BAC Information

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BAC

Clone NameB6Ng01-015O12
Chromosome1 (Build37)15 (Build37)
Map Location 39,924,429 - 39,924,46682,713,740 - 82,713,857
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065
Downstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015O12.bB6Ng01-015O12.g
ACCDH850036DH850037
length401665
definitionDH850036|Mus musculus domesticus DNA, BAC clone: B6Ng01-015O12, 5' end.DH850037|Mus musculus domesticus DNA, BAC clone: B6Ng01-015O12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,924,429 - 39,924,466)(82,713,740 - 82,713,857)
sequence
cttcctaaatgagatgtcttcatcaaaccactccactcaaggctataagg
aagaggaggcagaaagactataggaaccagaagtgatggaggattccaag
gatattgtgtcttacagacacaatgggattgatgtacacataaactcaaa
gaaactgtgacagtaggcataagaccttcactggtctaagccagatgaag
ttcaaacactaggaaggggaattagacactgggtccctcttctaaccatg
aaacttatttgaaattgatacctgccaaagaagagaaaattgattactgg
ctatatcaaccacactccatggcagggcccttgctcagaagttattggcc
aacaaagaaggaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
gaattcactctattttctttacaacatttgacattttccataatcaaggt
taatgaaatacatacaaccaaaagctctctgaaggggctggtgagaaggt
tcagtggttaagagcaccgggtgtgcttccaggtgctctgagttcaattc
ctagtaacaacaaggtggctcacaaccatctataaaaagggatgtgatgc
cctccttctggtatgcatgtgtacatacaaaagagagcatgaatctcttt
ttaaaaaactatatgaaaacaggtggtggtagggcacacctttaatccca
aaacttggaaggatatctcagttccaggccagcctggtctccagagtgag
ttccagccagggctgttacacagagaaaccctgtctccaaaaacccaaaa
caaaaacactgcagctatatgaagcaataaatacaagggagctggggaga
tgtctgagtcagtaaagtatgaggataggaattgggattcccagcaacct
tgtaattgctgggaaggcaaaaccaagaggattcctggcacctgccagcc
agctagtcgtgcaaaattagtcagctccacattcagtgacggacttgtct
cgaaaaataaagaagggccgggtgtggtggcccacgccttgaatcccagc
actggggaggcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39924429_39924466
seq2: B6Ng01-015O12.b_416_453 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACG  38
      ||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACG  38

seq1: chr15_82713740_82713857
seq2: B6Ng01-015O12.g_208_476 (reverse)

seq1  TTTGTTTTGGGTTTTTGTTTGTTTGTTTTTATTTTGGTTTTTCGAGACAG  50
                           |||||     ||| ||||||| |||||||
seq2  ---------------------TTTGT-----TTTGGGTTTTTGGAGACAG  24

seq1  GGTTTCTCTGTGT---AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  97
      |||||||||||||   ||||||||     ||||||||||||||| |||||
seq2  GGTTTCTCTGTGTAACAGCCCTGG-----CTGGAACTCACTCTGGAGACC  69

seq1  AGGCAGGCCTTGAACTCAGAG-----------------------------  118
      |||| ||||| |||||  |||                             
seq2  AGGCTGGCCTGGAACT--GAGATATCCTTCCAAGTTTTGGGATTAAAGGT  117

seq1  --------------------------------------------------  118
                                                        
seq2  GTGCCCTACCACCACCTGTTTTCATATAGTTTTTTAAAAAGAGATTCATG  167

seq1  --------------------------------------------------  118
                                                        
seq2  CTCTCTTTTGTATGTACACATGCATACCAGAAGGAGGGCATCACATCCCT  217

seq1  --------------------------------------------------  118
                                                        
seq2  TTTTATAGATGGTTGTGAGCCACCTTGTTGTTACTAGGAATTGAACTCAG  267

seq1  --  118
        
seq2  AG  269