaaactaa
acagagacacattgaaactaacagaagttgtggaccaaatggatttaaca
gatatctatagaacatttcatcctaaatcaaaagaatataccatcttctc
agcatctcatggtgccttctccaaaactgaccatatagtagtcacaaatc
agacttcaacagatataagaagattgaaatatcccatgcatcctatcaga
tcactatagattaaggttggtcttcataccacaagacaacagaaatctca
cacacacaaaaagagatcatgctctactcaatcatactggtcaaggtgcc
gggagtgtggctcacgcttatcccaacaccgggag

gaattcagtccccaggtcttaattttggaaggattgcaagatttcccaaa
tcctttcaggtgagaatgtgtgagcaggagcgttgtttcctacctcactg
tgcccataggcgcacactagagaaaatgctgaagagtaagtcagcatttt
gtgacttgtgagggagtgatgactttctttttcttttctttctctctctc
tttctttcttgtgttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttcttttaaataaaggtttatttattattat
atctaagcacactgtagctgtcttcagatgcaccagaagagggtgtcaga
tctcattacggagtggttgctggtatttaaactcagtaccttcagaagag
cagctggtgctcttaacctctgagccatctctccagccctgaacgatgac
ttttgtatcagacataactgctgagtgcttaaactcttcagtcttttatt
gtcactcctttagttagcgctgtgcattttctttgtttttattgtttaac
agagaatgtgaacacttcctaaaatgttttctcctccattgttttcttct
ccaaggaagagaaaaattgtcggaggggacagtacaagttgtgaccaaag
taatagacatattgagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7246462_7247526
seq2: B6Ng01-014N05.b_84_1133 (reverse)

seq1  CTCCCGGTGTTGGGATTAAAGGCGTGAGCCACCACTCCCGGCACCCTTGA  50
      ||||||||||||||||   | |||||||||| ||||||||||| ||||||
seq2  CTCCCGGTGTTGGGAT---AAGCGTGAGCCA-CACTCCCGGCA-CCTTGA  45

seq1  CCAAGTTATGATTGAGTAGAGCATTGATCTCCTTTTTTGTGTGTGTGAGA  100
      |||   ||||||||||||||||| |||||||  |||||||||||||||||
seq2  CCA--GTATGATTGAGTAGAGCA-TGATCTC--TTTTTGTGTGTGTGAGA  90

seq1  TTTCTGTTGTCTTTGTTGGTATTGAAGACCAACCTTAATCTATAGTGATC  150
      |||||||||||||   ||||| ||||||||||||||||||||||||||||
seq2  TTTCTGTTGTCTT--GTGGTA-TGAAGACCAACCTTAATCTATAGTGATC  137

seq1  TGATAGGATGCATGGGATTATTTCAATCTTCTTATATCTGTTGAAGTCTG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGATAGGATGCATGGGA-TATTTCAATCTTCTTATATCTGTTGAAGTCTG  186

seq1  ATTTGTGACCTACTATATGGTCAGTTTTGGAGAAGGCACCATGAGATGCT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGA-CTACTATATGGTCAGTTTTGGAGAAGGCACCATGAGATGCT  235

seq1  GAGAAGATGGTATATTCTTTTGATTTAGGATGAAATGTTCTATAGATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATGGTATATTCTTTTGATTTAGGATGAAATGTTCTATAGATATC  285

seq1  TGTTAAATCCATTTGGTCCACAACTTCTGTTAGTTTCAATGTGTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATCCATTTGGTCCACAACTTCTGTTAGTTTCAATGTGTCTCTGT  335

seq1  TTAGTTTGTGTTTCCATGATCTGTCCATTGTTGAGAGTGGGATGTTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGTGTTTCCATGATCTGTCCATTGTTGAGAGTGGGATGTTGAAG  385

seq1  TCTCCCACTATTATTTTGTGAGGTGCAATGTGTGCTTTGAGCTTCAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACTATTATTTTGTGAGGTGCAATGTGTGCTTTGAGCTTCAGTAA  435

seq1  TGTTTCTTTTTTTTAAAGATTTATTTATTTGATTTAAGTTTTATTACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTTTTTTAAAGATTTATTTATTTGATTTAAGTTTTATTACATT  485

seq1  ATGATGAGAAAAGACACATAATTCCAATTGTCTAAATTTGTTAACATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGAAAAGACACATAATTCCAATTGTCTAAATTTGTTAACATTTA  535

seq1  AAAACATATTCTGAGTAAATAGACTTACATCACATTCTTCTTTCCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATTCTGAGTAAATAGACTTACATCACATTCTTCTTTCCCTTTT  585

