BAC Information

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BAC

Clone NameB6Ng01-014O01
Chromosome1 (Build37)
Map Location 195,376,073 - 195,538,284
singlet/doubletdoublet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014O01.bB6Ng01-014O01.g
ACCDH849296DH849297
length989372
definitionDH849296|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O01, 5' end.DH849297|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(195,376,073 - 195,377,063)(195,537,906 - 195,538,284)
sequence
gaattcttccactctatttctgcagctgtctgcactgtcttcactgcagg
gataggcaggataggtgtttggctccctctctgtctcttgggtactcagg
acctagcctggctcctggtacacagaaggtaatttgtgtataataaataa
gtataaatatattggaactaccaaggttatgaattacctctttaataaat
ctataaacactgttttatgcaaatgcaatgcacccatggggttcaaatgc
ccatgggttagagactagaagcatggagtagggtgtacatcctggtgtcc
agtgttctgttgtctttccctcacagagagctaagtgcccttaagatcat
aaacttagtgctagagatagaggagaccaagagcctggaccaaacgaccc
cctaaagttcattccaaaatggaaagtccacggacggcatagaatgcttt
gtgagacttcctgacacccacagggacagacatgttgatgacagcttctc
tcaggaaccagcgcctaacatttgtaggaacaaaatatgagccaatctcc
aggagcccgaaggctgtagggttgttatttcaaccctaaacaggcccgca
gagctactttgttggtttcctctgtcaacctatttgtgcagagtgttgat
aaccgatgtgacacacagcaaagactctttgtcttgttagacacttgcca
gggagtggagatgagcggagaaagatgggagttgaaaggaaggatgttta
gtttgaacacatgcatgagtgcctgccttccagagcccatgttaacattc
gctgacatccttttctccctgagacaggaccgtcttcatctccttgctcc
tttttattagtctccaaacaaagagactgtattccaggtgtgaacatatc
aaggaggttccctgtttgagattcagaaattcatagccccgagaaatgag
tttagagaggatagaagatatatgagagagaggactgag
tggcctctttgttgggtcacactggtattttctgcctgttactcacagtc
atcctatttatttacacaatacctgacatcttctctagctccatgagaat
cagctccatgagaattgaggttttgtttttctttttcctttttctttatt
tttaaagatttatttatttaatgtatgtgagtacactgtcactcttcagg
cacaccataatagggcatcagactctactacaaatggctgtaagccacca
tgtggtttctgggaattatactcaggacctctagaagagcagtcagtgct
cttaaccactgagccttctctcccgcctggggttttgtttttctaatgtt
ggaattcagacagtgagaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_195376073_195377063
seq2: B6Ng01-014O01.b_46_1034

seq1  GAATTCTTCCACTCTATTTCTGCAGCTGTCTGCACTGTCTTCACTGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCACTCTATTTCTGCAGCTGTCTGCACTGTCTTCACTGCAGG  50

seq1  GATAGGCAGGATAGGTGTTTGGCTCCCTCTCTGTCTCTTGGGTACTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCAGGATAGGTGTTTGGCTCCCTCTCTGTCTCTTGGGTACTCAGG  100

seq1  ACCTAGCCTGGCTCCTGGTACACAGAAGGTAATTTGTGTATAATAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCCTGGCTCCTGGTACACAGAAGGTAATTTGTGTATAATAAATAA  150

seq1  GTATAAATATATTGGAACTACCAAGGTTATGAATTACCTCTTTAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATATATTGGAACTACCAAGGTTATGAATTACCTCTTTAATAAAT  200

seq1  CTATAAACACTGTTTTATGCAAATGCAATGCACCCATGGGGTTCAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAACACTGTTTTATGCAAATGCAATGCACCCATGGGGTTCAAATGC  250

seq1  CCATGGGTTAGAGACTAGAAGCATGGAGTAGGGTGTACATCCTGGTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTTAGAGACTAGAAGCATGGAGTAGGGTGTACATCCTGGTGTCC  300

seq1  AGTGTTCTGTTGTCTTTCCCTCACAGAGAGCTAAGTGCCCTTAAGATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGTTGTCTTTCCCTCACAGAGAGCTAAGTGCCCTTAAGATCAT  350

seq1  AAACTTAGTGCTAGAGATAGAGGAGACCAAGAGCCTGGACCAAACGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGTGCTAGAGATAGAGGAGACCAAGAGCCTGGACCAAACGACCC  400

