BAC Information

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BAC

Clone NameB6Ng01-015P20
Chromosome1 (Build37)
Map Location 174,434,599 - 174,624,533
singlet/doubletdoublet
Overlap geneTagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320
Upstream geneRefbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9
Downstream geneCrp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015P20.bB6Ng01-015P20.g
ACCDH850098DH850099
length1,0701,026
definitionDH850098|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P20, 5' end.DH850099|Mus musculus domesticus DNA, BAC clone: B6Ng01-015P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,434,599 - 174,435,678)(174,624,001 - 174,624,533)
sequence
gaattcattttgtctgctaggcttttcttaggaagtcccccttgcccgct
gagacgcgggcctacctttcccagcaagcccacccagactgcctttgtcc
ctctgcttctattaattcctgtaagatgatctgaactgtgcagcttaata
ttcgttgtgtacagttcccactgccagcgctcctccctgtattcccttga
taacactatagatagtgtagagccggagacttcactctcttctacagatg
ctccgttacaacctaagggttgacggagggtagtttactcgctcccgctc
ttggcataggtttcccatatgctctgtactctcatttcctgaatcatttt
taaggcttcaaagaggagggttgggggctagacctcgcctctgtcaagct
tcatcactccaaatgagaagctgaactaaaatcctttacctcatcctgca
ttccagtgggtcccaggcgtcattctagacacaggaccattcattcagac
gaaatgtagtatctgtgtggcttcctactggccagagtccagagccctgc
tgcgctagctcctggccacgagtccctcccctgtcttcatagggacccta
tgcattggattgtagaatgttgagcgtgggcctggttatgtcctctccac
agctctttgccatcaccacagctgctcagaatggccaacaggggaccttc
ctacggcctgagccgagaggtgcagcagaagattgagaagcagtacgacg
cggatctggagcagatcctcatccagtggatcaccactcagtgccgtgag
gacgtgggccagccccagcctggccgtgagaactccagaagtggctcaag
gacggcacggtgagtgctggatgggtgagcgggcaagcagggcgagcagg
gctgatgctggggaccaggagcgttttacacagtgagaggagaagcgagc
atgcaaccaagctgccagcctgagcattcttcttgggggccttagagctt
ccatgcatttctgttctccacggaggaaaggacaggcgatgttcctgttg
caacaggacctgataggtgc
gaattctttgttcagttctgagccccattttttaataaggttatttgatt
ttatgaagtccaccttctttagtactttgtatatattggatattagtccc
ctatccgatttgggataggtaaagattctttcccaatctgttggtggtct
ttttgtcttactgacggtttcttttgccttacagaagctttgcaatttta
tgaggtcccatttattgattctcgatcttacagcacaagccattgctgtt
ctattcaggaattttcccctgtacccatatcttcaaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagatagaaatggatcaattagca
atcttctgcatgataacagccagtagtgccagcaccatttgttgaaaatg
ctgtcttttttccatatcacaaatataatcagaaacagaacaatggatgc
atacatgcttgttcttagctcaccttctccactctcgtgcagttttgtat
cccctgcctagggaactgtgccacttgcagtgggcaatcttcccacctca
gttgcagtcaaactcccatagaccagactgatctagacagtcctttactg
acactctcttcccaggggattctagattgtattaagttgaaaattaaaat
taaccatcatagagactaagagaaaaatatggacatagctaccaacctcc
aaactttattttctactaccatacacaaacttcaaaatcatgtttgaacc
ccctctaaccacagtagtacatttttagtaaataaatatatttataatcc
aaaaattgtattgctctggccagtcaaaattctatagattataaacagtt
tcaattgttttttttcacccccattaaccctaattaagtcatgaaataaa
aggatctactttcaaattttccccctcctagccaccatttagaaattatc
agctttacccagaaaaatattcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174434599_174435678
seq2: B6Ng01-015P20.b_47_1116

seq1  GAATTCATTTTGTCTGCTAGGCTTTTCTCAGGAAGTCCCCCTTGCCCGCT  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCATTTTGTCTGCTAGGCTTTTCTTAGGAAGTCCCCCTTGCCCGCT  50