seq1  GTACCGCAACTCCTCCCAGAGAGCCCTTCTTCAAAACCAACAATACCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGCAACTCCTCCCAGAGAGCCCTTCTTCAAAACCAACAATACCTTT  635

seq1  TGTTTTTTTTTCATATTCTTTAAAAGTCATAAAATATTGTAAATATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTCATATTCTTTAAAAGTCATAAAATATTGTAAATATAAAA  685

seq1  ATCAGTATTATAAAAGTTGTTTGATATAAAACAATCAGTTGAATAGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATTATAAAAGTTGTTTGATATAAAACAATCAGTTGAATAGTCTT  735

seq1  ATGTAAATATTTGTGTACCACAATACTGAAAATACATGCATTTTTCTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATATTTGTGTACCACAATACTGAAAATACATGCATTTTTCTCAA  785

seq1  TATAAACTTTAAATAACTCCAAATATATTAACTGTATGTTATTTAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTTTAAATAACTCCAAATATATTAACTGTATGTTATTTAAAATT  835

seq1  AATATATCACTATTAGGATTTTTAATGAACATAAATAGATAAAGTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCACTATTAGGATTTTTAATGAACATAAATAGATAAAGTCTCTT  885

seq1  TGTTTTGTTTTTAGTAGAGCTTAAAATCTGGCTCTTACTGTGGTACAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTAGTAGAGCTTAAAATCTGGCTCTTACTGTGGTACAAAC  935

seq1  ATAAAATAACAGTTTTTGGACATTTGAGTTCATTATAAAAAGGATGTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAACAGTTTTTGGACATTTGAGTTCATTATAAAAAGGATGTACT  985

seq1  TGAATGTCCCTCACATCACCAAAGGATTTTACCTCCATAATAGAATATCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCCCTCACATCACCAAAGGATTTTACCTCCATAATAGAATATCT  1035

seq1  AAGAGTTGACAGTTC  1065
      |||||||||||||||
seq2  AAGAGTTGACAGTTC  1050


seq1: chr1_7095514_7096186
seq2: B6Ng01-014N05.g_68_736

seq1  GAATTCAGTCCCCAGGTCTTAATTTTGGAAGGATTGCAAGATTTCCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCCAGGTCTTAATTTTGGAAGGATTGCAAGATTTCCCAAA  50

seq1  TCCTTTCAGGTGAGAATGTGTGAGCAGGAGCGTTGTTTCCTACCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAGGTGAGAATGTGTGAGCAGGAGCGTTGTTTCCTACCTCACTG  100

seq1  TGCCCATAGGCGCACACTAGAGAAAATGCTGAAGAGTAAGTCAGCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATAGGCGCACACTAGAGAAAATGCTGAAGAGTAAGTCAGCATTTT  150

seq1  GTGACTTGTGAGGGAGTGATGACTTTCTTTTTCTTTTCTTTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTGTGAGGGAGTGATGACTTTCTTTTTCTTTTCTTTCTCTCTCTC  200

seq1  TTTCTTTCTTGTGTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  250
      |||||||||||||    |||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTGTG----TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  246

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTTAAATAAAGGTTTATTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTTAAATAAAGGTTTATTTATTA  296

seq1  TTATATCTAAGCACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTAAGCACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGGTGT  346

seq1  CAGATCTCATTACGGAGTGGTTGCTGGTATTTAAACTCAGTACCTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCATTACGGAGTGGTTGCTGGTATTTAAACTCAGTACCTTCAGA  396

seq1  AGAGCAGCTGGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCTGAACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCTGGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCTGAACGA  446

seq1  TGACTTTTGTATCAGACATAACTGCTGAGTGCTTAAACTCTTCAGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTGTATCAGACATAACTGCTGAGTGCTTAAACTCTTCAGTCTTT  496

seq1  TATTGTCACTCCTTTAGTTAGCGCTGTGCATTTTCTTTGTTTTTATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCACTCCTTTAGTTAGCGCTGTGCATTTTCTTTGTTTTTATTGTT  546

seq1  TAACAGAGAATGTGAACACTTCCTAAAATGTTTTCTCCTCCATTGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGAATGTGAACACTTCCTAAAATGTTTTCTCCTCCATTGTTTTC  596

seq1  TTCTCCAAGGAAGAGAAAAATTGTCGGAGGGGACAGTACAAGTTGTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAGGAAGAGAAAAATTGTCGGAGGGGACAGTACAAGTTGTGACC  646

seq1  AAAGTAATAGACATATTGAGTGG  673
      |||||||||||||||||||||||
seq2  AAAGTAATAGACATATTGAGTGG  669


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