BAC Information

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BAC

Clone NameB6Ng01-016B02
Chromosome1 (Build37)
Map Location 45,300,019 - 45,374,050
singlet/doubletdoublet
Overlap geneCol3a1
Upstream geneLOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640
Downstream geneCol5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016B02.bB6Ng01-016B02.g
ACCDH850152DH850153
length1,0931,006
definitionDH850152|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B02, 5' end.DH850153|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,300,019 - 45,301,137)(45,373,033 - 45,374,050)
sequence
gaattccagtctaagccaccattaatgaatattatactagtcataacatc
tttgaatttagttatttaaaatttaatgaggtctatgagcagagtttttc
tgttttattttcaatttataaataataattatatggctattattttcttt
tttatcaggtattttcttcatttacatttccaatgctatccaaaaagtcc
tccataccctccccctccactcacctaccaacccactcccactttttggc
cctggcgttcccctatactgaggcgtataaagtttgcaagaccaatgggc
ctctctttccaatgatggctgactaggccatcttctgatacatatgcagc
tagagacacaagctctggggatactggttagttcatattgttgttccacc
tatagggttgcagacccctttagctccttgcatactttctctagctcctc
cattgagggccctgtgatccatccaatagctgaaaataatcatgttattt
taattttccattgaaataataaagacatcagataaatatttttcttatag
tgaatagatattattacaccgttgactcttaagatagttcaatcattcta
atggtcccacaaggaaatctaagctacatataattatgattaaaagccaa
aatatcctcgtgtatcctttttacaacagagaaagtcacaaactcaaaac
acaaaagaaatctttacagtgcccttgttggtttagaaatgtcaaatatt
tagccaataactaccatgacctgtagaacctgaacttgacagtggaaaat
gaaggtctactgccttacgaaacaaggatgagcttagcttggttggacat
atttcaaccaacaccccagaataaaatttgactttagctttactgcacta
tgataaaatttgagggtaaaatcaagatttttgattgactaaactttttc
tattaagatatatttaagttttgcttgctacatagaattgaaactataaa
caaacttgacccattttcttttagtaaacagtagtttagtgatattacat
gaaaatgctataaatgattaatatattttcatgtagagactag
gaattcagatttgaatctagtatgcttttctaaaatctgatactcctaac
tccattatgtttttactgctttcaaggatactatagaatgaaagagacct
gtttcagtgccctgtcccagatggtttgtgaactctgtaccctctcgagt
atgcagacagatttttttttttttaaggaataacagtgatctccaaaatg
tcttttttttctctaatcttaaaatgggaagataccatctggagtggaat
cctactgtttatttctcttgaccttatgaaaaaggcttgtatttccaagg
ccaccctgatgggatccagaccaccagcaagatgaatgtgtgacttggaa
gccaggcactaagactgacaaaaacaaacataaacattcttcatcagata
catagatgtatttaggatggctaaggcactactattcaaaaactatagtt
tttgcttgatttgcatttgttaacttctaacttgagcacaagtctccttt
gaatgctacttgggcactataaattctgtgcaacatcataaagtgtttct
gtgagaaacatagcttgttggcctctacaataacaaacataagaacaaaa
aatgtctcacaactatgttaactgagaaagtcatccttcaatgctaatta
tcaaagctaatttaactattaataagttttggattagttgtggcaatttc
ttctttggggcaattttagtatttcttccatttgaactttccgttttgtt
cattgagattacatttgaaatggcagggcttgacctcagccatggaaaaa
gcaaggctttgattagttaatctgaaaggaatccacttgggctatgtttt
tgttaggcacagacagaacttctagtggttaatgtaactctccaaagtgc
agctaacaaacgactgctgtgcagagctagctcagagtttcactgctttc
ctgacagcaaagttcctcttaactttggataaaaaaaaaacatgtgattt
tttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45300019_45301137
seq2: B6Ng01-016B02.b_28_1120

seq1  GAATTCCAGTCTAAGCCACCATTAATGAATATTATACTAGTCATAACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCTAAGCCACCATTAATGAATATTATACTAGTCATAACATC  50

seq1  TTTGAATTTAGTTATTTAAAATTTAATGAGGTCTATGAGCAGAGTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTAGTTATTTAAAATTTAATGAGGTCTATGAGCAGAGTTTTTC  100

seq1  TGTTTTATTTTCAATTTATAAATAATAATTATATGGCTATTATTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTTCAATTTATAAATAATAATTATATGGCTATTATTTTCTTT  150

seq1  TTTATCAGGTATTTTCTTCATTTACATTTCCAATGCTATCCAAAAAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGGTATTTTCTTCATTTACATTTCCAATGCTATCCAAAAAGTCC  200

