BAC Information

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BAC

Clone NameB6Ng01-015I04
Chromosome1 (Build37)
Map Location 4,187,930 - 4,317,563
singlet/doubletdoublet
Overlap geneLOC619785
Upstream geneXkr4, LOC100038975, LOC664792
Downstream geneRp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015I04.bB6Ng01-015I04.g
ACCDH849746DH849747
length252821
definitionDH849746|Mus musculus domesticus DNA, BAC clone: B6Ng01-015I04, 5' end.DH849747|Mus musculus domesticus DNA, BAC clone: B6Ng01-015I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,187,930 - 4,188,181)(4,316,744 - 4,317,563)
sequence
ctataaagcctactcactgctctgtattccacgcaatagcctaacatcac
aatatgaatcaaatgacttattcaagatgttttctttaccgattctaaat
gagagctacttgagtaatctgctgctttgcctttctcaaaagaagaaaca
gcctaaagcatcattcaaagagaacttcactatatcttactaggatatga
aaaccaatgaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtg
tg
gaattcagtgtagtctctcacccctaatgtagagatcagcaggccttaaa
gcatttgtgacaattacactaaagatgggtagtgatctagggagggaaga
gtctggaataataattctggggaattagggtgaggtctgtttccacagat
agcaaaaaggccaccaggtcatttacaacttctgctctcagctttccaga
tggaatgcaagtgctttacattatctcttccattgaggagacactcctct
gtgttctggatggcatgcaggtatttgattttatctcttccacagagaga
ctcccctgtgtgatcagcttttcttttctcttggtgctcttagtcagtaa
agggccccatggcctctacagccttagggcacttataggaggattgcagt
tgcttttggtatcctgtttgttgaagctgagagatatagggtggatttgt
gtaagtgtcagcacttactcactgggccaaagttaccttatatgaccaat
gagaaatgaatgtttatcaggccagcttggaggaaccacagcaagattga
ggctgtgacaagttaattgcaagcaaccaggctttttaatccctttaaaa
gaaaacaaaatataatggctgttgccaggatccgtacaatggtagtttcc
aggatacaatgatgcttacaagctatagaaggtacacaagattatatctg
agaccaattgtcctgccaaagcttttgtatgcttcactgacttctaaaga
acacagatacagaagtagactgagttcttcactgcctgagggagtgcttc
agttactcaggaacgaaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_4187930_4188181
seq2: B6Ng01-015I04.b_53_304

seq1  CTATAAAGCCTACTCACTGCTCTGTATTCCACGCAATAGCCTAACATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGCCTACTCACTGCTCTGTATTCCACGCAATAGCCTAACATCAC  50

seq1  AATATGAATCAAATGACTTATTCAAGATGTTTTCTTTACCGATTCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAATCAAATGACTTATTCAAGATGTTTTCTTTACCGATTCTAAAT  100

seq1  GAGAGCTACTTGAGTAATCTGCTGCTTTGCCTTTCTCAAAAGAAGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTACTTGAGTAATCTGCTGCTTTGCCTTTCTCAAAAGAAGAAACA  150

seq1  GCCTAAAGCATCATTCAAAGAGAACTTCACTATATCTTACTAGGATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGCATCATTCAAAGAGAACTTCACTATATCTTACTAGGATATGA  200

seq1  AAACCAATGAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATGAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTG  250

seq1  TG  252
      ||
seq2  TG  252

seq1: chr1_4316744_4317563
seq2: B6Ng01-015I04.g_69_889 (reverse)

seq1  GCTTTTCGTTCCTGAGTAACTGAAGCACTCCCTCAGGCAGTGAAGAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCGTTCCTGAGTAACTGAAGCACTCCCTCAGGCAGTGAAGAACTC  50

seq1  AGTCTACTTCTGTATCTGTGTTCTTTAGAAGTCAGTGAAGCATACAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACTTCTGTATCTGTGTTCTTTAGAAGTCAGTGAAGCATACAAAAG  100

seq1  C-TTGGCAGGACAATTGGTCTCAGATATTAATCTTGTGTACCTTCTATAG  149
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTGGCAGGACAATTGGTCTCAGATA-TAATCTTGTGTACCTTCTATAG  149

seq1  CTTGTAAGCATCATTGTATCCTGGAAACTACCATTGTACGGATCCTGGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGCATCATTGTATCCTGGAAACTACCATTGTACGGATCCTGGCA  199

seq1  ACAGCCATTATATTTTG-TTTCTTTTAAAGGGATTAAAAAGCCTGGTTGC  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAGCCATTATATTTTGTTTTCTTTTAAAGGGATTAAAAAGCCTGGTTGC  249

seq1  TTGCAATTAACTTGTCACAGCCTCAATCTTGCTGTGGTTCCTCCAAGCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTAACTTGTCACAGCCTCAATCTTGCTGTGGTTCCTCCAAGCTG  299

seq1  GCCTGATAAACATTCATTTCTCATTGGTCATATAAGGTAACTTTGGCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATAAACATTCATTTCTCATTGGTCATATAAGGTAACTTTGGCCCA  349

seq1  GTGAGTAAGTGCTGACACTTACACAAATCCACCCTATATCTCTCAGCTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAAGTGCTGACACTTACACAAATCCACCCTATATCTCTCAGCTTC  399

seq1  AACAAACAGGATACCAAAAGCAACTGCAATCCTCCTATAAGTGCCCTAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAGGATACCAAAAGCAACTGCAATCCTCCTATAAGTGCCCTAAG  449

seq1  GCTGTAGAGGCCATGGGGCCCTTTACTGACTAAGAGCACCAAGAGAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGAGGCCATGGGGCCCTTTACTGACTAAGAGCACCAAGAGAAAAG  499

seq1  AAAAGCTGATCACACAGGGGAGTCTCTCTGTGGAAGAGATAAAATCAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGATCACACAGGGGAGTCTCTCTGTGGAAGAGATAAAATCAAAT  549

seq1  ACCTGCATGCCATCCAGAACACAGAGGAGTGTCTCCTCAATGGAAGAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATGCCATCCAGAACACAGAGGAGTGTCTCCTCAATGGAAGAGAT  599

seq1  AATGTAAAGCACTTGCATTCCATCTGGAAAGCTGAGAGCAGAAGTTGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGCACTTGCATTCCATCTGGAAAGCTGAGAGCAGAAGTTGTAA  649

seq1  ATGACCTGGTGGCCTTTTTGCTATCTGTGGAAACAGACCTCACCCTAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGGTGGCCTTTTTGCTATCTGTGGAAACAGACCTCACCCTAATT  699

seq1  CCCCAGAATTATTATTCCAGACTCTTCCCTCCCTAGATCACTACCCATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAATTATTATTCCAGACTCTTCCCTCCCTAGATCACTACCCATCT  749

seq1  TTAGTGTAATTGTCACAAATGCTTTAAGGCCTGCTGATCTCTACATTAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTAATTGTCACAAATGCTTTAAGGCCTGCTGATCTCTACATTAGG  799

seq1  GGTGAGAGACTACACTGAATTC  820
      ||||||||||||||||||||||
seq2  GGTGAGAGACTACACTGAATTC  821