BAC Information

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BAC

Clone NameB6Ng01-017P06
Chromosome1 (Build37)
Map Location 82,203,918 - 82,204,876
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017P06.bB6Ng01-017P06.g
ACCDH851487DH851488
length959254
definitionDH851487|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P06, 5' end.DH851488|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcttcatccggctaaataatttatctcatctaaattcagaaca
tggtttatactaatttgagtcaaatgatgtgtgtgtagagatacataatt
cttaaaatataaacacttggcaaagttcctttgaaatgaagaatcaaact
ccttattaaaggttacaacagcagacccccaatgcctcttttggcacttc
tgtctgggtcgtggagaactcaccaaatatggatttgaaactgggtagca
gttgccgtaagggaggaacagtcagtactagctgggatggcacacattcc
tggacaaaaaaaatttcaaccagcacatgccatgctaatttggctctgga
ggtattagccaaattagaagagtagaactcaagccatctccaggctcaca
gacaaatgaaattgctccaccgtctccttgagtaaccgtgatgtggaggt
ggaacgttcctgcttgttttaggttacaggagggaatgtggagaatgtca
gtttcttccagtactaatctaggactcacagttctaagcatagtagtttt
ctttttctcttatcttctttcccttttaactattagagccccaacccaga
gaagccagcttttatctagaatggctagagaaaaggtaactaaccactgg
agatcctaaaaggacattaatgcccctgttgttgagactccaaaggatca
taagaaaatttcttgtaatccataaaatctattatcattacattccatac
agaatacaaaggccacttatgtgctatctctcaaaacctaactggtcttt
taacagtttttctaagagctgaggggggaccaagtatggcttgggtctca
ttccacatgctccatgaccaggagttgtatggtaagaggagacaagcttg
ctattaatagtactatctggccatttaacagttgtttcccttaatggcaa
tccctcatc
tggggaattctgaattcttcagagggtataaaaatgtcagagccctgaga
ggcttgactgctgctccccctgctgttgctggctaatgctgtagcagttt
gtccagtggtcttggccaaagagaagagaagaagaaactgcatatcctga
ctcgactctcctcagcagcagtaagtagcctgacgagattggtgccccct
ttccctctaaccttctttctctcctacctggtgttggggggttggaaggg
atgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82203918_82204876
seq2: B6Ng01-017P06.b_50_1008

seq1  GAATTCATCTTCATCCGGCTAAATAATTTATCTCATCTAAATTCAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCATCCGGCTAAATAATTTATCTCATCTAAATTCAGAACA  50

seq1  TGGTTTATACTAATTTGAGTCAAATGATGTGTGTGTAGAGATACATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATACTAATTTGAGTCAAATGATGTGTGTGTAGAGATACATAATT  100

seq1  CTTAAAATATAAACACTTGGCAAAGTTCCTTTGAAATGAAGAATCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATATAAACACTTGGCAAAGTTCCTTTGAAATGAAGAATCAAACT  150

seq1  CCTTATTAAAGGTTACAACAGCAGACCCCCAATGCCTCTTTTGGCACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTAAAGGTTACAACAGCAGACCCCCAATGCCTCTTTTGGCACTTC  200

seq1  TGTCTGGGTCGTGGAGAACTCACCAAATATGGATTTGAAACTGGGTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGTCGTGGAGAACTCACCAAATATGGATTTGAAACTGGGTAGCA  250

seq1  GTTGCCGTAAGGGAGGAACAGTCAGTACTAGCTGGGATGGCACACATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCGTAAGGGAGGAACAGTCAGTACTAGCTGGGATGGCACACATTCC  300

seq1  TGGACAAAAAAAATTTCAACCAGCACATGCCATGCTAATTTGGCTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAAAAAATTTCAACCAGCACATGCCATGCTAATTTGGCTCTGGA  350

seq1  GGTATTAGCCAAATTAGAAGAGTAGAACTCAAGCCATCTCCAGGCTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAGCCAAATTAGAAGAGTAGAACTCAAGCCATCTCCAGGCTCACA  400

seq1  GACAAATGAAATTGCTCCACCGTCTCCTTGAGTAACCGTGATGTGGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGAAATTGCTCCACCGTCTCCTTGAGTAACCGTGATGTGGAGGT  450

seq1  GGAACGTTCCTGCTTGTTTTAGGTTACAGGAGGGAATGTGGAGAATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGTTCCTGCTTGTTTTAGGTTACAGGAGGGAATGTGGAGAATGTCA  500

seq1  GTTTCTTCCAGTACTAATCTAGGACTCACAGTTCTAAGCATAGTAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCCAGTACTAATCTAGGACTCACAGTTCTAAGCATAGTAGTTTT  550

seq1  CTTTTTCTCTTATCTTCTTTCCCTTTTAACTATTAGAGCCCCAACCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCTTATCTTCTTTCCCTTTTAACTATTAGAGCCCCAACCCAGA  600

seq1  GAAGCCAGCTTTTATCTAGAATGGCTAGAGAAAAGGTAACTAACCACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGCTTTTATCTAGAATGGCTAGAGAAAAGGTAACTAACCACTGG  650

seq1  AGATCCTAAAAGGACATTAATGCCCCTGTTGTTGAGACTCCAAAGGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTAAAAGGACATTAATGCCCCTGTTGTTGAGACTCCAAAGGATCA  700

seq1  TAAGAAAATTTCTTGTAATCCATAAAATCTATTATCATTACATTCCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATTTCTTGTAATCCATAAAATCTATTATCATTACATTCCATAC  750

seq1  AGAATACAAAGGCCACTTATGTGCTATCTCTCAAAACCTAACTGGTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAAAGGCCACTTATGTGCTATCTCTCAAAACCTAACTGGTCTTT  800

seq1  TAACAGTTTTTCTAAGAGCTGAGGGGGGACCAAGTATGGCTTGGGTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTTTCTAAGAGCTGAGGGGGGACCAAGTATGGCTTGGGTCTCA  850

seq1  TTCCACATGCTCCATGACCAGGAGTTGTATGGTAAGAGGAGACAAGCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATGCTCCATGACCAGGAGTTGTATGGTAAGAGGAGACAAGCTTG  900

seq1  CTATTAATAGTACTATCATGGCCATTTAACAGTTGTTTCTCTTAATGGCA  950
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CTATTAATAGTACTATC-TGGCCATTTAACAGTTGTTTCCCTTAATGGCA  949

seq1  AT-CCTCATC  959
      || |||||||
seq2  ATCCCTCATC  959