BAC Information

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BAC

Clone NameB6Ng01-015L24
Chromosome1 (Build37)
Map Location 179,766,851 - 179,880,321
singlet/doubletdoublet
Overlap geneEG631584
Upstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
Downstream geneEG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015L24.bB6Ng01-015L24.g
ACCDH849923DH849924
length1,011906
definitionDH849923|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L24, 5' end.DH849924|Mus musculus domesticus DNA, BAC clone: B6Ng01-015L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,766,851 - 179,767,693)(179,879,417 - 179,880,321)
sequence
gaattcacctgtttagcagtgttctcttgtacctagagggatttttatgt
ttcctctttaagggcttttacttgtttagccacattctcttgtaattcct
tgaggtatttttgtgcttcctcttgaagggcttctacctgtttagcagtg
ttctcctgtatttctttaaatgagttattaatgcccctcttaaaatcttc
taacaccatcatgagatatgattttaaatatacatcttgctttttggtgt
tttggggtatccaggactcgttgtggtgggcgtactgggttctgatgatg
tccagtgtttttggtttctgttagtaagtttcttacgtttgccttttcct
atctggaaatctctggtgttaatgttcaagctgtctctggttggagcttg
gtcctcctgtgatttttttagcctctgtcagcactcctgggattccaact
ctcacctgagttcattggtcagagcactctctgcaagcaagctctcctct
tttagggcaggtgtccagcagtctgaagctctgatcatccacctcctgag
ttcctggttcagaactctccctgttggccgactctcctctgggaaggaat
gtgcccaggggtctgggtctcagttttcttcctggccgaggatgaaggcc
caactggaccctgaccaagaagctctgttgcttctatcacccacatgctc
tcagtgatcaaggggtcctggagtgctaggggtcctcggccgtgttcacg
cagaagttggcggggctggccataacctgccctctggttgggcagggttc
atttgtccctgttcctgccagcacaagaccctcctctgtcttttgagctg
atgttgcattccactcacccatgatcccagtgatcccagtctgcgcatga
gagcactctggagtctagcgatcttcactgggctcagaagagatgccgag
tagcctacaagcatctctatctattttcaaagtctctgtctgtataatct
tcagtcatact
gaattcttgtttactgagttggttaacacatggagcaatgaacttgatta
aaataaaagcagacatttgcactatgcctgggaactgaatatctgcccat
caccacaaaagaaacctgttcatcaggactgatttcttggcactgtgtgc
attttcctagagaaacatggaaatatctttgttctttctaattttctcct
ttgttattttttaatacggtgaatgatattcaccaatggttgctcctctt
tctagcttccatttgatgctttcggtcatagtgttgggctccctggttat
tattatcttttccctctctcttcttttttttttttttattttaagccctc
actttgtcacctacctagtctccaagaaaacaaatctcccctagaatccg
gagctcactccatttctagccgaggagtgctctgtctaggattcttggtc
actttcagagactcaaatcccatcctgtatcaagaaaaaatcagccagcc
ctgcagtgcccacccactccctatctattccaacaccaacttcaagaacc
tgtagaaatgccacttttcctttcagacatttgtctctgacgacttagag
atccaagagctacttctcagaagcacagctggctcatgttgtctttcctt
ttcacatggtagaccgaggattgagggcctgaaatgttccttccagaatc
tttgctggtcataagctactttcatggtttccaaagtacaggaccaaggc
ccaagctaaacaatgtcacctatatttggggacttttagaaacgtgagtt
taggagctggtttgtaacccagatgcttacatagctcacacaatgccctg
gatttaatctctagtgctgggaaaagaagggaatggaaagggtggggagg
agagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_179766851_179767693
seq2: B6Ng01-015L24.b_235_1053

seq1  AAATCTTCTAACACCATCATGAGATATGATTTTAAATATACATCTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCTAACACCATCATGAGATATGATTTTAAATATACATCTTGCTT  50

seq1  TTTGGTGTTTTGGGGTATCCAGGACTCGTTGTGGTGGGCGTACTGGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTTTTGGGGTATCCAGGACTCGTTGTGGTGGGCGTACTGGGTTC  100

