BAC Information

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BAC

Clone NameB6Ng01-016G14
Chromosome3 (Build37)1 (Build37)
Map Location 127,599,754 - 127,599,840196,645,157 - 196,646,228
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik
Downstream geneLOC100043382, EG668828, LOC100043393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016G14.bB6Ng01-016G14.g
ACCDH850380DH850381
length6041,074
definitionDH850380|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G14, 5' end.DH850381|Mus musculus domesticus DNA, BAC clone: B6Ng01-016G14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,599,754 - 127,599,840)(196,645,157 - 196,646,228)
sequence
gaattcccagagacaactgggaaagaatgatagaaacaactttgaaaaca
tcaatgaaatcatcaaagttactataaatatgcaggacagaaattgtgtt
agtaagatctctctctctctctctctctctctctcacacacacacacaca
cacatctgtagtgaggtttggtctaatgctgcttgtattatgacactgag
ggaccatgcccttagttggttttgattggtaaataaagttgccggcagcc
aatggctgggcagggaagagagacatggaacatttaggattccagggcaa
tggatcaaaggagagagaaggaaagttcccccgaagctgggagaaggtgg
aggagaggagaagctggcctgagaaggtgcagggcagagagcttagccac
cattaggagccagtgtggccccaagagggctgccagactggttctggggc
agcaaagatgaaatacagattttagtaatcttgggaatattggagggagg
tggattagccacgtagaggttaggaggtaaaccagccattgagctatttc
aggcacgtcaaaatataaaggctgagtgtgtgtgtgtgtgtatgtgtgtg
tgtg
gaattcttttcctggagctagttccttcaagtgtccagtttaatgactac
ataaattatatctgtcattttctgagtacttcacttacttttcaagtttg
taaatctgtgcaccaacaattctagatctctagaagatctaagagagaat
agctatctcaaagctattaaaatgcatcatggattttaaatgtaatgaaa
agcttgcctaaaattgcctccattcttttaatagatttggtaatttttta
agactgtaatattattttttaaaacactggaacctgtaagataattcatc
aagttaaaaaacaaaacaaaacaaccaaaaaaaaaaaaaaaccaaaaacc
aaaccaaaccacttgccacacaagcctcttttttctgatcttcgtgtgtg
acttggcacacatgtgtttatatacacatgtcatatacatacataccaac
aaaacaaaaataaataataataatttttttagagtaagacatagcttttt
attggtctaacctggtctaatccacatgcctagtgacagacttggccagt
tttctccatctgtctccagtcttccctttgttgagagctcctggtttgac
ccaggaaagaagattatcatgggcaaggatggcagacattcagttgggac
ctgaaggggttcagtgtgatagagatatgtggctgctgggcagagggagg
atagtgccctgcacagctcctgcttggacagaatgggaggggtcagaagg
gaagaactttcccagcagctcccactgtacccttcttgccatcagcatct
ctccctcagcttccttaacgtttcactccagttagacctttttctgctcc
atatctttaatttttttctgctattttctgtttgtctaacagttgggttg
ttaattacttccttggactgtagaaaaaaacattcttcttaacaccttca
tacgtagtctcatctaccagtgtcaataatctcatgtccataaattgtgc
atgcttttttcttttctgttagctggtcaatctgtatgtctgcaagtttc
accttctgttgagtatcatagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127599754_127599840
seq2: B6Ng01-016G14.b_156_650 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CACACACACACATACACACACACACACACTCAGCCTTTATATTTTGACGT  50

seq1  --------------------------------------------------  0
                                                        
seq2  GCCTGAAATAGCTCAATGGCTGGTTTACCTCCTAACCTCTACGTGGCTAA  100

seq1  --------------------------------------------------  0
                                                        
seq2  TCCACCTCCCTCCAATATTCCCAAGATTACTAAAATCTGTATTTCATCTT  150

seq1  --------------------------------------------------  0
                                                        
seq2  TGCTGCCCCAGAACCAGTCTGGCAGCCCTCTTGGGGCCACACTGGCTCCT  200

seq1  --------------------------------------------------  0
                                                        
seq2  AATGGTGGCTAAGCTCTCTGCCCTGCACCTTCTCAGGCCAGCTTCTCCTC  250

seq1  --------------------------------------------------  0
                                                        
seq2  TCCTCCACCTTCTCCCAGCTTCGGGGGAACTTTCCTTCTCTCTCCTTTGA  300

seq1  --------------------------------------------------  0
                                                        
seq2  TCCATTGCCCTGGAATCCTAAATGTTCCATGTCTCTCTTCCCTGCCCAGC  350

seq1  --------------------------------------------------  0
                                                        
seq2  CATTGGCTGCCGGCAACTTTATTTACCAATCAAAACCAACTAAGGGCATG  400

seq1  --CACACA----CACACATACA--CACACTTAGA--TGTTGTGTTTAGTG  40
        | | ||    || | |||||  ||   |||||       |   ||  |
seq2  GTCCCTCAGTGTCATA-ATACAAGCAGCATTAGACCAAACCTCACTACAG  449

seq1  TGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGA  87
        |||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGA  495

