BAC Information

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BAC

Clone NameB6Ng01-015I01
Chromosome1 (Build37)
Map Location 51,257,616 - 51,381,090
singlet/doubletdoublet
Overlap geneSdpr, LOC383504
Upstream geneLOC100041993, Tmeff2
Downstream geneObfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015I01.bB6Ng01-015I01.g
ACCDH849740DH849741
length643570
definitionDH849740|Mus musculus domesticus DNA, BAC clone: B6Ng01-015I01, 5' end.DH849741|Mus musculus domesticus DNA, BAC clone: B6Ng01-015I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,257,616 - 51,258,258)(51,380,522 - 51,381,090)
sequence
gaattcttgacccataaaaattacgatataatcaatattcgttgttttta
ccaaataggttttagaataatatactaaatgacaacagggaacttacaca
ggactggactctgacatttattgtagaggaatagaatcttaaggatgaat
tctctgcgtgggttctgagctctatgagtcttataagaaagctgggcggt
ggaaataatcaacacctacttggttccagacacatgctgactcattgaca
gcctgctctgtagcatagcagtagctgggtcatgcagctatctgactcct
aaccagctatataaattatataaagaaatcttttacatggatcatgccaa
tgaataaggttaaattccttcaatttcaaaaatttaagaaagatgttagt
gaaaaagttatgaaagaaagagagtcaagtgcaagaagtggatgaatgtc
tctaactctaccagaaatcaaatgaaggccaccaatttccttcctacagt
ctgctgttcttatatgacacagtcttcaaagaaatccaatccattaagct
taagctagctctcctcttgttgaacaatcatgtggaagaaggtagtgtca
catagtgaaaaatatagttttcaaaggaaacagcaggccacta
gaattcagtgagacaagatcattatcaactagagatcaagcagaatatag
tatgccatactttgaattgttgacgtctgttctattgaccattagtaagc
ctttgaaagagaaaagccctgtcagttgtataatatgctctgtgcagcct
ttacccagctgctgatgaagaaaaggctggcagataatcaaagtcacaag
gctggaaatttaaactctgactgattcctactcctttaccccaattttgt
tagttgcttaaaacttgactctatttatagtagtcttcccaaaagcttgg
cttttcaagttacaatgatgctctgacacaataggagtaattattatggc
cttcatatctgatagtcatctgggtgacacaggaaacgattttcacttgg
gatgaaaccgaccatccaagtctgaaataatatctattttctggactctc
tgtaattagaaacgtgattgtataaatgtctgaaaatctgttctgtttta
aagaaattggcccggagcctgttttatttcggaacaaaataaacaaaaag
gtgaaggttttccttgttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51257616_51258258
seq2: B6Ng01-015I01.b_33_675

seq1  GAATTCTTGACCCATAAAAATTACGATATAATCAATATTCGTTGTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACCCATAAAAATTACGATATAATCAATATTCGTTGTTTTTA  50

seq1  CCAAATAGGTTTTAGAATAATATACTAAATGACAACAGGGAACTTACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGGTTTTAGAATAATATACTAAATGACAACAGGGAACTTACACA  100

seq1  GGACTGGACTCTGACATTTATTGTAGAGGAATAGAATCTTAAGGATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGACTCTGACATTTATTGTAGAGGAATAGAATCTTAAGGATGAAT  150

seq1  TCTCTGCGTGGGTTCTGAGCTCTATGAGTCTTATAAGAAAGCTGGGCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCGTGGGTTCTGAGCTCTATGAGTCTTATAAGAAAGCTGGGCGGT  200

seq1  GGAAATAATCAACACCTACTTGGTTCCAGACACATGCTGACTCATTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATCAACACCTACTTGGTTCCAGACACATGCTGACTCATTGACA  250

seq1  GCCTGCTCTGTAGCATAGCAGTAGCTGGGTCATGCAGCTATCTGACTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCTGTAGCATAGCAGTAGCTGGGTCATGCAGCTATCTGACTCCT  300

seq1  AACCAGCTATATAAATTATATAAAGAAATCTTTTACATGGATCATGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTATATAAATTATATAAAGAAATCTTTTACATGGATCATGCCAA  350

