BAC Information

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BAC

Clone NameB6Ng01-015P05
Chromosome1 (Build37)
Map Location 37,955,358 - 38,058,139
singlet/doubletdoublet
Overlap geneGm776, 2300002O18Rik, Txndc9, EG666434, Eif5b
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30
Downstream geneRev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015P05.bB6Ng01-015P05.g
ACCDH850068DH850069
length1,138959
definitionDH850068|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P05, 5' end.DH850069|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,056,970 - 38,058,139)(37,955,358 - 37,956,330)
sequence
gaattctaaaatacagataaaacaatctatctcagctactgatataataa
aacatattctaatcatgtaaaaatcggacaagtaaaattaattgaaaccc
aatactgaatggctaaaaagctaaaataaggattaagcataagaccgtag
acaagaataatcaagtaatttgagttctttgcaagagttaaagtgtctct
gcctcctccttatctaccaagcagctgcccatttctcacccccgtccacc
tgagcggaaggaagcatgctggcttgatagagcctggaagcctgaggggt
gatgacagaaaacgtctcaagtagggtctgtcgaagggaatgtccccaaa
tgagacctttttttgagactttcttcctagccttcatttctgtccattta
aaaaatattttctaaaatatcgtttaagataagagtatcactgggcggtg
gtggcgcacacctttaatcccagcacttgggaggcagaggcaggcagatt
tctgagttcgaggccagcctggtctacagagtgagttccaggacagccag
ggctatacagagaaaccctgtctcaaaaaacaaaacaaagagccgggcgt
ggtggcacacgcctttaatcccagcattcgggaggcagaggcaggcggat
ttctgagttcgaggccagccttttctacaaagtgagttccaggacagcca
gggctatacagagaaaccctgcctcgaaaaacccaaaaaaaaaaaaaaaa
aaaaaaaaaaagagtatcatttaaacacacacacacaaaacaaacaaacc
cagaaagctgtgtgtttgtttccccaaccctaacaccccatatgaggtac
cgaagttttttaaagccaggcaattttagtgatcagggcagagccccaga
ctgcttgatccacactggggaaaggcgcctgagcaaggatctggtagcac
tagaccatgcacataacctcacaggtgcactgcatcaaagtgagccaaag
gatgcacagaggctgtctcaatggttagtgtgtagtattacaagatggag
ctgatctcttctgttctaagatttccacagggaaatcttttaaacatctt
actaaactggcgacaaaaatagtatcttctcatagctt
gaattctatagatgtgagagactatgtagtagtcagtcttgtgttgctat
aaccaaatacccaaggcttggctaacttattgggcaaggaggtttatctt
ggttctaagctctgatgagcccaatcgaggtcagtaaatctcctgaggac
ctcctgtaggatcccctgtcatgtcacacatgataaggggacatgacagt
ttttatgacagtggtggaagaggtcacagacaagataggaagcaagaatc
aggtgcttaatcctggcacttgggaggcagaggcaagtggatagcttatg
agtgtaaggtcatggtctatatattgagttccaggccagccaagactgtg
gtgagaccctgtctcaaacccaagagaccagttctggcctcctataatgg
tccctttgctgcaaagagaggcatctttgatgttgagtgagagcttcact
tagctatggtaggatacatgctggaatgctgttagaaattaaatagatct
agtagtgtggtcacagaaggtcctctgtctcccatgacctcattagccat
agtagttggttagatttttagtaccaggcatgattccctccagtgtggtg
atcgactgactgtgggagttcagctccagacagtacatccatggtgcaac
tcccgctcatcatgtcgctgaacctcttagaagtgggggcaaaagccggg
cgtggtggtgcacgcctttaatcccagcactcgggaggcagaggcaggtg
gatttctgagttcgaggccagcctggtctacaaagtgagttccaggacag
ccagggctatacagagaaaccctgtctcgaaacccaaataaaaaaaaaaa
aggagttgggggcagaaaaattggagctggaggccagagtttgctgtgag
atttgtctcagagtgctagggaggctcacccacatactttcactattatg
gctatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38056970_38058139
seq2: B6Ng01-015P05.b_48_1185 (reverse)

seq1  AAGCTATTGGAAGGAAAGATACTAATTTTTGTCTGCAGTTTTAGTAAAGA  50
      |||||||     |  |||||||| |||||||||  ||| |||||| ||||
seq2  AAGCTAT-----GAGAAGATACT-ATTTTTGTCGCCAG-TTTAGT-AAGA  42