seq1: chr1_196645157_196646228
seq2: B6Ng01-016G14.g_67_1140

seq1  GAATTCTTTTCCTGGAGCTAGTTCCTTCAAGTGTCCAGTTTAATGACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTGGAGCTAGTTCCTTCAAGTGTCCAGTTTAATGACTAC  50

seq1  ATAAATTATATCTGTCATTTTCTGAGTACTTCACTTACTTTTCAAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATATCTGTCATTTTCTGAGTACTTCACTTACTTTTCAAGTTTG  100

seq1  TAAATCTGTGCACCAACAATTCTAGATCTCTAGAAGATCTAAGAGAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGTGCACCAACAATTCTAGATCTCTAGAAGATCTAAGAGAGAAT  150

seq1  AGCTATCTCAAAGCTATTAAAATGCATCATGGATTTTAAATGTAATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTCAAAGCTATTAAAATGCATCATGGATTTTAAATGTAATGAAA  200

seq1  AGCTTGCCTAAAATTGCCTCCATTCTTTTAATAGATTTGGTAATTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCTAAAATTGCCTCCATTCTTTTAATAGATTTGGTAATTTTTTA  250

seq1  AGACTGTAATATTATTTTTTAAAACACTGGAACCTGTAAGATAATTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTAATATTATTTTTTAAAACACTGGAACCTGTAAGATAATTCATC  300

seq1  AAGTTAAAAAACAAAACAAAACAACCAAAAAAAAAAAAAAACCAAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAAAACAAAACAAAACAACCAAAAAAAAAAAAAAACCAAAAACC  350

seq1  AAACCAAACCACTTGCCACACAAGCCTCTTTTTTCTGATCTTCGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCACTTGCCACACAAGCCTCTTTTTTCTGATCTTCGTGTGTG  400

seq1  ACTTGGCACACATGTGTTTATATACACATGTCATATACATACATACCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCACACATGTGTTTATATACACATGTCATATACATACATACCAAC  450

seq1  AAAACAAAAATAAATAATAATAATTTTTTTAGAGTAAGACATAGCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAATAAATAATAATAATTTTTTTAGAGTAAGACATAGCTTTTT  500

seq1  ATTGGTCTAACCTGGTCTAATCCACATGCCTAGTGACAGACTTGGCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTAACCTGGTCTAATCCACATGCCTAGTGACAGACTTGGCCAGT  550

seq1  TTTCTCCATCTGTCTCCAGTCTTCCCTTTGTTGAGAGCTCCTGGTTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCATCTGTCTCCAGTCTTCCCTTTGTTGAGAGCTCCTGGTTTGAC  600

seq1  CCAGGAAAGAAGATTATCATGGGCAAGGATGGCAGACATTCAGTTGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGAAGATTATCATGGGCAAGGATGGCAGACATTCAGTTGGGAC  650

seq1  CTGAAGGGGTTCAGTGTGATAGAGATATGTGGCTGCTGGGCAGAGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGGTTCAGTGTGATAGAGATATGTGGCTGCTGGGCAGAGGGAGG  700

seq1  ATAGTGCCCTGCACAGCTCCTGCTTGGACAGAATGGGAGGGGTCAGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCCCTGCACAGCTCCTGCTTGGACAGAATGGGAGGGGTCAGAAGG  750

seq1  GAAGAACTTTCCCAGCAGCTCCCACTGTACCCTTCTTGCCATCAGCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTTCCCAGCAGCTCCCACTGTACCCTTCTTGCCATCAGCATCT  800

seq1  CTCCCTCAGCTTCCTTAACGTTTCACTCCAGTTAGACCTTTTTCTGCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAGCTTCCTTAACGTTTCACTCCAGTTAGACCTTTTTCTGCTCC  850

seq1  ATATCTTTAATTTTTTTCTGCTATTTTCTGTTTGTCTAACAGTT-GGTTG  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATCTTTAATTTTTTTCTGCTATTTTCTGTTTGTCTAACAGTTGGGTTG  900

seq1  TTAATTACTTCCTTGGACTGTAG-AATAAACATTCTTCCT-ACACCTTCA  947
      ||||||||||||||||||||||| || ||||||||||| | |||||||||
seq2  TTAATTACTTCCTTGGACTGTAGAAAAAAACATTCTTCTTAACACCTTCA  950

seq1  TACGTTAGTCTCATCTACCAGTGTC-ATAATCTCCATGTCCATAAATTGT  996
      |||| |||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TACG-TAGTCTCATCTACCAGTGTCAATAATCT-CATGTCCATAAATTGT  998

seq1  GCATGCTTTTT--CTTTCTGTTTAGCTGTTCAATCTGTATGTCTGCAAGT  1044
      |||||||||||   |||||| ||||||| |||||||||||||||||||||
seq2  GCATGCTTTTTTCTTTTCTG-TTAGCTGGTCAATCTGTATGTCTGCAAGT  1047

seq1  TTCACCTTCTGTTGAGTATCAATAGCTT  1072
      |||||||||||||||||||| |||||||
seq2  TTCACCTTCTGTTGAGTATC-ATAGCTT  1074