BAC Information

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BAC

Clone NameB6Ng01-016C02
Chromosome1 (Build37)
Map Location 126,981,424 - 126,982,564
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666998
Downstream geneActr3, Slc35f5, Lypd1, E030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016C02.bB6Ng01-016C02.g
ACCDH850193DH850194
length1,1261,168
definitionDH850193|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C02, 5' end.DH850194|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctcttcatccttgacacttagcagtttcgatttattttaagct
ccttgttaagtcctaaactttccacgaagcctatccctcgttttccatga
gttggtcacaggcacctttctctctccaagggtggagacaaaagccactt
cttaaactagtaaggctaagagttaagtaagtgatgaacactagccaggt
gtctttcagtgaataccctgggccaccagccagttggcctgccccaagca
agaacattacccccggctggcttcgttccaagcattggaggcaactgtgc
tgtactgagacatggagatggaggggacaagttaggtttaatctcagtct
agtcagaatgatgataatggttagaggacagatttcccagagcaatgcct
acagtgttgcatggattgttattaaccaccatatatcagttcttctgaag
acccaaataagagtctaagtgtgagttaagcatggagaatctaatgtgct
ctaaacaaccctaacagctttggtgatgagaggtaagacatcctaatagc
attggtccttttcaaagatgactatgaaacaaaggtcttcatgaggattg
gtggcatcatatgggaacaccagtgtttttaagagttaaactgctgcttg
gcatgcccctactaaaattcacttcaaatatatgaatgaagaaacacttc
ctaacttccctccaagaaatactcccaggctttcctagacgaggaacaca
aagactagtaatttaggcagttattgaataggagaatcacatttgtgtct
cagacatgagctctgagaaggaaaggccatgagaagatgtgggagaatga
aaaacaatgataatcttgaccaagtctacactgtgttcctgtgggaacta
gtgttcatcaaagtgctgccgtgcacatagtaatagcagatgtcctctct
agaagctgcccacaggcacatagcagcaaagagattctcatctcttcaac
aaatctgaggataatttctttcttaagagaaagagactagacttcagatt
tgagaatttgtttgcacagttttgagttaatgcaaaataaactatagtcc
aatcattacacaaatgctgtcttctg
gaattctttgtttagctctgtaccccattttaaaatagggttatttggtt
ttctggcatccaacttcttgagttctctctatatattggatattagcccc
ctatctgatttaggataggtaaagatcttattccaatgtgttggtggcct
tttgtctaattgacagtgtcctttgccttacagaagctttgcaattttat
gaggtcccatttgtggattcttgatcttacagcacaagctattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggctcttccccact
ttctcctttataagtttcagtgtctctgaataccaggaattcttatggga
aacagcctcttttagagatggctgcataaaaaccccaaacaaagacagta
gaaatagacatacacatagagaggggacagtcttacaggtctctcccagc
tgtggacaaagatctaactagtggctatggagagagggagaattagcctc
tttcccctgattggttatcttcgaaagtgaggaaccagcctgcctctgtt
ttagaattgaaagctgtcttataataaagacaaactaggctcattccttt
tatatttaaacctgtgtttatcaaggtttaggctatgctggacctgcaac
cttagctacatgtggttctatactgcctgttccaggaaacagcaaccatg
tctgtcctaattcgagttttagttctattaagagacagtattaccacagc
aactcttataaatcaaagcactgaatttggggctagcttacagtttcaga
ggttttagtccatttatgatcataacaggaagcatggtgcggtgcaggta
gacatggttgctggagaaggagctgagagttctacatcttgattggaaag
ttggcaagggaaaaactgtgttccaacactggggtgtagcttgagcatag
aagacttcagatgtccttccctacagtgacacatttctgcaggaggcaca
tctaccccataaagccacacctctgattatgctgctcttatgggcaataa
cctatcaatcacaacatgtttgtccaaagttgttatgacaattgcacatt
acttttctagggtatatctccaccgtccttagacacctttgtatatgttc
gctctcgtgaacctgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_126981424_126982564
seq2: B6Ng01-016C02.b_41_1166

seq1  GAATTCCCTCTTCATCCTTGACACTTAGCAGTTTCGATTTATTTTAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTTCATCCTTGACACTTAGCAGTTTCGATTTATTTTAAGCT  50

seq1  CCTTGTTAAGTCCTAAACTTTCCACGAAGCCTATCCCTCGTTTTCCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTAAGTCCTAAACTTTCCACGAAGCCTATCCCTCGTTTTCCATGA  100

seq1  GTTGGTCACAGGCACCTTTCTCTCTCCAAGGGTGGAGACAAAAGCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCACAGGCACCTTTCTCTCTCCAAGGGTGGAGACAAAAGCCACTT  150