seq1  TTTGTTTATAAAAGATTTTCCCCTGTGGGAAATCTTTAGAACAGAAGAGA  100
        ||||  ||||||||||  |||||| ||||||| |||||||||||||||
seq2  --TGTT--TAAAAGATTT--CCCTGT-GGAAATC-TTAGAACAGAAGAGA  84

seq1  TCCAGCTCCACTCTTGGTATACTAACACACTAACCATTTGAGAACAGGCT  150
      | |||||||| |||||  ||||| |||||||||||| ||||| |||| ||
seq2  T-CAGCTCCA-TCTTGTAATACT-ACACACTAACCA-TTGAG-ACAGCCT  129

seq1  CTTGGTGCATCCCTTTGGCTCACTTTGATGGCAGTGCACCCTGTGAGGTT  200
      ||  |||||| |||||||||||||||||| |||||||| ||||||||| |
seq2  CT--GTGCAT-CCTTTGGCTCACTTTGAT-GCAGTGCA-CCTGTGAGG-T  173

seq1  TATGTTGCATGGTCTAGTGCTTACCAGATCCTTGCTCAGGCGCCTTTCCC  250
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATG-TGCATGGTCTAGTGC-TACCAGATCCTTGCTCAGGCGCCTTTCCC  221

seq1  CAGTGTGGATCAAGCAGTCTGGGGCTCTGCCCTGATCACTAAAATTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGATCAAGCAGTCTGGGGCTCTGCCCTGATCACTAAAATTGCCT  271

seq1  GGCTTTTAAAAAACTTCGGTACCTCATATGGGGTGTTAGGGTTGGGGAAA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGC-TTTAAAAAACTTCGGTACCTCATATGGGGTGTTAGGGTTGGGGAAA  320

seq1  CAAACACACAGCTTTCTGGGTTTGTTTGTTTTGTGTGTGTGTGTTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACAGCTTTCTGGGTTTGTTTGTTTTGTGTGTGTGTGTTTAAAT  370

seq1  GATACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGGC  450
      |||||||  ||||||||||||||||||||||||||| |||||||||||||
seq2  GATACTC--TTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTCGAGGC  418

seq1  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAAAA  468

seq1  GGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAATGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAATGCTGG  518

seq1  GATTAAAGGCGTGTGCCACCACGCCCGGCTCTTTGTTTTGTTTTTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCGTGTGCCACCACGCCCGGCTCTTTGTTTTGTTTTTTGAGA  568

seq1  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  618

seq1  AGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTG  668

seq1  GGATTAAAGGTGTGCGCCACCACCGCCCAGTGATACTCTTATCTTAAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGTGTGCGCCACCACCGCCCAGTGATACTCTTATCTTAAACG  718

seq1  ATATTTTAGAAAATATTTTTTAAATGGACAGAAATGAAGGCTAGGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGAAAATATTTTTTAAATGGACAGAAATGAAGGCTAGGAAGAA  768

seq1  AGTCTCAAAAAAAGGTCTCATTTGGGGACATTCCCTTCGACAGACCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAAAAAAGGTCTCATTTGGGGACATTCCCTTCGACAGACCCTAC  818

seq1  TTGAGACGTTTTCTGTCATCACCCCTCAGGCTTCCAGGCTCTATCAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACGTTTTCTGTCATCACCCCTCAGGCTTCCAGGCTCTATCAAGCC  868

seq1  AGCATGCTTCCTTCCGCTCAGGTGGACGGGGGTGAGAAATGGGCAGCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTTCCTTCCGCTCAGGTGGACGGGGGTGAGAAATGGGCAGCTGC  918

seq1  TTGGTAGATAAGGAGGAGGCAGAGACACTTTAACTCTTGCAAAGAACTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGATAAGGAGGAGGCAGAGACACTTTAACTCTTGCAAAGAACTCA  968

seq1  AATTACTTGATTATTCTTGTCTACGGTCTTATGCTTAATCCTTATTTTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTGATTATTCTTGTCTACGGTCTTATGCTTAATCCTTATTTTAG  1018

seq1  CTTTTTAGCCATTCAGTATTGGGTTTCAATTAATTTTACTTGTCCGATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGCCATTCAGTATTGGGTTTCAATTAATTTTACTTGTCCGATTT  1068

seq1  TTACATGATTAGAATATGTTTTATTATATCAGTAGCTGAGATAGATTGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGATTAGAATATGTTTTATTATATCAGTAGCTGAGATAGATTGTT  1118