seq1  GAGACGCGGGCCTACCTTTCCCAGCAAGCCCACCCAGACTGCCTTTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGCGGGCCTACCTTTCCCAGCAAGCCCACCCAGACTGCCTTTGTCC  100

seq1  CTCTGCTTCTATTAATTCCTGTAAGATGATCTGAACTGTGCAGCTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCTATTAATTCCTGTAAGATGATCTGAACTGTGCAGCTTAATA  150

seq1  TTCGTTGTGTACAGTTCCCACTGCCAGCGCTCCTCCCTGTATTCCCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGTGTACAGTTCCCACTGCCAGCGCTCCTCCCTGTATTCCCTTGA  200

seq1  TAACACTATAGATAGTGTAGAGCCGGAGACTTCACTCTCTTCTACAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTATAGATAGTGTAGAGCCGGAGACTTCACTCTCTTCTACAGATG  250

seq1  CTCCGTTACAACCTAAGGGTTGACGGAGGGTAGTTTACTCGCTCCCGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTACAACCTAAGGGTTGACGGAGGGTAGTTTACTCGCTCCCGCTC  300

seq1  TTGGCATAGGTTTCCCATATGCTCTGTACTCTCATTTCCTGAATCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATAGGTTTCCCATATGCTCTGTACTCTCATTTCCTGAATCATTTT  350

seq1  TAAGGCTTCAAAGAGGAGGGTTGGGGGCTAGACCTCGCCTCTGTCAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTTCAAAGAGGAGGGTTGGGGGCTAGACCTCGCCTCTGTCAAGCT  400

seq1  TCATCACTCCAAATGAGAAGCTGAACTAAAATCCTTTACCTCATCCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTCCAAATGAGAAGCTGAACTAAAATCCTTTACCTCATCCTGCA  450

seq1  TTCCAGTGGGTCCCAGGCGTCATTCTAGACACAGGACCATTCATTCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGGGTCCCAGGCGTCATTCTAGACACAGGACCATTCATTCAGAC  500

seq1  GAAATGTAGTATCTGTGTGGCTTCCTACTGGCCAGAGTCCAGAGCCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGTATCTGTGTGGCTTCCTACTGGCCAGAGTCCAGAGCCCTGC  550

seq1  TGCGCTAGCTCCTGGCCACGAGTCCCTCCCCTGTCTTCATAGGGACCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTAGCTCCTGGCCACGAGTCCCTCCCCTGTCTTCATAGGGACCCTA  600

seq1  TGCATTGGATTGTAGAATGTTGAGCGTGGGCCTGGTTATGTCCTCTCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGGATTGTAGAATGTTGAGCGTGGGCCTGGTTATGTCCTCTCCAC  650

seq1  AGCTCTTTGCCATCACCACAGCTGCTCAGAATGGCCAACAGGGGACCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGCCATCACCACAGCTGCTCAGAATGGCCAACAGGGGACCTTC  700

seq1  CTACGGCCTGAGCCGAGAGGTGCAGCAGAAGATTGAGAAGCAGTACGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGCCTGAGCCGAGAGGTGCAGCAGAAGATTGAGAAGCAGTACGACG  750

seq1  CGGATCTGGAGCAGATCCTCATCCAGTGGATCACCACTCAGTGCCGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCTGGAGCAGATCCTCATCCAGTGGATCACCACTCAGTGCCGTGAG  800

seq1  GACGTGGGCCAGCCCCAGCCTGGCCGTGAGAACTTCCAGAAGTGGCTCAA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACGTGGGCCAGCCCCAGCCTGGCCGTGAGAAC-TCCAGAAGTGGCTCAA  849

seq1  GGACGGCACGGTGAGTGCTGGATGGGTGAGCGGGGCAAGCAGGGCGAGCA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGACGGCACGGTGAGTGCTGGATGGGTGAGC-GGGCAAGCAGGGCGAGCA  898

seq1  GGGCTGATGCTGGGGGACCAGGGAGCGTTTTACACAGTGAAGAGGAGAAA  950
      ||||||||||| |||||||| |||||||||||||||||| ||||||| ||
seq2  GGGCTGATGCT-GGGGACCA-GGAGCGTTTTACACAGTG-AGAGGAG-AA  944

