BAC Information

Click to search

BAC

Clone NameB6Ng01-016K07
Chromosome1 (Build37)
Map Location 134,179,068 - 134,180,178
singlet/doubletsinglet
Overlap genenone
Upstream geneSrgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1
Downstream geneEG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K07.bB6Ng01-016K07.g
ACCDH850550DH850551
length1,10276
definitionDH850550|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K07, 5' end.DH850551|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagaagcagagaggactgcacggggaggacatgctgtcacaagc
tgtgttgatttcacaagcaatggacctcctgcgtagactcagttatcctc
agtgtttcttggggcttgaacactggcctgtcagctgcaggggaaatggc
tctgtaattgaattgcctgtattggcttagctctaacatcataagaacgg
agtacaagaccgtgacctgcaggctagttgccccttgtcccacaagactc
tccatcacccctgtatccacgaccactatccctttgtctcccagccttcc
tgctgagctatgctctggtccctgagcggagtggcatggtgactattgga
tgcaggctgtcactcttaatgaagcgttggtccacagaggcaatcgtcta
tcacagcagtcccaggatgatccgtgagctgcatgttagaaatgcctgac
agagatgggctacagctcaattaaagagaagcgtgtgcgtgcatgtgtga
gggatgtacatgcgcactcacacaccggaggctagagagtagagagtacg
aatcaagtaaatcaagtaaaaatgctcccggaggacgggccaggagctaa
cagcttgcctgaatggcagcggcctgggagaccattgaggttagactatt
tctaccaagtagctcccaaacctgggaagcttgtaggatattgttttctc
attctatggagcgatggatgtgaatttaataagccatgtatgaggataat
ttttaactcaatttgggactatccagtctaagaaaatagttcagggtgcc
agctcttttgctttatttggagttataagatttcatgagaggcgtggggg
atggaggtcaggggcagagtcctcaagtgttgcacacaaggccctacgct
gggcctttaggaaacccagaggaaaaaaggagggcataagaagtgatggt
gtttccagtgttggcattcccttcagactccacaggaagagaaggggatg
agtcgaaattgtgacattcacccctaagacactgtcgctgactctgagag
atgtgggcagtaactccagctccaagggatctgggactcccttgtggtcc
tc
taggccagccacggagtgagacatgctctctagaagaggaggaggaaaag
aaagggggagggggaggagatgctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134179068_134180178
seq2: B6Ng01-016K07.b_46_1147 (reverse)

seq1  GAGGA-CACAAGGGAGTCCCAGATCCTTTGGAGCTGGAGTTACCTGCCCA  49
      ||||| |||||||||||||||||||| ||||||||||||||| |||||||
seq2  GAGGACCACAAGGGAGTCCCAGATCCCTTGGAGCTGGAGTTA-CTGCCCA  49

seq1  CCATCTCTTCAGAGTCAAGCGACAGTTGTCTTAGGGGTTGGATGTCACAA  99
       |||||| |||||||| |||||||| ||||||||||| || |||||||||
seq2  -CATCTC-TCAGAGTC-AGCGACAG-TGTCTTAGGGG-TGAATGTCACAA  94

seq1  TTTCGGCTCATCCCCTTCTCTTCCCTGTTGGAGTCTTGAAGGGAATGCC-  148
      ||||| |||||||||||||||| |||| ||||||| ||||||||||||| 
seq2  TTTCGACTCATCCCCTTCTCTT-CCTG-TGGAGTC-TGAAGGGAATGCCA  141

seq1  ACACTGGAAACACCATCACCTTCTTATTGCCCTCCTTTTTTCCTCTGGGT  198
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  ACACTGGAAACACCATCA-CTTCTTA-TGCCCTCCTTTTTTCCTCTGGGT  189

seq1  TTCCTAAAGGCCCAGCGTAGGGCCTTGTGTGCAACACTTGAGGACTCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAAGGCCCAGCGTAGGGCCTTGTGTGCAACACTTGAGGACTCTGC  239