seq1  TGATGATGTCCAGTGTTTTTGGTTTCTGTTAGTAAGTTTCTTACGTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGTCCAGTGTTTTTGGTTTCTGTTAGTAAGTTTCTTACGTTTGC  150

seq1  CTTTTCCTATCTGGAAATCTCTGGTGTTAATGTTCAAGCTGTCTCTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTATCTGGAAATCTCTGGTGTTAATGTTCAAGCTGTCTCTGGTT  200

seq1  GGAGCTTGGTCCTCCTGTGATTTTTTTAGCCTCTGTCAGCACTCCTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGGTCCTCCTGTGATTTTTTTAGCCTCTGTCAGCACTCCTGGGA  250

seq1  TTCCAACTCTCACCTGAGTTCATTGGTCAGAGCACTCTCTGCAAGCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTCTCACCTGAGTTCATTGGTCAGAGCACTCTCTGCAAGCAAGC  300

seq1  TCTCCTCTTTTAGGGCAGGTGTCCAGCAGTCTGAAGCTCTGATCATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTTTAGGGCAGGTGTCCAGCAGTCTGAAGCTCTGATCATCCAC  350

seq1  CTCCTGAGTTCCTGGTTCAGAACTCTCCCTGTTGGCCGACTCTCCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGTTCCTGGTTCAGAACTCTCCCTGTTGGCCGACTCTCCTCTGG  400

seq1  GAAGGAATGTGCCCAGGGGTCTGGGTCTCAGTTTTCTTCCTGGCCGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGTGCCCAGGGGTCTGGGTCTCAGTTTTCTTCCTGGCCGAGGA  450

seq1  TGAAGGCCCAACTGGACCCTGACCAAGAAGCTCTGTTGCTTCTATCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCCAACTGGACCCTGACCAAGAAGCTCTGTTGCTTCTATCACCC  500

seq1  ACATGCTCTCAGGTGATCAGGGGGTCCTGGGAGTGCTAGGGGTCCTCGGC  550
      ||||||||||| ||||||| |||||||| |||||||||||||||||||||
seq2  ACATGCTCTCA-GTGATCAAGGGGTCCT-GGAGTGCTAGGGGTCCTCGGC  548

seq1  CGTGTTCACGCAGAAGTTGGCGGGGCTGGCCATAACCTGCCCTCTGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCACGCAGAAGTTGGCGGGGCTGGCCATAACCTGCCCTCTGGTTG  598

seq1  GGCAGGGTTCATTTGTCCCTGTTCCTGCCAGCACAAGACCCTCCTCTGTT  650
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCAGGGTTCATTTGTCCCTGTTCCTGCCAGCACAAGACCCTCCTCTG-T  647

seq1  CTTTTGAGCTGATGTTGCATTCCACTCACCCATGATCCCAAGGTGATCCC  700
      ||||||||||||||||||||||||||||||||||||||||  ||||| ||
seq2  CTTTTGAGCTGATGTTGCATTCCACTCACCCATGATCCCA--GTGAT-CC  694

seq1  CAGGTCCTGCGGCATGGAGAGCACTCTGGAGTCCTTAGCGATCTCCACTG  750
      |||   |||| |||| |||||||||||||||||  ||||||||| |||||
seq2  CAG--TCTGC-GCAT-GAGAGCACTCTGGAGTC--TAGCGATCTTCACTG  738

seq1  GGCTCAGAAGGAAGATGGCGGGAGTAGCCCCTACCAGAGCATCTCTCATC  800
      ||||||||||  ||||| |  ||||||  |||||   ||||||||| |||
seq2  GGCTCAGAAG--AGATGCC--GAGTAG--CCTAC--AAGCATCTCT-ATC  779

seq1  TATTTTCAAAGTCTCTGTCTTGTATAAATCTTCAGTCACTACT  843
      ||||||||||||||||||| ||||| |||||||||||| ||||
seq2  TATTTTCAAAGTCTCTGTC-TGTAT-AATCTTCAGTCA-TACT  819

seq1: chr1_179879417_179880321
seq2: B6Ng01-015L24.g_70_975 (reverse)