seq1  GCGAGCATGCAAACCCAAGCTTGCCAGCCTGAGCA-TCTTCCTGGGGGCC  999
      ||||||||||||  |||||| |||||||||||||| ||||| |||||| |
seq2  GCGAGCATGCAA--CCAAGC-TGCCAGCCTGAGCATTCTTCTTGGGGG-C  990

seq1  CTTAGAGCTTCCATGCTTTTCTG-TCTCCACGGAGGAAAGGACAAGGCGG  1048
      |||||||||||||||| |||||| ||||||||||||||||||| |||| |
seq2  CTTAGAGCTTCCATGCATTTCTGTTCTCCACGGAGGAAAGGAC-AGGC-G  1038

seq1  ATGTGCCTGTTGCAGCAGGAGCTGATAGGTGC  1080
      |||| ||||||||| ||||| |||||||||||
seq2  ATGTTCCTGTTGCAACAGGACCTGATAGGTGC  1070

seq1: chr1_174624001_174624533
seq2: B6Ng01-015P20.g_548_1096 (reverse)

seq1  ATGTG-ATATTTTTTCTGGTTAAGCTGATAA-TTCT-AATGGTGGCTAGG  47
      ||||| ||||||||   ||| |||||||||| |||| |||||||||||||
seq2  ATGTGAATATTTTTCTGGGTAAAGCTGATAATTTCTAAATGGTGGCTAGG  50

seq1  AAGTGGGAAATATG-AAGTAGATCCTTT--ATTCATGACTTAATTA-GGT  93
      | | || |||| || |||||||||||||   ||||||||||||||| |||
seq2  AGGGGGAAAATTTGAAAGTAGATCCTTTTATTTCATGACTTAATTAGGGT  100

seq1  TAAT-GGGGTG-AATAAAACAAT--GAACTG-TTATAATCTATAGAATTT  138
      |||| |||||| || ||||||||   ||||| ||||||||||||||||||
seq2  TAATGGGGGTGAAAAAAAACAATTGAAACTGTTTATAATCTATAGAATTT  150

seq1  TGACTGG-CAGAGCAATACAA-TTTTGGATTATAAATATATTTATTTACT  186
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TGACTGGCCAGAGCAATACAATTTTTGGATTATAAATATATTTATTTACT  200

seq1  AAAAATGTACTACTGTGGTTAGA-GGGGTTCAAACATGATTTTGAAGTTT  235
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAAATGTACTACTGTGGTTAGAGGGGGTTCAAACATGATTTTGAAGTTT  250

seq1  GTGTATGGTAGTAGAAAATAAAGTTTGGAGGTTGGTAGCTATGT-CATAT  284
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGTATGGTAGTAGAAAATAAAGTTTGGAGGTTGGTAGCTATGTCCATAT  300

seq1  TTTTCTCTTAGTCTCTATGATGGTTAATTTTAATTTTCAACTTAATACAA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTAGTCTCTATGATGGTTAATTTTAATTTTCAACTTAATACAA  350

seq1  TCTAGAATCCCCTGGGAAGAGAGTGTCAGTAAAGGACTGTCTAGATCAGT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCCCCTGGGAAGAGAGTGTCAGTAAAGGACTGTCTAGATCAGT  400

seq1  CTGGTCTATGGGAGTTTGACTGCAACTGAGGTGGGAAGATTGCCCACTGC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTATGGGAGTTTGACTGCAACTGAGGTGGGAAGATTGCCCACTGC  450

seq1  AAGTGGCACAGTTCCCTAGGCAGGGGATACAAAACTGCACGAGAGTGGAG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCACAGTTCCCTAGGCAGGGGATACAAAACTGCACGAGAGTGGAG  500

seq1  AAGGTGAGCTAAGAACAAGCATGTATGCATCCATTGTTCTGTTTCTGAT  533
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGCTAAGAACAAGCATGTATGCATCCATTGTTCTGTTTCTGAT  549