BAC Information

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BAC

Clone NameB6Ng01-018C22
Chromosome1 (Build37)
Map Location 181,238,011 - 181,373,466
singlet/doubletdoublet
Overlap geneSmyd3
Upstream geneB230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018C22.bB6Ng01-018C22.g
ACCDH851655DH851656
length1,0831,116
definitionDH851655|Mus musculus domesticus DNA, BAC clone: B6Ng01-018C22, 5' end.DH851656|Mus musculus domesticus DNA, BAC clone: B6Ng01-018C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,238,011 - 181,239,098)(181,372,340 - 181,373,466)
sequence
gaattcctgtgatctctaaagacgtaattattagaattcagctctaaagg
aatgagatgacctgacggtacctctctttggaaaacgctacagtaataaa
taactcctactctgatcttaagatattctaaaaagggtaatactttgttt
taatgggaggtgtgtcttattttctttttttaaaatagttacatcacatc
cccttccagcccctcccacatcacccctactcctcctaaattaatggcct
cttattctttaattattactgctacatatgtatgactgaatatttaaata
caaccttctgagtccatttaatgttgcctatactcatgtctttagagctg
accaattggtactggataaacaatgaggacactcattcttggggaagacc
aactctcccctctcttcacaattgtaaattgctgggattagggccctggt
gagacttctcccagccacactagcatgtcaattagtgatgtcattgttcc
ggtcttctttaggcagccatactgttaagatatcactagcaaagtctccc
tatcatatccaaaagacatagccttgcagcagacatcagatttcctggtc
ctctgtcatatctgtttccaagatccccgttccaatcttcgcctttattc
gagggcaaaggatcaatggcagagcaaatgaggcagcagagcatcctgca
ccatgctcaccaagtcctgcgtggggagacaacacagacacaaacttacc
acacacatccccttgcagtcccaggtgcgcatcatttagagtggtgcaat
gccttcctgagctaatctacaactctagattcctaagggtgcctggttca
ccatgaactttcagaggcacacatgcagcagccagacacaaggaactcac
aacaaaagactaactacttacttctgggttgttagttagacgtattgtgg
gggtctaagcacttccgaatgtagaaaagtaaacatttttagagctgtgc
tgtccaagaaagagcatgactagacaaatgtggcctatttaaatggaaat
aaatgtaagttgaattgtttaaatttcaagtcc
gaattcagggtaggtgaatgaaaggtaaaaatgctggctgactttattta
tttttaatattatggcattagaacaacagtaggttggcagtgtttagtgt
gtccacttaaagagcagttggggtctatctaacatgaaccagaacacaaa
tacatttctgtcagaaagctgcctttaaagcaaatcagggtatctgagct
gtttctagtcttaagttttatcagaagtgagtgactcagggcagccctgc
acctctttctatgttttgagtccataaaatggcacaattgcctaatatgg
tcatcaagactttttttttttcctttttccgggacagtctcactatgtaa
cttgtctggctgggattcactgtgtagatcaggctggtcacaaagatgac
agagatctgtctacctctgccttccagatccaaggcatgtaccattatgc
cctgcgccatatggaactaaaacacagcaaaacagacaaaaccataaaac
agctcactgttacatctccaggacctgttgctattatttcatgtagtttt
tgtcccttttcactgctgtctgctacgccatttgggtagcatatgccatt
ttatctatatatcagtggactctcctaataaaatatcggaattgttcata
gtttgagttgcatcatcatttgaaagcagtgacgataaggaaaaagccat
acacaagtcctgagaggagggacaaaggagagggaccggggatacatgac
atacagtattgaaagtgggttggagagagggtcataggaatgcagtgttt
ccccacttctggcccatcacaaagcctgcgtgtatttagtgagtgaataa
aggaacatatggagagagagagtgagtggttttcagatcactcagatggt
tagaaacagaatggagattaagactagaggatcagtggttctcagtcttt
ctgatgctgagaaccttcggtgcagtttctcatgtgtgttgaccctcaac
ataaaaattatttggtggctacttcgtactggtatttggccactgtatgg
attggaagataatacccggaattcgggaaatccgatacgaagcccctcct
gtgaaggtcatggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181238011_181239098
seq2: B6Ng01-018C22.b_44_1126

seq1  GAATTCCTGTGATCTCTAAAGACGTAATTATTAGAATTCAGCTCTAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGATCTCTAAAGACGTAATTATTAGAATTCAGCTCTAAAGG  50

seq1  AATGAGATGACCTGACGGTACCTCTCTTTGGAAAACGCTACAGTAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGACCTGACGGTACCTCTCTTTGGAAAACGCTACAGTAATAAA  100

seq1  TAACTCCTACTCTGATCTTAAGATATTCTAAAAAGGGTAATACTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCTACTCTGATCTTAAGATATTCTAAAAAGGGTAATACTTTGTTT  150