seq1  TCCATACCCTCCCCCTCCACTCACCTACCAACCCACTCCCACTTTTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACCCTCCCCCTCCACTCACCTACCAACCCACTCCCACTTTTTGGC  250

seq1  CCTGGCGTTCCCCTATACTGAGGCGTATAAAGTTTGCAAGACCAATGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCGTTCCCCTATACTGAGGCGTATAAAGTTTGCAAGACCAATGGGC  300

seq1  CTCTCTTTCCAATGATGGCTGACTAGGCCATCTTCTGATACATATGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCCAATGATGGCTGACTAGGCCATCTTCTGATACATATGCAGC  350

seq1  TAGAGACACAAGCTCTGGGGATACTGGTTAGTTCATATTGTTGTTCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACACAAGCTCTGGGGATACTGGTTAGTTCATATTGTTGTTCCACC  400

seq1  TATAGGGTTGCAGACCCCTTTAGCTCCTTGCATACTTTCTCTAGCTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGTTGCAGACCCCTTTAGCTCCTTGCATACTTTCTCTAGCTCCTC  450

seq1  CATTGAGGGCCCTGTGATCCATCCAATAGCTGAAAATAATCATGTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGGGCCCTGTGATCCATCCAATAGCTGAAAATAATCATGTTATTT  500

seq1  TAATTTTCCATTGAAATAATAAAGACATCAGATAAATATTTTTCTTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCATTGAAATAATAAAGACATCAGATAAATATTTTTCTTATAG  550

seq1  TGAATAGATATTATTACACCGTTGACTCTTAAGATAGTTCAATCATTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGATATTATTACACCGTTGACTCTTAAGATAGTTCAATCATTCTA  600

seq1  ATGGTCCCACAAGGAAATCTAAGCTACATATAATTATGATTAAAAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCACAAGGAAATCTAAGCTACATATAATTATGATTAAAAGCCAA  650

seq1  AATATCCTCGTGTATCCTTTTTACAACAGAGAAAGTCACAAACTCAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTCGTGTATCCTTTTTACAACAGAGAAAGTCACAAACTCAAAAC  700

seq1  ACAAAAGAAATCTTTACAGTGCCCTTGTTGGTTTAGAAATGTCAAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAATCTTTACAGTGCCCTTGTTGGTTTAGAAATGTCAAATATT  750

seq1  TAGCCAATAACTACCATGACCTGTAGAACCTGAACTTGACAGTGGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATAACTACCATGACCTGTAGAACCTGAACTTGACAGTGGAAAAT  800

seq1  GAAGGTCTACTGCCTTACGAAACAAGGATGAGCTTAGCTTGGTTGGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTACTGCCTTACGAAACAAGGATGAGCTTAGCTTGGTTGGACAT  850

seq1  ATTTCAACCAACACCCCAGAATAAAATTTGACTTTAGCTTTACTGCACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACCAACACCCCAGAATAAAATTTGACTTTAGCTTTACTGCACTA  900

seq1  TGATAAAATTTGAGGGTAAAATCAAAGATTTTTGATTGACTAAACTTTTT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGATAAAATTTGAGGGTAAAATC-AAGATTTTTGATTGACTAAACTTTTT  949

seq1  CTTATTAAAGATATAATTTTAAGTTTTTGCTTGCTACAATAGAATTTGAA  1000
      | |||| ||||||||  |||||| ||||||||||||| ||||||||   |
seq2  C-TATT-AAGATATA--TTTAAG-TTTTGCTTGCTAC-ATAGAATT--GA  991

seq1  AACTAATAAAACCAAACTTGACCCCAATTTTCTTTTAGTAAAACCAGTAG  1050
      |||| |||||  ||||||||||||  ||||||||||||||||  ||||||
seq2  AACT-ATAAA--CAAACTTGACCC--ATTTTCTTTTAGTAAA--CAGTAG  1034

seq1  TTTAGGTGGATATTACATGAAAAATTGCTATTAAAAATGAATAAATATAT  1100
      |||||   |||||||||||||||  ||||||   ||||| || |||||||
seq2  TTTAG--TGATATTACATGAAAA--TGCTAT---AAATG-ATTAATATAT  1076

seq1  TTTCCATGTTAGAGACTAG  1119
      ||| |||| ||||||||||
seq2  TTT-CATG-TAGAGACTAG  1093

seq1: chr1_45373033_45374050
seq2: B6Ng01-016B02.g_67_1072 (reverse)