seq1  TCCTCTCCTCCCCA-CCTTTCCATTCCCTTCTTTTCCCAGCACTAGAGAT  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTCCCCACCCTTTCCATTCCCTTCTTTTCCCAGCACTAGAGAT  50

seq1  TAAATCCAGGGCATTGTGTGAGCTATGTAAGCATCTGGGTTACAAACCAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCAGGGCATTGTGTGAGCTATGTAAGCATCTGGGTTACAAACCAG  100

seq1  CTCCTAAACTCACGTTTCTAAAAGTCCCCAAATATAGGTGACATTGTTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAACTCACGTTTCTAAAAGTCCCCAAATATAGGTGACATTGTTTA  150

seq1  GCTTGGGCCTTGGTCCTGTACTTTGGAAACCATGAAAGTAGCTTATGACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCCTTGGTCCTGTACTTTGGAAACCATGAAAGTAGCTTATGACC  200

seq1  AGCAAAGATTCTGGAAGGAACATTTCAGGCCCTCAATCCTCGGTCTACCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGATTCTGGAAGGAACATTTCAGGCCCTCAATCCTCGGTCTACCA  250

seq1  TGTGAAAAGGAAAGACAACATGAGCCAGCTGTGCTTCTGAGAAGTAGCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGGAAAGACAACATGAGCCAGCTGTGCTTCTGAGAAGTAGCTC  300

seq1  TTGGATCTCTAAGTCGTCAGAGACAAATGTCTGAAAGGAAAAGTGGCATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTCTAAGTCGTCAGAGACAAATGTCTGAAAGGAAAAGTGGCATT  350

seq1  TCTACAGGTTCTTGAAGTTGGTGTTGGAATAGATAGGGAGTGGGTGGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGTTCTTGAAGTTGGTGTTGGAATAGATAGGGAGTGGGTGGGCA  400

seq1  CTGCAGGGCTGGCTGATTTTTTCTTGATACAGGATGGGATTTGAGTCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGCTGGCTGATTTTTTCTTGATACAGGATGGGATTTGAGTCTCT  450

seq1  GAAAGTGACCAAGAATCCTAGACAGAGCACTCCTCGGCTAGAAATGGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGACCAAGAATCCTAGACAGAGCACTCCTCGGCTAGAAATGGAGT  500

seq1  GAGCTCCGGATTCTAGGGGAGATTTGTTTTCTTGGAGACTAGGTAGGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGGATTCTAGGGGAGATTTGTTTTCTTGGAGACTAGGTAGGTGA  550

seq1  CAAAGTGAGGGCTTAAAATAAAAAAAAAAAAAAGAAGAGAGAGGGAAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAGGGCTTAAAATAAAAAAAAAAAAAAGAAGAGAGAGGGAAAAG  600

seq1  ATAATAATAACCAGGGAGCCCAACACTATGACCGAAAGCATCAAATGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAACCAGGGAGCCCAACACTATGACCGAAAGCATCAAATGGAA  650

seq1  GCTAGAAAGAGGAGCAACCATTGGTGAATATCATTCACCGTATTAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAGAGGAGCAACCATTGGTGAATATCATTCACCGTATTAAAAAA  700

seq1  TAACAAAGGAGAAAATTAGAAAGAACAAAGATATTTCCATGTTTCTCTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGGAGAAAATTAGAAAGAACAAAGATATTTCCATGTTTCTCTAG  750

seq1  GAAAATGCACACAGTGCCAAGAAATCAGTCCTGATGAACAGGTTTCTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCACACAGTGCCAAGAAATCAGTCCTGATGAACAGGTTTCTTTT  800

seq1  GTGGTGATGGGCAGATATTCAGTTCCCAGGCATAGTGCAAATGTCTGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATGGGCAGATATTCAGTTCCCAGGCATAGTGCAAATGTCTGCTT  850

seq1  TTATTTTAATCAAGTTCATTGCTCCATGTGTTAACCAACTCAGTAAACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAATCAAGTTCATTGCTCCATGTGTTAACCAACTCAGTAAACAA  900

seq1  GAATTC  905
      ||||||
seq2  GAATTC  906