BAC Information

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BAC

Clone NameB6Ng01-014P05
Chromosome1 (Build37)
Map Location 130,032,490 - 130,124,004
singlet/doubletdoublet
Overlap geneR3hdm1, LOC100042111
Upstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, LOC667109
Downstream geneUbxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4, LOC100042732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014P05.bB6Ng01-014P05.g
ACCDH849351DH849352
length1,119734
definitionDH849351|Mus musculus domesticus DNA, BAC clone: B6Ng01-014P05, 5' end.DH849352|Mus musculus domesticus DNA, BAC clone: B6Ng01-014P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,032,490 - 130,033,623)(130,123,268 - 130,124,004)
sequence
gaattctggaagtttaccttgcttaccttaatgaagttctctcttcccag
atgacagtagatgatgtaaaattgatttagaacaaaaattattgtaccag
tatactctccttcaaattaatttacattgaaagttaaaatatagttagaa
atctgtttgaataggaaggagtttaagctggaggataaaataattggttg
aatgatctgatagaaatatgtttgtcctagagaaaccaccaaatgttttg
aaccttggtagaatcaagtgtgaaagaatttgtaatttcaagaggattag
cagtagtgcttgcagtgctggtagctgtgtgaatcttgtagtaattctga
aaaatcctaggatatacaacactaggctcaaaattttctgttacttctct
ttacagactttgtcctcttaggacccagtataattagctagtgctctctt
ctgagtgttatatacccaagcactttgaatactgttgggcagtaacatga
tttattaccaagcacagattactctgtgcacatagataatgtaagcttgc
tctctaccttcaaagcatgatatacaacaatgttttgaactgaatggtgc
tcactccttgcctgtatgtaccagagcagtagtacccctagagtatacta
tatttagctactgccttttaccttttgaaaagcaaatttgaatcttttat
ttttaattaaatatctaaaatagcacaatgttcataacagcttctttcca
ttgaagggctaagccatagcttgcctgaactcctggtgcgacttctccat
cctctctcctgtggtggaaaccctgttttgtttgctccctttgttgcatt
aacccttctgtttctagtcttttcggttgtccaatcctcatttatgactt
tccatgctcatctgctctttctttctttggatagactctctttattcttg
actctttttcattcagtaatcataaagcagcttgtactcatcttacccag
gaagctgtgtacattttataaatgtctagatatctagtagctattggaaa
aagatgaaatttgactcttgtctagcctcttgtacagaataaaaagattg
ctatctatggtaagtattc
gaattccagaacatacacaaacccacagaacctaaacccactagtgaatg
aaaactgggttagagaagaaatcaagaaggcgactaaaactttcaagaat
tgaatgaaaataaaatcaacacatcaaaatttgcagggcataataaaaac
agttctaagagaaaaatttaaagtacctttaacaagaaggcttgaaaaaa
ttaaaaacacaggcaaaaacagtagtgggttaaagagctggctcagcagg
taagaacactactgctcctacataggatctgggcctggaatatacccaac
aatcataattgtagtatgtgatgagatgtgaagaggggagtgacagggat
atggaagcagggttggagggaggtaactgacaaaaaggagagaaaaccag
caacaccaaaaccagtggtcaggcaacacagggcaaccacagaagattcc
agagggctcctggtgaagatccagtaatgatggcctggcagaaggcagag
gcctggaaccagactcactgcagtgaacatttgcaagtaaagaagggtgg
ggaaaaaagggtatactgtgggacacactgccatacactacagcttctat
agtgagattttttttttccttttggaggggagcttacaagggcagacggc
aggcaggaagggatgaggaaataagtggaattgggtgcatgatatgaaat
tcacagcgaagcatttaaagctaaacaataaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_130032490_130033623
seq2: B6Ng01-014P05.b_44_1162

seq1  GAATTCTGGAAGTTTACCTTGCTTACCTTAATGAAGTTCTCTCTTCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAAGTTTACCTTGCTTACCTTAATGAAGTTCTCTCTTCCCAG  50

seq1  ATGACAGTAGATGATGTAAAATTGATTTAGAACAAAAATTATTGTACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTAGATGATGTAAAATTGATTTAGAACAAAAATTATTGTACCAG  100

