BAC Information

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BAC

Clone NameB6Ng01-017O14
Chromosome1 (Build37)
Map Location 20,906,437 - 20,964,457
singlet/doubletdoublet
Overlap genePaqr8, Efhc1
Upstream genePkhd1, Il17a, Il17f, Mcm3
Downstream geneTram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017O14.bB6Ng01-017O14.g
ACCDH851455DH851456
length1,1021,122
definitionDH851455|Mus musculus domesticus DNA, BAC clone: B6Ng01-017O14, 5' end.DH851456|Mus musculus domesticus DNA, BAC clone: B6Ng01-017O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,906,437 - 20,907,549)(20,963,336 - 20,964,457)
sequence
gaattcagcagacactctgggttctcactggagaggaaaaagaatttaat
cccatgtaacacagtatttatctctaagaaatcacagcctcatgtgggtg
tagaagaaacacccagataagtacagaacaagactgtgtctgaatgggac
atcaaactaaaagaaatgcaggctatttgctgaggctcgaggtgttgctt
tggcttcatgctttggagaacatggcgagctagcgtcagagaggtgcctt
cagagatggataaaattcacaaatatggagaaagtcacacccagtaaaga
gattggcttagacgaagaccccaaaaaggaagccccagttgagcatctac
ttaaaagatgtgaccactcagatttgtttgtcaaaataaaaatctagaaa
caaaccgtttattcacaagacggtggtcaaaggaattgtggtatacttag
ccaatgagaagtggtcatatgggaaaataagtcaaatagagattataaaa
tgattaatggaaaaataaacaatattaaatgacagaaggaggctgcagaa
caagtgagaataacataagggttaaaatatactacaggatataatatttg
tggatgtgtaatttcgcaacattttgatatcattaatgttaatacttatc
cataatttcgtaatgtcttcaagagaaaacagtggtcgatgaacaaccaa
ttcagtacatagcaactgttgctggggaggaaagaggttcctgctgaatc
cgtcttactgggagattggtgactagaagaaaggtgcacacatatacact
catgcatgtatttaaaatctgaggtaaatacaacacgctaagatttgaca
aacccttgtttattgtctatacacttgaactatttaataattctaaaatg
aggtgcatggacattggtggcacccacctgcagtcgcagtacttggaaaa
tcagaagttcaagtaagagaagtcaccgagcattggtacagcagatgatg
tcgaatgtccctgagcccagtatgccatgtagggagcagcatgagttcaa
aattcaggacactgtcttacttagtagctacaggctattcctaggatatg
at
gaattctatatgtagcaaagctgtccttcagaaatgagggacaaacagag
gtatttctaaatgaaccaaagctgggggagtttgtgacctctgaacatgc
ctggcaagcagtatgcaaagtgaaaggacattagagcatcctctaaccat
tctattacactgaacacacagaggttaattgagagacattgctaagtcat
ctaaagtaaatagtattataatgttgggttgtaatgccatatttttctct
tctgtgtagtttaagagagctagagatatagctaggtagcagaagacttg
tctatcatgtgcaacatcccaggtttgatggccagcaataaaaacaagac
aaaaaggaaaaaatactttccagatgtgggagactgattgacttaaaagc
agtggggaaaccacttgaatctacagaaagtcctctgagttaatgccatg
gaagtaggtaagatagtatgttatctggatttgtacatgatttaaagctt
gaaaaaagtcagtcggtggtggtacacacctttaatcccagtattcagga
ggcagaggcaggcagatctctgtgaattccaggccagcctggtctagaga
ttaaccaggacacccaaggctacacagagaaaccttgcttctaaaagaaa
ataggaaaaaaattaaaacatcttaacactaacgtgagcttggctataaa
cgtaactattatagctgcctggtgactatcagaaggaagttctctggtca
tcctgcttgataccttcccactcctacaaaggaaagcagtgcccacaact
gatacggtatccattctgacagctgttgcttagcctttagaagcagcggt
tatattcagaactgtagatacttcggtcacttgagaaacgctatgggcat
tttccacattaatatgcaatacacttactttattttctacaggccttaca
agtttctactagtatggatagaatagttttgtcaacctcattcttcattc
tggctaaaacacgtattctttacagccctcaagcgtatttttgagaccca
gaataaccatattcccaggaatcaatgtcaacctaaccagacctcctcga
aaggttattctaactggctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20906437_20907549
seq2: B6Ng01-017O14.b_47_1148

seq1  GAATTCAGCAGACACTCTGGGTTCTCACTGGAGAGGAAAAAGAATTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGACACTCTGGGTTCTCACTGGAGAGGAAAAAGAATTTAAT  50

seq1  CCCATGTAACACAGTATTTATCTCTAAGAAATCACAGCCTCATGTGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAACACAGTATTTATCTCTAAGAAATCACAGCCTCATGTGGGTG  100

seq1  TAGAAGAAACACCCAGATAAGTACAGAACAAGACTGTGTCTGAATGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAACACCCAGATAAGTACAGAACAAGACTGTGTCTGAATGGGAC  150