seq1  AAAAAAAAATCCACATTGTTTTTTTTTTTAATCCAAAAGTTTTAAAGGAG  50
      |||||||||| |||| ||||||||||||  |||| ||||||    | |||
seq2  AAAAAAAAAT-CACA-TGTTTTTTTTTT--ATCC-AAAGTT----AAGAG  41

seq1  GAAACTTTGCCTGTCAGGAAAGCAGTGGAAACTCTGAGCTAGCTCTGCAC  100
      | ||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  G-AACTTTG-CTGTCAGGAAAGCAGT-GAAACTCTGAGCTAGCTCTGCAC  88

seq1  AGCAGTCGTTTGTTAGCTGCACTTTGGAGAGTTACATTAACCACTAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCGTTTGTTAGCTGCACTTTGGAGAGTTACATTAACCACTAGAAG  138

seq1  TTCTGTCTGTGCCTAACAAAAACATAGCCCAAGTGGATTCCTTTCAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGTGCCTAACAAAAACATAGCCCAAGTGGATTCCTTTCAGATT  188

seq1  AACTAATCAAAGCCTTGCTTTTTCCATGGCTGAGGTCAAGCCCTGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATCAAAGCCTTGCTTTTTCCATGGCTGAGGTCAAGCCCTGCCATT  238

seq1  TCAAATGTAATCTCAATGAACAAAACGGAAAGTTCAAATGGAAGAAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTAATCTCAATGAACAAAACGGAAAGTTCAAATGGAAGAAATAC  288

seq1  TAAAATTGCCCCAAAGAAGAAATTGCCACAACTAATCCAAAACTTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGCCCCAAAGAAGAAATTGCCACAACTAATCCAAAACTTATTAA  338

seq1  TAGTTAAATTAGCTTTGATAATTAGCATTGAAGGATGACTTTCTCAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAATTAGCTTTGATAATTAGCATTGAAGGATGACTTTCTCAGTTA  388

seq1  ACATAGTTGTGAGACATTTTTTGTTCTTATGTTTGTTATTGTAGAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTGTGAGACATTTTTTGTTCTTATGTTTGTTATTGTAGAGGCCA  438

seq1  ACAAGCTATGTTTCTCACAGAAACACTTTATGATGTTGCACAGAATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTATGTTTCTCACAGAAACACTTTATGATGTTGCACAGAATTTAT  488

seq1  AGTGCCCAAGTAGCATTCAAAGGAGACTTGTGCTCAAGTTAGAAGTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCAAGTAGCATTCAAAGGAGACTTGTGCTCAAGTTAGAAGTTAAC  538

seq1  AAATGCAAATCAAGCAAAAACTATAGTTTTTGAATAGTAGTGCCTTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAATCAAGCAAAAACTATAGTTTTTGAATAGTAGTGCCTTAGCC  588

seq1  ATCCTAAATACATCTATGTATCTGATGAAGAATGTTTATGTTTGTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAATACATCTATGTATCTGATGAAGAATGTTTATGTTTGTTTTTG  638

seq1  TCAGTCTTAGTGCCTGGCTTCCAAGTCACACATTCATCTTGCTGGTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTAGTGCCTGGCTTCCAAGTCACACATTCATCTTGCTGGTGGTC  688

seq1  TGGATCCCATCAGGGTGGCCTTGGAAATACAAGCCTTTTTCATAAGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCATCAGGGTGGCCTTGGAAATACAAGCCTTTTTCATAAGGTCA  738

seq1  AGAGAAATAAACAGTAGGATTCCACTCCAGATGGTATCTTCCCATTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATAAACAGTAGGATTCCACTCCAGATGGTATCTTCCCATTTTAA  788

seq1  GATTAGAGAAAAAAAAGACATTTTGGAGATCACTGTTATTCCTTAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGAAAAAAAAGACATTTTGGAGATCACTGTTATTCCTTAAAAAA  838

seq1  AAAAAAATCTGTCTGCATACTCGAGAGGGTACAGAGTTCACAAACCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCTGTCTGCATACTCGAGAGGGTACAGAGTTCACAAACCATCT  888

seq1  GGGACAGGGCACTGAAACAGGTCTCTTTCATTCTATAGTATCCTTGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGGCACTGAAACAGGTCTCTTTCATTCTATAGTATCCTTGAAAG  938

seq1  CAGTAAAAACATAATGGAGTTAGGAGTATCAGATTTTAGAAAAGCATACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAACATAATGGAGTTAGGAGTATCAGATTTTAGAAAAGCATACT  988

seq1  AGATTCAAATCTGAATTC  1018
      ||||||||||||||||||
seq2  AGATTCAAATCTGAATTC  1006