seq1  TATACTCTCCTTCAAATTAATTTACATTGAAAGTTAAAATATAGTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTCCTTCAAATTAATTTACATTGAAAGTTAAAATATAGTTAGAA  150

seq1  ATCTGTTTGAATAGGAAGGAGTTTAAGCTGGAGGATAAAATAATTGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTGAATAGGAAGGAGTTTAAGCTGGAGGATAAAATAATTGGTTG  200

seq1  AATGATCTGATAGAAATATGTTTGTCCTAGAGAAACCACCAAATGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTGATAGAAATATGTTTGTCCTAGAGAAACCACCAAATGTTTTG  250

seq1  AACCTTGGTAGAATCAAGTGTGAAAGAATTTGTAATTTCAAGAGGATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGTAGAATCAAGTGTGAAAGAATTTGTAATTTCAAGAGGATTAG  300

seq1  CAGTAGTGCTTGCAGTGCTGGTAGCTGTGTGAATCTTGTAGTAATTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGCTTGCAGTGCTGGTAGCTGTGTGAATCTTGTAGTAATTCTGA  350

seq1  AAAATCCTAGGATATACAACACTAGGCTCAAAATTTTCTGTTACTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTAGGATATACAACACTAGGCTCAAAATTTTCTGTTACTTCTCT  400

seq1  TTACAGACTTTGTCCTCTTAGGACCCAGTATAATTAGCTAGTGCTCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACTTTGTCCTCTTAGGACCCAGTATAATTAGCTAGTGCTCTCTT  450

seq1  CTGAGTGTTATATACCCAAGCACTTTGAATACTGTTGGGCAGTAACATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTATATACCCAAGCACTTTGAATACTGTTGGGCAGTAACATGA  500

seq1  TTTATTACCAAGCACAGATTACTCTGTGCACATAGATAATGTAAGCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACCAAGCACAGATTACTCTGTGCACATAGATAATGTAAGCTTGC  550

seq1  TCTCTACCTTCAAAGCATGATATACAACAATGTTTTGAACTGAATGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCTTCAAAGCATGATATACAACAATGTTTTGAACTGAATGGTGC  600

seq1  TCACTCCTTGCCTGTATGTACCAGAGCAGTAGTACCCCTAGAGTATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTTGCCTGTATGTACCAGAGCAGTAGTACCCCTAGAGTATACTA  650

seq1  TATTTAGCTACTGCCTTTTACCTTTTGAAAAGCAAATTTGAATCTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCTACTGCCTTTTACCTTTTGAAAAGCAAATTTGAATCTTTTAT  700

seq1  TTTTAATTAAATATCTAAAATAGCACAATGTTCATAACAGCTTCTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAAATATCTAAAATAGCACAATGTTCATAACAGCTTCTTTCCA  750

seq1  TTGAAGGGCTAAGCCATAGCTTGCCTGAACTCCTGGTGCGACTTCTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGCTAAGCCATAGCTTGCCTGAACTCCTGGTGCGACTTCTCCAT  800

seq1  CCTCTCTCCTGTGGTGGAAACCCTGTTTTGTTTGCTCCCTTTGTTGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCTGTGGTGGAAACCCTGTTTTGTTTGCTCCCTTTGTTGCATT  850

seq1  AA-CCTTCTGTTTCTAGTCTTTTCGGTTGTCCAATCCTCATTTATGACTT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCTGTTTCTAGTCTTTTCGGTTGTCCAATCCTCATTTATGACTT  900

seq1  TCCATGCTCATCTGCTCTTTCTTTCTTTGGAATAGACTCTCTTTATTCTT  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCATGCTCATCTGCTCTTTCTTTCTTTGG-ATAGACTCTCTTTATTCTT  949

seq1  GACTC-TTTTCATTCAGTAAATCATAAAGGCAGCTTGTACTCCATCTTAC  998
      ||||| |||||||||||| ||||||||| |||||||||||| ||||||||
seq2  GACTCTTTTTCATTCAGT-AATCATAAA-GCAGCTTGTACT-CATCTTAC  996

seq1  CCAGGAAAGCTGTGGTAACATTTTAATAAATGTTCTAGGATATCTAAGTA  1048
      ||||| ||||||||   ||||||| ||||||| |||| ||||||| ||||
seq2  CCAGG-AAGCTGTG--TACATTTT-ATAAATG-TCTA-GATATCT-AGTA  1039