seq1  CTTAAACTAGTAAGGCTAAGAGTTAAGTAAGTGATGAACACTAGCCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTAGTAAGGCTAAGAGTTAAGTAAGTGATGAACACTAGCCAGGT  200

seq1  GTCTTTCAGTGAATACCCTGGGCCACCAGCCAGTTGGCCTGCCCCAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAGTGAATACCCTGGGCCACCAGCCAGTTGGCCTGCCCCAAGCA  250

seq1  AGAACATTACCCCCGGCTGGCTTCGTTCCAAGCATTGGAGGCAACTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTACCCCCGGCTGGCTTCGTTCCAAGCATTGGAGGCAACTGTGC  300

seq1  TGTACTGAGACATGGAGATGGAGGGGACAAGTTAGGTTTAATCTCAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGAGACATGGAGATGGAGGGGACAAGTTAGGTTTAATCTCAGTCT  350

seq1  AGTCAGAATGATGATAATGGTTAGAGGACAGATTTCCCAGAGCAATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAATGATGATAATGGTTAGAGGACAGATTTCCCAGAGCAATGCCT  400

seq1  ACAGTGTTGCATGGATTGTTATTAACCACCATATATCAGTTCTTCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGCATGGATTGTTATTAACCACCATATATCAGTTCTTCTGAAG  450

seq1  ACCCAAATAAGAGTCTAAGTGTGAGTTAAGCATGGAGAATCTAATGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATAAGAGTCTAAGTGTGAGTTAAGCATGGAGAATCTAATGTGCT  500

seq1  CTAAACAACCCTAACAGCTTTGGTGATGAGAGGTAAGACATCCTAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAACCCTAACAGCTTTGGTGATGAGAGGTAAGACATCCTAATAGC  550

seq1  ATTGGTCCTTTTCAAAGATGACTATGAAACAAAGGTCTTCATGAGGATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCCTTTTCAAAGATGACTATGAAACAAAGGTCTTCATGAGGATTG  600

seq1  GTGGCATCATATGGGAACACCAGTGTTTTTAAGAGTTAAACTGCTGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCATATGGGAACACCAGTGTTTTTAAGAGTTAAACTGCTGCTTG  650

seq1  GCATGCCCCTACTAAAATTCACTTCAAATATATGAATGAAGAAACACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCCTACTAAAATTCACTTCAAATATATGAATGAAGAAACACTTC  700

seq1  CTAACTTCCCTCCAAGAAATACTCCCAGGCTTTCCTAGACGAGGAACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTCCCTCCAAGAAATACTCCCAGGCTTTCCTAGACGAGGAACACA  750

seq1  AAGACTAGTAATTTAGGCAGTTATTGAATAGGAGAATCACATTTGTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAGTAATTTAGGCAGTTATTGAATAGGAGAATCACATTTGTGTCT  800

seq1  CAGACATGAGCTCTGAGAAGGAAAGGCCATGAGAAGATGTGGGAGAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGAGCTCTGAGAAGGAAAGGCCATGAGAAGATGTGGGAGAATGA  850

seq1  AAAACAATGATAATCTTGACCAAGTCTACACTGTGTTCCTGTGGGAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATGATAATCTTGACCAAGTCTACACTGTGTTCCTGTGGGAACTA  900

seq1  GTGTTCATCAAAGTGCTGCCGTGCACATAGTAATAGCAGATGTCCTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATCAAAGTGCTGCCGTGCACATAGTAATAGCAGATGTCCTCTCT  950

seq1  AGAAGCTGCCCACAGGCACATAGCAGCAAAAGAGATTCTCATCTCTTCAA  1000
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  AGAAGCTGCCCACAGGCACATAGCAGC-AAAGAGATTCTCATCTCTTC-A  998

seq1  ACAAATCTGAGGATAATTTCTTTCTTAAGAGAAAGAGACTAAGACCTCAG  1050
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  ACAAATCTGAGGATAATTTCTTTCTTAAGAGAAAGAGACT-AGACTTCAG  1047

seq1  ATTTGAGAAATTTGTTTGCACAGTTTTGGAGTTAAATTGCAAAAATAAAA  1100
      ||||||| ||||||||||||||||||| |||||||  |||||||   |||
seq2  ATTTGAG-AATTTGTTTGCACAGTTTT-GAGTTAA--TGCAAAA--TAAA  1091

seq1  CTATAGGGTTCAAAAATCAATTACACAAATGCTGTCTTCTG  1141
      ||||||   ||   |||| ||||||||||||||||||||||
seq2  CTATAG---TC--CAATC-ATTACACAAATGCTGTCTTCTG  1126