BAC Information

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BAC

Clone NameB6Ng01-017D03
Chromosome1 (Build37)
Map Location 132,429,631 - 132,620,693
singlet/doubletdoublet
Overlap geneZp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2, Cd55
Downstream geneAA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017D03.bB6Ng01-017D03.g
ACCDH850946DH850947
length1,1251,152
definitionDH850946|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D03, 5' end.DH850947|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,429,631 - 132,430,692)(132,619,532 - 132,620,693)
sequence
gaattctatcagacctttaaagaagacctaataccaatattcttcacact
atcccacaaaatagaaacagaaggaacactacccaattcattctatgaag
tcacaattacacttatacctaaaccacaaaagaccaaacaaagaaagaga
acttcagaccaatctcccgtatgaacattgatgcaaaaatactcaataaa
actctagccaaccgaatttaagaacacatcaaaatgatcattcactacaa
tcaagtaggcttcatcacagggatgcagggatgtttcattacatggaagt
ccatcaatgtaatccactacacaaacaaactcaaggaaaaaaaaaatcac
atgatcaattcattagatgctgaaaacgcatttgacaaaattcagcatcc
cttcatgttaaaagtcttggaaaaatcaggaattcaaggcccagacctac
acatagttaccaggagggagggaaaccggcaaagggaataacatttgaat
tgtaaataaaggaaatatccaataaaaaataaaatataagtaaattataa
ataatttttaaagaaggaaaaaaagatactttctgctcttttcccccacc
aaacctaaagcttgacaagctctgctttatcgatatttagtaagcctagg
ccttccatactgactcatcctgaaaccacattctgtgtaaagtcaagatc
ccatctttaccttgaatggggcaagacagtacacaagttcccctatcttg
tattcttgctgaggccatttcctggtttaactggaatctgacctccttga
tagagaatcccatggaaaattacccaactctattctcagaaccaaaggta
agtatgtccaagttaactttcttagcctttattaaaactgcctgtttgtg
tggaacctcctccagctaattgtttatcttagctccagttaaaacttctt
gcttcaaacagcttactctgcaccttctgcagctacagagcagacaccaa
gacagggttctacatttaaaaccctggtgttctagaccacttaggctaca
cataagtctcagaatattttgggtgtggttcaggcagctggaataaagac
ttcaattggcctaatattgtatctg
gaattctttctgtttggcccccttttatacttttgaaattatgctctgag
ctctgtatttcaggctttattgatgattttcttatttaaggagctctgct
tccactgtgctagtacagccacaataagactatttttcattctgaacctt
tgacaaggcattcttaaagaaaacaaataatttggtacaaatgcatttcc
tgtggcaccttgaatggcacaaatgtgaacaggcaacccttgtcctttaa
gtaactgatgggttacactcaactaaacattctatatgcattctggagcc
aagccacatcagctcggtagaaatcctcagcctccttacctataactaaa
ccacgtcattcattcactatacttaaattactaattacaggttcatgtgt
ttcaaagcttgtgttcacggccgtatacatcttttcagtagtacccatcc
ttttcacttgaaaatgccatgggaaggctaacaccctgccttaaatcaaa
tgaatgtagacacaaacacttcataattcagtaaacataatactttgttt
tccaaataaaatagtcaaagcactgtaaacaaaatgttagctaatttttg
aagaaaaacaaaaaacaacaaaaacccaaacctttcccacaaccaaggca
gccttgtattcattgagttggatgtgctgcacattacaataggcactaag
aaaccatccggggtggaatgctgatcgctaagcacttacccttgcagcaa
aaagccctggttcgatgcttagcatgagtaacaaactagcttattcaaat
aaagtgttcctttagatttgcaaatactgcttgcatatcttactcaaaaa
tcaatttcttccaaaataagtttgcttaaaatgaatgaaaggttgatgaa
tcgactcttttagagatcacattacagaacaatcacattacagaagtatt
attccttacgtaaggacatagaccctggtcctacagtgagtgaaattaga
ctgtatcatagatacataaatactgatggcatagcgtatggagaagctgc
tggctagcagctggctggggttgattcatactggccctcgaggtcttcta
gaagctagtaaacttttattcctaatttaaagtgctgcatgagccgacgt
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132429631_132430692
seq2: B6Ng01-017D03.b_116_1173

seq1  CAGAAGGAACACTACCCAATTCATTCTATGAAGTCACAATTACACTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAACACTACCCAATTCATTCTATGAAGTCACAATTACACTTATA  50

seq1  CCTAAACCACAAAAGACCAAACAAAGAAAGAGAACTTCAGACCAATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCACAAAAGACCAAACAAAGAAAGAGAACTTCAGACCAATCTCC  100

seq1  CGTATGAACATTGATGCAAAAATACTCAATAAAACTCTAGCCAACCGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGAACATTGATGCAAAAATACTCAATAAAACTCTAGCCAACCGAAT  150