seq1  GCTATTTGGGAAAAAGATGAAATTTGACTCTTGTCTAGCTCTTTGTACAA  1098
      ||||||  |||||||||||||||||||||||||||||||   |||||| |
seq2  GCTATT--GGAAAAAGATGAAATTTGACTCTTGTCTAGCCTCTTGTAC-A  1086

seq1  GAATAAATACAGAAATGGCTATCTAT-GTAAGTATTC  1134
      ||||||    | | || ||||||||| ||||||||||
seq2  GAATAA----AAAGATTGCTATCTATGGTAAGTATTC  1119

seq1: chr1_130123268_130124004
seq2: B6Ng01-014P05.g_67_800 (reverse)

seq1  TGTTTATTTGTTTAGCTTTTCATTGCTTCGCTGTGAATTTCATATCATGC  50
      |||||| ||||||||| ||| | |||||||||||||||||||||||||||
seq2  TGTTTA-TTGTTTAGC-TTTAAATGCTTCGCTGTGAATTTCATATCATGC  48

seq1  ACCCCAATTCCACTTATTTCCTCATCCCTTCCTGCCTGCCGTCTGCCCTT  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CCCAATTCCACTTATTTCCTCATCCCTTCCTGCCTGCCGTCTGCCCTT  97

seq1  GTAAGCTCCCCTCCAAAAGGAAAAAAAAAATCTCACTATAGAAGCTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCCCCTCCAAAAGGAAAAAAAAAATCTCACTATAGAAGCTGTAG  147

seq1  TGTATGGCAGTGTGTCCCACAGTATACCCTTTTTTCCCCACCCTTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCAGTGTGTCCCACAGTATACCCTTTTTTCCCCACCCTTCTTTA  197

seq1  CTTGCAAATGTTCACTGCAGTGAGTCTGGTTCCAGGCCTCTGCCTTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAATGTTCACTGCAGTGAGTCTGGTTCCAGGCCTCTGCCTTCTGC  247

seq1  CAGGCCATCATTACTGGATCTTCACCAGGAGCCCTCTGGAATCTTCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATCATTACTGGATCTTCACCAGGAGCCCTCTGGAATCTTCTGTG  297

seq1  GTTGCCCTGTGTTGCCTGACCACTGGTTTTGGTGTTGCTGGTTTTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTGTGTTGCCTGACCACTGGTTTTGGTGTTGCTGGTTTTCTCTC  347

seq1  CTTTTTGTCAGTTACCTCCCTCCAACCCTGCTTCCATATCCCTGTCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCAGTTACCTCCCTCCAACCCTGCTTCCATATCCCTGTCACTC  397

seq1  CCCTCTTCACATCTCATCACATACTACAATTATGATTGTTGGGTATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCACATCTCATCACATACTACAATTATGATTGTTGGGTATATTC  447

seq1  CAGGCCCAGATCCTATGTAGGAGCAGTAGTGTTCTTACCTGCTGAGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCAGATCCTATGTAGGAGCAGTAGTGTTCTTACCTGCTGAGCCAG  497

seq1  CTCTTTAACCCACTACTGTTTTTGCCTGTGTTTTTAATTTTTTCAAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAACCCACTACTGTTTTTGCCTGTGTTTTTAATTTTTTCAAGCCT  547

seq1  TCTTGTTAAAGGTACTTTAAATTTTTCTCTTAGAACTGTTTTTATTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAAAGGTACTTTAAATTTTTCTCTTAGAACTGTTTTTATTATGC  597

seq1  CCTGCAAATTTTGATGTGTTGATTTTATTTTCATTCAATTCTTGAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAATTTTGATGTGTTGATTTTATTTTCATTCAATTCTTGAAAGTT  647

seq1  TTAGTCGCCTTCTTGATTTCTTCTCTAACCCAGTTTTCATTCACTAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCGCCTTCTTGATTTCTTCTCTAACCCAGTTTTCATTCACTAGTGG  697

seq1  GTTTAGGTTCTGTGGGTTTGTGTATGTTCTGGAATTC  737
      |||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTTCTGTGGGTTTGTGTATGTTCTGGAATTC  734