seq1  CCCTGACCTCCATCCCCCACGCCTCTCATGAAATCTTATAACTCCAAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACCTCCATCCCCCACGCCTCTCATGAAATCTTATAACTCCAAATA  289

seq1  AAGCAAAAGAGCTGGCACCCTGAACTATTTTCTTAGACTGGATAGTCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAGAGCTGGCACCCTGAACTATTTTCTTAGACTGGATAGTCCCA  339

seq1  AATTGAGTTAAAAATTATCCTCATACATGGCTTATTAAATTCACATCCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTTAAAAATTATCCTCATACATGGCTTATTAAATTCACATCCAT  389

seq1  CGCTCCATAGAATGAGAAAACAATATCCTACAAGCTTCCCAGGTTTGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCATAGAATGAGAAAACAATATCCTACAAGCTTCCCAGGTTTGGGA  439

seq1  GCTACTTGGTAGAAATAGTCTAACCTCAATGGTCTCCCAGGCCGCTGCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGGTAGAAATAGTCTAACCTCAATGGTCTCCCAGGCCGCTGCCA  489

seq1  TTCAGGCAAGCTGTTAGCTCCTGGCCCGTCCTCCGGGAGCATTTTTACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCAAGCTGTTAGCTCCTGGCCCGTCCTCCGGGAGCATTTTTACTT  539

seq1  GATTTACTTGATTCGTACTCTCTACTCTCTAGCCTCCGGTGTGTGAGTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTTGATTCGTACTCTCTACTCTCTAGCCTCCGGTGTGTGAGTGC  589

seq1  GCATGTACATCCCTCACACATGCACGCACACGCTTCTCTTTAATTGAGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACATCCCTCACACATGCACGCACACGCTTCTCTTTAATTGAGCT  639

seq1  GTAGCCCATCTCTGTCAGGCATTTCTAACATGCAGCTCACGGATCATCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCATCTCTGTCAGGCATTTCTAACATGCAGCTCACGGATCATCCT  689

seq1  GGGACTGCTGTGATAGACGATTGCCTCTGTGGACCAACGCTTCATTAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCTGTGATAGACGATTGCCTCTGTGGACCAACGCTTCATTAAGA  739

seq1  GTGACAGCCTGCATCCAATAGTCACCATGCCACTCCGCTCAGGGACCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCCTGCATCCAATAGTCACCATGCCACTCCGCTCAGGGACCAGA  789

seq1  GCATAGCTCAGCAGGAAGGCTGGGAGACAAAGGGATAGTGGTCGTGGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCTCAGCAGGAAGGCTGGGAGACAAAGGGATAGTGGTCGTGGATA  839

seq1  CAGGGGTGATGGAGAGTCTTGTGGGACAAGGGGCAACTAGCCTGCAGGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGATGGAGAGTCTTGTGGGACAAGGGGCAACTAGCCTGCAGGTC  889

seq1  ACGGTCTTGTACTCCGTTCTTATGATGTTAGAGCTAAGCCAATACAGGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCTTGTACTCCGTTCTTATGATGTTAGAGCTAAGCCAATACAGGCA  939

seq1  ATTCAATTACAGAGCCATTTCCCCTGCAGCTGACAGGCCAGTGTTCAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTACAGAGCCATTTCCCCTGCAGCTGACAGGCCAGTGTTCAAGC  989

seq1  CCCAAGAAACACTGAGGATAACTGAGTCTACGCAGGAGGTCCATTGCTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAACACTGAGGATAACTGAGTCTACGCAGGAGGTCCATTGCTTG  1039

seq1  TGAAATCAACACAGCTTGTGACAGCATGTCCTCCCCGTGCAGTCCTCTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAACACAGCTTGTGACAGCATGTCCTCCCCGTGCAGTCCTCTCT  1089

seq1  GCTTCTAGAATTC  1111
      |||||||||||||
seq2  GCTTCTAGAATTC  1102