seq1  TTAAGAACACATCAAAATGATCATTCACTACAATCAAGTAGGCTTCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACACATCAAAATGATCATTCACTACAATCAAGTAGGCTTCATCA  200

seq1  CAGGGATGCAGGGATGTTTCATTACATGGAAGTCCATCAATGTAATCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGCAGGGATGTTTCATTACATGGAAGTCCATCAATGTAATCCAC  250

seq1  TACACAAACAAACTCAAGGAAAAAAAAAATCACATGATCAATTCATTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAACAAACTCAAGGAAAAAAAAAATCACATGATCAATTCATTAGA  300

seq1  TGCTGAAAACGCATTTGACAAAATTCAGCATCCCTTCATGTTAAAAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAACGCATTTGACAAAATTCAGCATCCCTTCATGTTAAAAGTCT  350

seq1  TGGAAAAATCAGGAATTCAAGGCCCAGACCTACACATAGTTACCAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATCAGGAATTCAAGGCCCAGACCTACACATAGTTACCAGGAGG  400

seq1  GAGGGAAACCGGCAAAGGGAATAACATTTGAATTGTAAATAAAGGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAACCGGCAAAGGGAATAACATTTGAATTGTAAATAAAGGAAATA  450

seq1  TCCAATAAAAAATAAAATATAAGTAAATTATAAATAATTTTTAAAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAAAAAATAAAATATAAGTAAATTATAAATAATTTTTAAAGAAGG  500

seq1  AAAAAAAGATACTTTCTGCTCTTTTCCCCCACCAAACCTAAAGCTTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATACTTTCTGCTCTTTTCCCCCACCAAACCTAAAGCTTGACA  550

seq1  AGCTCTGCTTTATCGATATTTAGTAAGCCTAGGCCTTCCATACTGACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCTTTATCGATATTTAGTAAGCCTAGGCCTTCCATACTGACTCA  600

seq1  TCCTGAAACCACATTCTGTGTAAAGTCAAGATCCCATCTTTACCTTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAACCACATTCTGTGTAAAGTCAAGATCCCATCTTTACCTTGAAT  650

seq1  GGGGCAAGACAGTACACAAGTTCCCCTATCTTGTATTCTTGCTGAGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGACAGTACACAAGTTCCCCTATCTTGTATTCTTGCTGAGGCCA  700

seq1  TTTCCTGGTTTAACTGGAATCTGACCTCCTTGATAGAGAATCCCATGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTTTAACTGGAATCTGACCTCCTTGATAGAGAATCCCATGGAA  750

seq1  AATTACCCAACTCTATTCTCAGAACCAAAGGTAAGTATGTCCAAGTTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCAACTCTATTCTCAGAACCAAAGGTAAGTATGTCCAAGTTAAC  800

seq1  TTTCTTAGCCTTTATTAAAACTGCCTGTTTGTGTGGAACCTCCTCCAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCCTTTATTAAAACTGCCTGTTTGTGTGGAACCTCCTCCAGCT  850

seq1  AATTGTTTATCTTAGCTCCAGTTAAAACTTCTTGCTTCAAACAGCTTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTATCTTAGCTCCAGTTAAAACTTCTTGCTTCAAACAGCTTACT  900

seq1  CTGCACCTTCTGCAGCTACAGAGCAAGACACCAAGACAGGGTTTCTACAT  950
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CTGCACCTTCTGCAGCTACAGAGC-AGACACCAAGACAGGG-TTCTACAT  948

seq1  TTAAAAACCCTGTGTTCTAGACCACTTAGGGCTACACATAAGTCTCAGAA  1000
      |||||| ||  ||||||||||||||||| |||||||||||||||||||||
seq2  TTAAAACCCTGGTGTTCTAGACCACTTA-GGCTACACATAAGTCTCAGAA  997

seq1  TA-TTTGGGTGTGGTTCCAGCCAGCTGGAATAAAGACTTTCAATTGGCTA  1049
      || ||||||||||||| ||| |||||||||||||||| ||||||||||  
seq2  TATTTTGGGTGTGGTT-CAGGCAGCTGGAATAAAGAC-TTCAATTGGCCT  1045

seq1  TATATTGTATCTG  1062
       ||||||||||||
seq2  AATATTGTATCTG  1058

seq1: chr1_132619532_132620693
seq2: B6Ng01-017D03.g_68_1219 (reverse)

seq1  CCACGTCTGGCTCATTTGCAGCACTTTAAAAATTAGAGAATAAAAGTTTA  50
      ||||||| ||||||  |||||||||||  ||||||| |||||||||||||
seq2  CCACGTC-GGCTCA--TGCAGCACTTT--AAATTAG-GAATAAAAGTTTA  44

seq1  CATAGCTCTCTAGAAGACCTCGAGGG-CAGTAATGATACAACCCCAAGCC  99
      | ||||| |||||||||||||||||| |||| ||||  ||||||| ||||
seq2  C-TAGCT-TCTAGAAGACCTCGAGGGCCAGT-ATGAATCAACCCC-AGCC  90

