BAC Information

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BAC

Clone NameB6Ng01-016M08
Chromosome1 (Build37)
Map Location 169,466,319 - 169,587,360
singlet/doubletdoublet
Overlap geneRxrg
Upstream geneEG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52
Downstream geneLmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016M08.bB6Ng01-016M08.g
ACCDH850638DH850639
length921167
definitionDH850638|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M08, 5' end.DH850639|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,466,319 - 169,467,234)(169,587,194 - 169,587,360)
sequence
gaattcacagagatctgcctgcttctgcctcccaagtgctgaaataagag
gcatgtgccatcacacctgagtatcttttatagatcagcatcttgggctt
tgttagaggaaatgttcatagttcaaactcttgtccacaacacatagata
gacaattatggagagcttgtgtccatgaggaggtttgatctccctactgt
gggatgtcatcagctctggatccgtagtatttgtagtagtattgttgtat
tttagaacagggataatgcaattcccaaaataaatgtaatattctcacat
gcccaggaaccaggtaacttcctgaaatgctgtgaattttagtcttggga
aatagcaaagcctcatgggagagtatgatggcctacaagtttgtccttat
aagcccctgtaacatgcggctcaaagccattccagctgggaaattctgga
ggaatggtcttggccaaagcccatctcttggttagtagttaatatttaat
aaatgtttgctttaaatttagcccaaaatggtggagttgttttttactct
tcttcttctttctgatatattgcaggattaataatgacttttagctagaa
ggcttctgggtagttgtgtccataccaagacagttgtcatctctctctct
ctctctctgtctctctctgtctctctctgtctgtctctctgtctctctct
gtctgagttgtgtgtgtgtgtgcatatgtgtgtgtgctgggatcaaaggg
tgtgcaccactatgcccagcagttggatatccttgctcgttattatgaca
gaagctgtcatcttgcaaataccatcccacaagcatgctccgaaaggtga
gaacagaatttactgaggtgaattgtgaggctggggacattactcaggac
ccccaggtatgacctttattt
agtgtgagccacagaccccttccaactacatgaattcaaaaccatataaa
aggctgggtggcagagtgagcagaagtgaatggactctagaagtacaact
tgccttcttctcaggccagccagccatcgatgctcttgtctcttcctcct
cctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169466319_169467234
seq2: B6Ng01-016M08.b_45_965

seq1  GAATTCACAGAGATCTGCCTGCTTCTGCCTCCCAAGTGCTGAAATAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGATCTGCCTGCTTCTGCCTCCCAAGTGCTGAAATAAGAG  50

seq1  GCATGTGCCATCACACCTGAGTATCTTTTATAGATCAGCATCTTGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCATCACACCTGAGTATCTTTTATAGATCAGCATCTTGGGCTT  100

seq1  TGTTAGAGGAAATGTTCATAGTTCAAACTCTTGTCCACAACACATAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGGAAATGTTCATAGTTCAAACTCTTGTCCACAACACATAGATA  150

seq1  GACAATTATGGAGAGCTTGTGTCCATGAGGAGGTTTGATCTCCCTACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTATGGAGAGCTTGTGTCCATGAGGAGGTTTGATCTCCCTACTGT  200

seq1  GGGATGTCATCAGCTCTGGATCCGTAGTATTTGTAGTAGTATTGTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTCATCAGCTCTGGATCCGTAGTATTTGTAGTAGTATTGTTGTAT  250

seq1  TTTAGAACAGGGATAATGCAATTCCCAAAATAAATGTAATATTCTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACAGGGATAATGCAATTCCCAAAATAAATGTAATATTCTCACAT  300

seq1  GCCCAGGAACCAGGTAACTTCCTGAAATGCTGTGAATTTTAGTCTTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGAACCAGGTAACTTCCTGAAATGCTGTGAATTTTAGTCTTGGGA  350

seq1  AATAGCAAAGCCTCATGGGAGAGTATGATGGCCTACAAGTTTGTCCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAAGCCTCATGGGAGAGTATGATGGCCTACAAGTTTGTCCTTAT  400

seq1  AAGCCCCTGTAACATGCGGCTCAAAGCCATTCCAGCTGGGAAATTCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTGTAACATGCGGCTCAAAGCCATTCCAGCTGGGAAATTCTGGA  450

seq1  GGAATGGTCTTGGCCAAAGCCCATCTCTTGGTTAGTAGTTAATATTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTCTTGGCCAAAGCCCATCTCTTGGTTAGTAGTTAATATTTAAT  500

seq1  AAATGTTTGCTTTAAATTTAGCCCAAAATGGTGGAGTTGTTTTTTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGCTTTAAATTTAGCCCAAAATGGTGGAGTTGTTTTTTACTCT  550

seq1  TCTTCTTCTTTCTGATATATTGCAGGATTAATAATGACTTTTAGCTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTTCTGATATATTGCAGGATTAATAATGACTTTTAGCTAGAA  600

seq1  GGCTTCTGGGTAGTTGTGTCCATACCAAGACAGTTGTCATCTCTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGGGTAGTTGTGTCCATACCAAGACAGTTGTCATCTCTCTCTCT  650

seq1  CTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTGTCTCTCTGTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTGTCTCTCTGTCTCTCTCT  700

seq1  GTCTGAGTTGTGTGTGTGTGTGCATATGTGTGTGTGCTGGGATCAAA-GG  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCTGAGTTGTGTGTGTGTGTGCATATGTGTGTGTGCTGGGATCAAAGGG  750

seq1  TGTGCACCACTATGCCCAGCAGTTGGATATCC-TGCTCGTTATTATGACA  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTGCACCACTATGCCCAGCAGTTGGATATCCTTGCTCGTTATTATGACA  800

seq1  GAAGCTGTCATCTTGCAAATACCAT-CCACAAGCATGCTCCG-AAGGTGA  846
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GAAGCTGTCATCTTGCAAATACCATCCCACAAGCATGCTCCGAAAGGTGA  850

seq1  GAACAGAATTTACTGAGGTG-AGTGTGAGGCTGGGGACATTACTCAGGAC  895
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  GAACAGAATTTACTGAGGTGAATTGTGAGGCTGGGGACATTACTCAGGAC  900

seq1  CCCCAGGTATGACCTTTATTT  916
      |||||||||||||||||||||
seq2  CCCCAGGTATGACCTTTATTT  921

seq1: chr1_169587194_169587360
seq2: B6Ng01-016M08.g_73_239 (reverse)

seq1  GGAGGAGGAGGAGGAGGAGGAGGAAGAGACAAGAGCATCGATGGCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAGGAGGAGGAAGAGACAAGAGCATCGATGGCTGGCT  50

seq1  GGCCTGAGAAGAAGGCAAGTTGTACTTCTAGAGTCCATTCACTTCTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGAAGAAGGCAAGTTGTACTTCTAGAGTCCATTCACTTCTGCTC  100

seq1  ACTCTGCCACCCAGCCTTTTATATGGTTTTGAATTCATGTAGTTGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCACCCAGCCTTTTATATGGTTTTGAATTCATGTAGTTGGAAGG  150

seq1  GGTCTGTGGCTCACACT  167
      |||||||||||||||||
seq2  GGTCTGTGGCTCACACT  167