BAC Information

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BAC

Clone NameB6Ng01-017H02
Chromosome1 (Build37)
Map Location 98,936,499 - 99,101,571
singlet/doubletdoublet
Overlap geneSlco6c1, EG634331
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430
Downstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H02.bB6Ng01-017H02.g
ACCDH851128DH851129
length959413
definitionDH851128|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H02, 5' end.DH851129|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,936,499 - 98,937,116)(99,101,153 - 99,101,571)
sequence
gaattcctcatctgcactccacttacaaggccacagctctgcctgtctct
taggaagactgctaccactcaggacaagctgttcggccagcttcactgga
gaactgatgaaaaccaggacaatcagaggcttgctgccacaagggactac
cagctctacctacagtcccagagacactaggaactgccaggccagccaat
accagagacaaccaggtgactaaaggccagcgtgagaacacaatcaacaa
aaggcagggcaacatggcaccctcaaaacccagctctccatctataataa
cctgtgggatatgctaatatacctgaagaaaaagacaattaccttaaatc
caatattttaaagtttatgcaggtctttaaagaggaaatatatacatccc
ttaacaaaacaaaggaaaacaaaatcaaagtgatagtggtcttcaaagag
gaaagaaaaaaattataacgaaaatacaggaaaatacaatcatgccggtg
aaggaaatgaatagaactctccaagacttgaaaatggaaatagaattaac
aaagaaaacatcaaatgacaacaatcctggagatgagaaacctaggaaag
agaagaggaactacagatgcaagcaccagaaacagaatacaagagatgga
agagagaatttcaagcaaagaagatattaaagaagaaattgatacattgg
taaagagattgccaaatctacaaagtttctaattcaaaatatccagaaat
ttagaacactatgaatagaccaaagctaagaaaacaggaataggagtgcc
agaaaatatcttcaacaaaatcacagaagaaaacttccctaaactacaca
gagagagagagagatggctacagacatacaagaaagttacagaacaccaa
ataaattagggccagaaaagaaaatctttcctgccacataaaaatcaaaa
caccaaata
tgtgctcttgtatgctgtttgtttttttattcccttttgaatatttaatt
taccttttatctgaaagctagattatagtatgattgctatgaacttgttt
caatgtaatctgttggatgacattttatcttattgtgtctgattagttat
acaattttgattttagctatttttattgatttggaaaatcttttgatatc
tttgacatattaatgtctcacatgaattctaacaatatcattatttgttc
tttttattcattcccaaatattttattattccccctcatttttaaattat
ttttcaagtatgcgttgtcaaattgcatgccaaaagctcattaactattc
tatggtatctaatacactattgatgctttagtttaacttcgtgttattta
tgtctttgagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98936499_98937116
seq2: B6Ng01-017H02.b_45_662

seq1  GAATTCCTCATCTGCACTCCACTTACAAGGCCACAGCTCTGCCTGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATCTGCACTCCACTTACAAGGCCACAGCTCTGCCTGTCTCT  50

seq1  TAGGAAGACTGCTACCACTCAGGACAAGCTGTTCGGCCAGCTTCACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACTGCTACCACTCAGGACAAGCTGTTCGGCCAGCTTCACTGGA  100

seq1  GAACTGATGAAAACCAGGACAATCAGAGGCTTGCTGCCACAAGGGACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATGAAAACCAGGACAATCAGAGGCTTGCTGCCACAAGGGACTAC  150

seq1  CAGCTCTACCTACAGTCCCAGAGACACTAGGAACTGCCAGGCCAGCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTACCTACAGTCCCAGAGACACTAGGAACTGCCAGGCCAGCCAAT  200

seq1  ACCAGAGACAACCAGGTGACTAAAGGCCAGCGTGAGAACACAATCAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACAACCAGGTGACTAAAGGCCAGCGTGAGAACACAATCAACAA  250

seq1  AAGGCAGGGCAACATGGCACCCTCAAAACCCAGCTCTCCATCTATAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGCAACATGGCACCCTCAAAACCCAGCTCTCCATCTATAATAA  300

seq1  CCTGTGGGATATGCTAATATACCTGAAGAAAAAGACAATTACCTTAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGATATGCTAATATACCTGAAGAAAAAGACAATTACCTTAAATC  350

seq1  CAATATTTTAAAGTTTATGCAGGTCTTTAAAGAGGAAATATATACATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTAAAGTTTATGCAGGTCTTTAAAGAGGAAATATATACATCCC  400

seq1  TTAACAAAACAAAGGAAAACAAAATCAAAGTGATAGTGGTCTTCAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAACAAAGGAAAACAAAATCAAAGTGATAGTGGTCTTCAAAGAG  450

seq1  GAAAGAAAAAAATTATAACGAAAATACAGGAAAATACAATCATGCCGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAAATTATAACGAAAATACAGGAAAATACAATCATGCCGGTG  500

seq1  AAGGAAATGAATAGAACTCTCCAAGACTTGAAAATGGAAATAGAATTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGAATAGAACTCTCCAAGACTTGAAAATGGAAATAGAATTAAC  550

seq1  AAAGAAAACATCAAATGACAACAATCCTGGAGATGAGAAACCTAGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACATCAAATGACAACAATCCTGGAGATGAGAAACCTAGGAAAG  600

seq1  AGAAGAGGAACTACAGAT  618
      ||||||||||||||||||
seq2  AGAAGAGGAACTACAGAT  618

seq1: chr1_99101153_99101571
seq2: B6Ng01-017H02.g_69_487 (reverse)

seq1  AAACTCAAAGACATAAATAACACGAAGTTAAACTAAAGCATCAATAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAGACATAAATAACACGAAGTTAAACTAAAGCATCAATAGTGT  50

seq1  ATTAGATACCATAGAATAGTTAATGAGCTTTTGGCATGCAATTTGACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATACCATAGAATAGTTAATGAGCTTTTGGCATGCAATTTGACAAC  100

seq1  GCATACTTGAAAAATAATTTAAAAATGAGGGGGAATAATAAAATATTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTGAAAAATAATTTAAAAATGAGGGGGAATAATAAAATATTTGG  150

seq1  GAATGAATAAAAAGAACAAATAATGATATTGTTAGAATTCATGTGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATAAAAAGAACAAATAATGATATTGTTAGAATTCATGTGAGACA  200

seq1  TTAATATGTCAAAGATATCAAAAGATTTTCCAAATCAATAAAAATAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGTCAAAGATATCAAAAGATTTTCCAAATCAATAAAAATAGCTA  250

seq1  AAATCAAAATTGTATAACTAATCAGACACAATAAGATAAAATGTCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAATTGTATAACTAATCAGACACAATAAGATAAAATGTCATCCA  300

seq1  ACAGATTACATTGAAACAAGTTCATAGCAATCATACTATAATCTAGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTACATTGAAACAAGTTCATAGCAATCATACTATAATCTAGCTTT  350

seq1  CAGATAAAAGGTAAATTAAATATTCAAAAGGGAATAAAAAAACAAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAAGGTAAATTAAATATTCAAAAGGGAATAAAAAAACAAACAGC  400

seq1  ATACAAGAGCACAGAATTC  419
      |||||||||||||||||||
seq2  ATACAAGAGCACAGAATTC  419