seq1  AGCTGCTAGCCAGCAGC-TCT-CATACGCTATTGCCATCAGTATTTATGT  147
      ||||||||||||||||| ||| ||||||||| ||||||||||||||||||
seq2  AGCTGCTAGCCAGCAGCTTCTCCATACGCTA-TGCCATCAGTATTTATGT  139

seq1  ATCTTATGATACAGTCTAATTTCACTCACTGTTAGGACCAGGGTCTATGT  197
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATC-TATGATACAGTCTAATTTCACTCACTG-TAGGACCAGGGTCTATGT  187

seq1  CCTAACGTAAGGAATAATACTTCTGTAATGTGATTGTTCTGTAATGTGAT  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACGTAAGGAATAATACTTCTGTAATGTGATTGTTCTGTAATGTGAT  237

seq1  CTCT-AAAGAGTCGATTCATCAAACCTTTCATTCATTTTAAGCAAACTTA  296
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTAAAAGAGTCGATTCATC-AACCTTTCATTCATTTTAAGCAAACTTA  286

seq1  TTTTGGAAGAAATTGATTTTTGAGTAAGATATGCAAGCAGTATTTGCAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAGAAATTGATTTTTGAGTAAGATATGCAAGCAGTATTTGCAAA  336

seq1  TCTAAAGGAACACTTTATTTGAATAAGCTAGTTTGTTACTCATGCTAAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGGAACACTTTATTTGAATAAGCTAGTTTGTTACTCATGCTAAGC  386

seq1  ATCGAACCAGGGCTTTTTGCTGCAAGGGTAAGTGCTTAGCGATCAGCATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAACCAGGGCTTTTTGCTGCAAGGGTAAGTGCTTAGCGATCAGCATT  436

seq1  CCACCCCGGATGGTTTCTTAGTGCCTATTGTAATGTGCAGCACATCCAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCGGATGGTTTCTTAGTGCCTATTGTAATGTGCAGCACATCCAAC  486

seq1  TCAATGAATACAAGGCTGCCTTGGTTGTGGGAAAGGTTTGGGTTTTTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAATACAAGGCTGCCTTGGTTGTGGGAAAGGTTTGGGTTTTTGTT  536

seq1  GTTTTTTGTTTTTCTTCAAAAATTAGCTAACATTTTGTTTACAGTGCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTCTTCAAAAATTAGCTAACATTTTGTTTACAGTGCTTT  586

seq1  GACTATTTTATTTGGAAAACAAAGTATTATGTTTACTGAATTATGAAGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTTATTTGGAAAACAAAGTATTATGTTTACTGAATTATGAAGTG  636

seq1  TTTGTGTCTACATTCATTTGATTTAAGGCAGGGTGTTAGCCTTCCCATGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCTACATTCATTTGATTTAAGGCAGGGTGTTAGCCTTCCCATGG  686

seq1  CATTTTCAAGTGAAAAGGATGGGTACTACTGAAAAGATGTATACGGCCGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAAGTGAAAAGGATGGGTACTACTGAAAAGATGTATACGGCCGT  736

seq1  GAACACAAGCTTTGAAACACATGAACCTGTAATTAGTAATTTAAGTATAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAGCTTTGAAACACATGAACCTGTAATTAGTAATTTAAGTATAG  786

seq1  TGAATGAATGACGTGGTTTAGTTATAGGTAAGGAGGCTGAGGATTTCTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGACGTGGTTTAGTTATAGGTAAGGAGGCTGAGGATTTCTAC  836

seq1  CGAGCTGATGTGGCTTGGCTCCAGAATGCATATAGAATGTTTAGTTGAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTGATGTGGCTTGGCTCCAGAATGCATATAGAATGTTTAGTTGAGT  886

seq1  GTAACCCATCAGTTACTTAAAGGACAAGGGTTGCCTGTTCACATTTGTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCATCAGTTACTTAAAGGACAAGGGTTGCCTGTTCACATTTGTGC  936

seq1  CATTCAAGGTGCCACAGGAAATGCATTTGTACCAAATTATTTGTTTTCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGGTGCCACAGGAAATGCATTTGTACCAAATTATTTGTTTTCTT  986

seq1  TAAGAATGCCTTGTCAAAGGTTCAGAATGAAAAATAGTCTTATTGTGGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGCCTTGTCAAAGGTTCAGAATGAAAAATAGTCTTATTGTGGCT  1036

seq1  GTACTAGCACAGTGGAAGCAGAGCTCCTTAAATAAGAAAATCATCAATAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGCACAGTGGAAGCAGAGCTCCTTAAATAAGAAAATCATCAATAA  1086

seq1  AGCCTGAAATACAGAGCTCAGAGCATAATTTCAAAAGTATAAAAGGGGGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAATACAGAGCTCAGAGCATAATTTCAAAAGTATAAAAGGGGGC  1136

seq1  CAAACAGAAAGAATTC  1162
      ||||||||||||||||
seq2  CAAACAGAAAGAATTC  1152