seq1  CCTAAAGTTCATTCCAAAATGGAAAGTCCACGGACGGCATAGAATGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTTCATTCCAAAATGGAAAGTCCACGGACGGCATAGAATGCTTT  450

seq1  GTGAGACTTCCTGACACCCACAGGGACAGACATGTTGATGACAGCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTTCCTGACACCCACAGGGACAGACATGTTGATGACAGCTTCTC  500

seq1  TCAGGAACCAGCGCCTAACATTTGTAGGAACAAAATATGAGCCAATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACCAGCGCCTAACATTTGTAGGAACAAAATATGAGCCAATCTCC  550

seq1  AGGAGCCCGAAGGCTGTAGGGTTGTTATTTCAACCCTAAACAGGCCCGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCCGAAGGCTGTAGGGTTGTTATTTCAACCCTAAACAGGCCCGCA  600

seq1  GAGCTACTTTGTTGGTTTCCTCTGTCAACCTATTTGTGCAGAGTGTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACTTTGTTGGTTTCCTCTGTCAACCTATTTGTGCAGAGTGTTGAT  650

seq1  AACCGATGTGACACACAGCAAAGACTCTTTGTCTTGTTAGACACTTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGATGTGACACACAGCAAAGACTCTTTGTCTTGTTAGACACTTGCCA  700

seq1  -GGAGTGGAGATGAGCGGAGAAAGATGGGAGTTGAAAGGAAGGATGTTTA  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGAGATGAGCGGAGAAAGATGGGAGTTGAAAGGAAGGATGTTTA  750

seq1  GTTTGAACACATGCATGAGTGCCTGCCTTCCAGAGCCCATGTTAACATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACACATGCATGAGTGCCTGCCTTCCAGAGCCCATGTTAACATTC  800

seq1  GCTGACATCCTTTTCTCCCTGAGACAGGACCGTCTTCATTCTCCTTGCTC  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTGACATCCTTTTCTCCCTGAGACAGGACCGTCTTCA-TCTCCTTGCTC  849

seq1  CTTTTTA-TAGTCTCCAAACAAAGAGAACTGTATTCCAGGTGTGAACATA  898
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTTTATTAGTCTCCAAACAAAGAG-ACTGTATTCCAGGTGTGAACATA  898

seq1  TCAGGGAGGTTTCCTGTTTGAGATTCAGAAATTCATAGCCCCGAGGAAAT  948
      ||| ||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TCAAGGAGGTTCCCTGTTTGAGATTCAGAAATTCATAGCCCCGA-GAAAT  947

seq1  GAGTTAAAGAGAGGAGAGAGAGAGA-AAGAGAGAGAGGACAGAG  991
      |||||  |||||||| ||| ||| | | |||||||||||| |||
seq2  GAGTT-TAGAGAGGATAGA-AGATATATGAGAGAGAGGACTGAG  989

seq1: chr1_195537906_195538284
seq2: B6Ng01-014O01.g_60_438 (reverse)

seq1  AGGTTCTCACTGTCTGAATTCCAACAATAGAAAAACAAAACCCCAGGCGG  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGTTCTCACTGTCTGAATTCCAACATTAGAAAAACAAAACCCCAGGCGG  50

seq1  GAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTAGAGGTCCTG  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTAGAGGTCCTG  100

seq1  AGTTTAATTCCCAGAAACCACATGGTGGCTTACAGCCATTTGTAGTAGAG  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATTCCCAGAAACCACATGGTGGCTTACAGCCATTTGTAGTAGAG  150

seq1  TCTGATGCCCTCTTCTGGTGTGCCTGAAGAGTGACAGTGTACTCACATAC  200
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCTATTATGGTGTGCCTGAAGAGTGACAGTGTACTCACATAC  200

seq1  ATTAAATAAATAAATCTTTAAAAATAAAGAAAAAGGAAAAAGAAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAATAAATCTTTAAAAATAAAGAAAAAGGAAAAAGAAAAACAA  250

seq1  AACCTCAATTCTCATGGAGCTGATTCTCATGGAGCTAGAGAAGATGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAATTCTCATGGAGCTGATTCTCATGGAGCTAGAGAAGATGTCAG  300

seq1  GTATTGTGTAAATAAATAGGATGACTGTGAGTAACAGGCAGAAAATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTGTAAATAAATAGGATGACTGTGAGTAACAGGCAGAAAATACCA  350

seq1  GTGTGACCCAACAAAGAGGCCAGAATTCC  379
      |||||||||||||||||||||||||||||
seq2  GTGTGACCCAACAAAGAGGCCAGAATTCC  379