seq1  TTATCTGTATTTTAGAATTC  1170
      ||||||||||||||||||||
seq2  TTATCTGTATTTTAGAATTC  1138

seq1: chr1_37955358_37956330
seq2: B6Ng01-015P05.g_69_1027

seq1  GAATTCTATAGATGTGAGAGACTATGTAGTAGTCAGTCTTGTGTTGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGATGTGAGAGACTATGTAGTAGTCAGTCTTGTGTTGCTAT  50

seq1  AACCAAATACCCAAGGCTTGGCTAACTTATTGGGCAAGGAGGTTTATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATACCCAAGGCTTGGCTAACTTATTGGGCAAGGAGGTTTATCTT  100

seq1  GGTTCTAAGCTCTGATGAGCCCAATCGAGGTCAGTAAATCTCCTGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAAGCTCTGATGAGCCCAATCGAGGTCAGTAAATCTCCTGAGGAC  150

seq1  CTCCTGTAGGATCCCCTGTCATGTCACACATGATAAGGGGACATGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAGGATCCCCTGTCATGTCACACATGATAAGGGGACATGACAGT  200

seq1  TTTTATGACAGTGGTGGAAGAGGTCACAGACAAGATAGGAAGCAAGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGACAGTGGTGGAAGAGGTCACAGACAAGATAGGAAGCAAGAATC  250

seq1  AGGTGCTTAATCCTGGCACTTGGGAGGCAGAGGCAAGTGGATAGCTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTAATCCTGGCACTTGGGAGGCAGAGGCAAGTGGATAGCTTATG  300

seq1  AGTGTAAGGTCATGGTCTATATATTGAGTTCCAGGCCAGCCAAGACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGGTCATGGTCTATATATTGAGTTCCAGGCCAGCCAAGACTGTG  350

seq1  GTGAGACCCTGTCTCAAACCCAAGAGACCAGTTCTGGCCTCCTATAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACCCTGTCTCAAACCCAAGAGACCAGTTCTGGCCTCCTATAATGG  400

seq1  TCCCTTTGCTGCAAAGAGAGGCATCTTTGATGTTGAGTGAGAGCTTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGCTGCAAAGAGAGGCATCTTTGATGTTGAGTGAGAGCTTCACT  450

seq1  TAGCTATGGTAGGATACATGCTGGAATGCTGTTAGAAATTAAATAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGGTAGGATACATGCTGGAATGCTGTTAGAAATTAAATAGATCT  500

seq1  AGTAGTGTGGTCACAGAAGGTCCTCTGTCTCCCATGACCTCATTAGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGTGGTCACAGAAGGTCCTCTGTCTCCCATGACCTCATTAGCCAT  550

seq1  AGTAGTTGGTTAGATTTTTAGTACCAGGCATGATTCCCTCCAGTGTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTGGTTAGATTTTTAGTACCAGGCATGATTCCCTCCAGTGTGGTG  600

seq1  ATCGACTGACTGTGGGAGTTCAGCTCCAGACAGTACATCCATGGTGCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACTGACTGTGGGAGTTCAGCTCCAGACAGTACATCCATGGTGCAAC  650

seq1  TCCCGCTCATCATGTCGCTGAACCTCTTAGAAGTGGGGGCAAAAGCCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCTCATCATGTCGCTGAACCTCTTAGAAGTGGGGGCAAAAGCCGGG  700

seq1  CGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTG  750

seq1  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  800

seq1  CCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAA  850
      ||||||||||||||||||||||||||||||||  |      ||| |||||
seq2  CCAGGGCTATACAGAGAAACCCTGTCTCGAAACCC------AAATAAAAA  844

seq1  AAAAAAAGGAAGTGGGGGCAGAAAAATTGGAGCTGGAAGGCCAAGAAGTT  900
      ||||||||||  |||||||||||||||||||||||| ||||||   ||||
seq2  AAAAAAAGGAGTTGGGGGCAGAAAAATTGGAGCTGG-AGGCCA--GAGTT  891

seq1  TGCTGTGAGATTTTGTCTCAGAAGTGCTAGGGAGGCTACACCCACAATAC  950
      |||||||||| |||||||||| ||||||||||||||| ||||||| ||||
seq2  TGCTGTGAGA-TTTGTCTCAG-AGTGCTAGGGAGGCT-CACCCAC-ATAC  937

seq1  TTCAACTATATATGGCTATCTAA  973
      ||  ||||| |||||||||||||
seq2  TTTCACTAT-TATGGCTATCTAA  959