seq1  ATCAAACTAAAAGAAATGCAGGCTATTTGCTGAGGCTCGAGGTGTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTAAAAGAAATGCAGGCTATTTGCTGAGGCTCGAGGTGTTGCTT  200

seq1  TGGCTTCATGCTTTGGAGAACATGGCGAGCTAGCGTCAGAGAGGTGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCATGCTTTGGAGAACATGGCGAGCTAGCGTCAGAGAGGTGCCTT  250

seq1  CAGAGATGGATAAAATTCACAAATATGGAGAAAGTCACACCCAGTAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGGATAAAATTCACAAATATGGAGAAAGTCACACCCAGTAAAGA  300

seq1  GATTGGCTTAGACGAAGACCCCAAAAAGGAAGCCCCAGTTGAGCATCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTTAGACGAAGACCCCAAAAAGGAAGCCCCAGTTGAGCATCTAC  350

seq1  TTAAAAGATGTGACCACTCAGATTTGTTTGTCAAAATAAAAATCTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGATGTGACCACTCAGATTTGTTTGTCAAAATAAAAATCTAGAAA  400

seq1  CAAACCGTTTATTCACAAGACGGTGGTCAAAGGAATTGTGGTATACTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCGTTTATTCACAAGACGGTGGTCAAAGGAATTGTGGTATACTTAG  450

seq1  CCAATGAGAAGTGGTCATATGGGAAAATAAGTCAAATAGAGATTATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGAAGTGGTCATATGGGAAAATAAGTCAAATAGAGATTATAAAA  500

seq1  TGATTAATGGAAAAATAAACAATATTAAATGACAGAAGGAGGCTGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATGGAAAAATAAACAATATTAAATGACAGAAGGAGGCTGCAGAA  550

seq1  CAAGTGAGAATAACATAAGGGTTAAAATATACTACAGGATATAATATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGAATAACATAAGGGTTAAAATATACTACAGGATATAATATTTG  600

seq1  TGGATGTGTAATTTCGCAACATTTTGATATCATTAATGTTAATACTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGTAATTTCGCAACATTTTGATATCATTAATGTTAATACTTATC  650

seq1  CATAATTTCGTAATGTCTTCAAGAGAAAACAGTGGTCGATGAACAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTCGTAATGTCTTCAAGAGAAAACAGTGGTCGATGAACAACCAA  700

seq1  TTCAGTACATAGCAACTGTTGCTGGGGAGGAAAAGAGGTTCCTGCTGAAT  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCAGTACATAGCAACTGTTGCTGGGGAGG-AAAGAGGTTCCTGCTGAAT  749

seq1  CCGTCTTACTGGGAGATTGGTGACTAGAAGAAAGGTGCACACATATACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTACTGGGAGATTGGTGACTAGAAGAAAGGTGCACACATATACAC  799

seq1  TCATGCATGTATTTAAAATCTGAGGTAAATACAACACGCTAAGATTTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGTATTTAAAATCTGAGGTAAATACAACACGCTAAGATTTGAC  849

seq1  AAACCCTTGTTTATTGTCTATACACTTGAACTATTTAATAATTCTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTGTTTATTGTCTATACACTTGAACTATTTAATAATTCTAAAAT  899

seq1  GAGGTGCATGGACATTGGTGGCACCCACCTGCAGTCGCAGTACTTGGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCATGGACATTGGTGGCACCCACCTGCAGTCGCAGTACTTGGAAA  949

seq1  ATCAGAAGTTCAAGTAAGAGAAAGTCACCGAGCATTGGGTACAGCAGATG  1000
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  ATCAGAAGTTCAAGTAAGAG-AAGTCACCGAGCATT-GGTACAGCAGATG  997

seq1  ATGTCCGAATGTCCCTTGGAGCCCAGTATGCCATGGTAGGAAGGCAGCCA  1050
      |||| |||||||||||  |||||||||||||||| ||||| | |||| ||
seq2  ATGT-CGAATGTCCCT--GAGCCCAGTATGCCAT-GTAGGGA-GCAG-CA  1041

seq1  TGAGTTCAAAATTCAAGAACAACTTGTCTTACTTAGTAGCTACAGGCTA-  1099
      |||||||||||||| || |||   ||||||||||||||||||||||||| 
seq2  TGAGTTCAAAATTC-AGGACA--CTGTCTTACTTAGTAGCTACAGGCTAT  1088

seq1  TCCTAGGATATGAT  1113
      ||||||||||||||
seq2  TCCTAGGATATGAT  1102

seq1: chr1_20963336_20964457
seq2: B6Ng01-017O14.g_69_1190 (reverse)

seq1  GAAAGCCAGTTAGAATAACCTTTCTGAGGTG--CTGTTT--GTTGTCATT  46
      |||||||||||||||||||||||| |||| |  ||| ||  |||| ||  
seq2  GAAAGCCAGTTAGAATAACCTTTC-GAGGAGGTCTGGTTAGGTTGACA--  47