seq1  TGAATAAGGTTAAATTCCTTCAATTTCAAAAATTTAAGAAAGATGTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGGTTAAATTCCTTCAATTTCAAAAATTTAAGAAAGATGTTAGT  400

seq1  GAAAAAGTTATGAAAGAAAGAGAGTCAAGTGCAAGAAGTGGATGAATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTTATGAAAGAAAGAGAGTCAAGTGCAAGAAGTGGATGAATGTC  450

seq1  TCTAACTCTACCAGAAATCAAATGAAGGCCACCAATTTCCTTCCTACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCTACCAGAAATCAAATGAAGGCCACCAATTTCCTTCCTACAGT  500

seq1  CTGCTGTTCTTATATGACACAGTCTTCAAAGAAATCCAATCCATTAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTCTTATATGACACAGTCTTCAAAGAAATCCAATCCATTAAGCT  550

seq1  TAAGCTAGCTCTCCTCTTGTTGAACAATCAGGTGGAAGAAGGTAGTGTCA  600
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAGCTAGCTCTCCTCTTGTTGAACAATCATGTGGAAGAAGGTAGTGTCA  600

seq1  CATAGTGAAAAATATAGTTTTCAAAGGAAACAGCAGGCCACTA  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAAAAATATAGTTTTCAAAGGAAACAGCAGGCCACTA  643

seq1: chr1_51380522_51381090
seq2: B6Ng01-015I01.g_67_636 (reverse)

seq1  AGAACAAGG-AAACCTTCA-CATTCTGCTAATTTTGTGTCCTGAGTAGAA  48
      ||||||||| ||||||||| | || || | ||||||| |||  | || ||
seq2  AGAACAAGGAAAACCTTCACCTTTTTGTTTATTTTGT-TCCGAAATAAAA  49

seq1  CAGGCTCCGGGCCAATTTCTTTAAAACAGAACAGATTTTCAGACATTTAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCGGGCCAATTTCTTTAAAACAGAACAGATTTTCAGACATTTAT  99

seq1  ACAATCACGTTTCTAATTACAGAGAGTCCAGAAAATAGATATTATTTCAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACGTTTCTAATTACAGAGAGTCCAGAAAATAGATATTATTTCAG  149

seq1  ACTTGGATGGTCGGTTTCATCCCAAGTGAAAATCGTTTCCTGTGTCACCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGATGGTCGGTTTCATCCCAAGTGAAAATCGTTTCCTGTGTCACCC  199

seq1  AGATGACTATCAGATATGAAGGCCATAATAATTACTCCTATTGTGTCAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTATCAGATATGAAGGCCATAATAATTACTCCTATTGTGTCAGA  249

seq1  GCATCATTGTAACTTGAAAAGCCAAGCTTTTGGGAAGACTACTATAAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATTGTAACTTGAAAAGCCAAGCTTTTGGGAAGACTACTATAAATA  299

seq1  GAGTCAAGTTTTAAGCAACTAACAAAATTGGGGTAAAGGAGTAGGAATCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGTTTTAAGCAACTAACAAAATTGGGGTAAAGGAGTAGGAATCA  349

seq1  GTCAGAGTTTAAATTTCCAGCCTTGTGACTTTGATTATCTGCCAGCCTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTTTAAATTTCCAGCCTTGTGACTTTGATTATCTGCCAGCCTTT  399

seq1  TCTTCATCAGCAGCTGGGTAAAGGCTGCACAGAGCATATTATACAACTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCAGCAGCTGGGTAAAGGCTGCACAGAGCATATTATACAACTGA  449

seq1  CAGGGCTTTTCTCTTTCAAAGGCTTACTAATGGTCAATAGAACAGACGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTTTCTCTTTCAAAGGCTTACTAATGGTCAATAGAACAGACGTC  499

seq1  AACAATTCAAAGTATGGCATACTATATTCTGCTTGATCTCTAGTTGATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCAAAGTATGGCATACTATATTCTGCTTGATCTCTAGTTGATAA  549

seq1  TGATCTTGTCTCACTGAATTC  569
      |||||||||||||||||||||
seq2  TGATCTTGTCTCACTGAATTC  570