seq1  TTAATTCCTTAGAATATTGTTTATCTTTGGTCTACAAAATATGCTTTGAG  96
      || ||||||  ||||| || ||||  | |||||  |||||| || |||||
seq2  TTGATTCCTGGGAATA-TGGTTATTCTGGGTCTCAAAAATACGC-TTGAG  95

seq1  GGCTGTAAAAGAATACGTGTTTTATGCAGAATGAAGAATGAGGTTGACAA  146
      |||||| |||||||||||||||||  ||||||||||||||||||||||||
seq2  GGCTGT-AAAGAATACGTGTTTTAGCCAGAATGAAGAATGAGGTTGACAA  144

seq1  AACTTATCTATCCATACTAGTAGAAACTTGTAAGGCCTGTAGAAAATAAA  196
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCTATCCATACTAGTAGAAACTTGTAAGGCCTGTAGAAAATAAA  194

seq1  GTAAGTGTA-TGCATATTAATGTGGAAAATGCCCATAGCGTTTCTCAAGT  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGTATTGCATATTAATGTGGAAAATGCCCATAGCGTTTCTCAAGT  244

seq1  GACCG-AGTATCTACAGTTCTGAATATAACCGCTGCTTCTAAAGGCTAAG  294
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAAGTATCTACAGTTCTGAATATAACCGCTGCTTCTAAAGGCTAAG  294

seq1  CAACAGCTGTCAGAATGGATACCGTATCAGTTGTGGGCACTGCTTTCCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTGTCAGAATGGATACCGTATCAGTTGTGGGCACTGCTTTCCTT  344

seq1  TGTAGGAGTGGGAAGGTATCAAGCAGGATGACCAGAGAACTTCCTTCTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGTGGGAAGGTATCAAGCAGGATGACCAGAGAACTTCCTTCTGA  394

seq1  TAGTCACCAGGCAGCTATAATAGTTACGTTTATAGCCAAGCTCACGTTAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACCAGGCAGCTATAATAGTTACGTTTATAGCCAAGCTCACGTTAG  444

seq1  TGTTAAGATGTTTTAATTTTTTTCCTATTTTCTTTTAGAAGCAAGGTTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGATGTTTTAATTTTTTTCCTATTTTCTTTTAGAAGCAAGGTTTC  494

seq1  TCTGTGTAGCCTTGGGTGTCCTGGTTAATCTCTAGACCAGGCTGGCCTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCTTGGGTGTCCTGGTTAATCTCTAGACCAGGCTGGCCTGG  544

seq1  AATTCACAGAGATCTGCCTGCCTCTGCCTCCTGAATACTGGGATTAAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGAGATCTGCCTGCCTCTGCCTCCTGAATACTGGGATTAAAGG  594

seq1  TGTGTACCACCACCGACTGACTTTTTTCAAGCTTTAAATCATGTACAAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCACCACCGACTGACTTTTTTCAAGCTTTAAATCATGTACAAAT  644

seq1  CCAGATAACATACTATCTTACCTACTTCCATGGCATTAACTCAGAGGACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAACATACTATCTTACCTACTTCCATGGCATTAACTCAGAGGACT  694

seq1  TTCTGTAGATTCAAGTGGTTTCCCCACTGCTTTTAAGTCAATCAGTCTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGATTCAAGTGGTTTCCCCACTGCTTTTAAGTCAATCAGTCTCC  744

seq1  CACATCTGGAAAGTATTTTTTCCTTTTTGTCTTGTTTTTATTGCTGGCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGGAAAGTATTTTTTCCTTTTTGTCTTGTTTTTATTGCTGGCCA  794

seq1  TCAAACCTGGGATGTTGCACATGATAGACAAGTCTTCTGCTACCTAGCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTGGGATGTTGCACATGATAGACAAGTCTTCTGCTACCTAGCTA  844

seq1  TATCTCTAGCTCTCTTAAACTACACAGAAGAGAAAAATATGGCATTACAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTAGCTCTCTTAAACTACACAGAAGAGAAAAATATGGCATTACAA  894

seq1  CCCAACATTATAATACTATTTACTTTAGATGACTTAGCAATGTCTCTCAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACATTATAATACTATTTACTTTAGATGACTTAGCAATGTCTCTCAA  944

seq1  TTAACCTCTGTGTGTTCAGTGTAATAGAATGGTTAGAGGATGCTCTAATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTCTGTGTGTTCAGTGTAATAGAATGGTTAGAGGATGCTCTAATG  994

seq1  TCCTTTCACTTTGCATACTGCTTGCCAGGCATGTTCAGAGGTCACAAACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCACTTTGCATACTGCTTGCCAGGCATGTTCAGAGGTCACAAACT  1044

seq1  CCCCCAGCTTTGGTTCATTTAGAAATACCTCTGTTTGTCCCTCATTTCTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCTTTGGTTCATTTAGAAATACCTCTGTTTGTCCCTCATTTCTG  1094

seq1  AAGGACAGCTTTGCTACATATAGAATTC  1122
      ||||||||||||||||||||||||||||
seq2  AAGGACAGCTTTGCTACATATAGAATTC  1122