seq1  TAATGGGAGGTGTGTCTTATTTTCTTTTTTTAAAATAGTTACATCACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGAGGTGTGTCTTATTTTCTTTTTTTAAAATAGTTACATCACATC  200

seq1  CCCTTCCAGCCCCTCCCACATCACCCCTACTCCTCCTAAATTAATGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCAGCCCCTCCCACATCACCCCTACTCCTCCTAAATTAATGGCCT  250

seq1  CTTATTCTTTAATTATTACTGCTACATATGTATGACTGAATATTTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTTAATTATTACTGCTACATATGTATGACTGAATATTTAAATA  300

seq1  CAACCTTCTGAGTCCATTTAATGTTGCCTATACTCATGTCTTTAGAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTCTGAGTCCATTTAATGTTGCCTATACTCATGTCTTTAGAGCTG  350

seq1  ACCAATTGGTACTGGATAAACAATGAGGACACTCATTCTTGGGGAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTGGTACTGGATAAACAATGAGGACACTCATTCTTGGGGAAGACC  400

seq1  AACTCTCCCCTCTCTTCACAATTGTAAATTGCTGGGATTAGGGCCCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCCCTCTCTTCACAATTGTAAATTGCTGGGATTAGGGCCCTGGT  450

seq1  GAGACTTCTCCCAGCCACACTAGCATGTCAATTAGTGATGTCATTGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTCTCCCAGCCACACTAGCATGTCAATTAGTGATGTCATTGTTCC  500

seq1  GGTCTTCTTTAGGCAGCCATACTGTTAAGATATCACTAGCAAAGTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTTTAGGCAGCCATACTGTTAAGATATCACTAGCAAAGTCTCCC  550

seq1  TATCATATCCAAAAGACATAGCCTTGCAGCAGACATCAGATTTCCTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATCCAAAAGACATAGCCTTGCAGCAGACATCAGATTTCCTGGTC  600

seq1  CTCTGTCATATCTGTTTCCAAGATCCCCGTTCCAATCTTCGCCTTTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATATCTGTTTCCAAGATCCCCGTTCCAATCTTCGCCTTTATTC  650

seq1  GAGGGCAAAGGATCAATGGCAGAGCAAATGAGGCAGCAGAGCATCCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAAAGGATCAATGGCAGAGCAAATGAGGCAGCAGAGCATCCTGCA  700

seq1  CCATGCTCACCAAGTCCTGGGTGGGGAGACAACACAGACACAAACTTACC  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCATGCTCACCAAGTCCTGCGTGGGGAGACAACACAGACACAAACTTACC  750

seq1  ACACACATCCCCTTGCAGTCCCAGGTGCGCATCATTTAGAGTGGTGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATCCCCTTGCAGTCCCAGGTGCGCATCATTTAGAGTGGTGCAAT  800

seq1  GCCTTCCTGAGCTAATCTACAACTCTAGATTCCTAAGGGTGCCTGGTTCC  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCTTCCTGAGCTAATCTACAACTCTAGATTCCTAAGGGTGCCTGGTT-C  849

seq1  ACCATGAACTTTCAGAGGCACACATGCAGCAGCCAGACACAAGGAAACTC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCATGAACTTTCAGAGGCACACATGCAGCAGCCAGACACAAGG-AACTC  898

seq1  ACAACAAAAGACTAACTACTTACTTCTGGGTTGTTAGTTAGACGTATTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAGACTAACTACTTACTTCTGGGTTGTTAGTTAGACGTATTGT  948

seq1  GGGGGTCTAAGCACTTCCGAATGTTAGAAAAGTAAACA-TTTTAGAGCTG  999
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GGGGGTCTAAGCACTTCCGAATG-TAGAAAAGTAAACATTTTTAGAGCTG  997

seq1  TGCTGTCCAAAGAAAGAGCAATGACTAGACAAATGTGG-CTATTTAAATT  1048
      |||||||| |||||||||| |||||||||||||||||| ||||||||| |
seq2  TGCTGTCC-AAGAAAGAGC-ATGACTAGACAAATGTGGCCTATTTAAA-T  1044

seq1  GGAAATAAAATGTAAGTTGAATTGTTTAAAATTCAAGTCC  1088
      |||||| ||||||||||||||||||||||| |||||||||
seq2  GGAAAT-AAATGTAAGTTGAATTGTTTAAATTTCAAGTCC  1083

seq1: chr1_181372340_181373466
seq2: B6Ng01-018C22.g_68_1183 (reverse)

seq1  GGTCCATTGACCCTTCACAGGGGAGGGGCTTCGTATCAGATATCCTGAAT  50
      |||||| ||| ||||||||  |||||||||||||||| ||| ||| ||||
seq2  GGTCCA-TGA-CCTTCACA--GGAGGGGCTTCGTATCGGATTTCCCGAAT  46

seq1  ATCAGGTATTTATATTACAATTCATAACAGTGGCAAAATTACAGTTACGA  100
        | |||| |||| || |||| ||| |||||||| ||||  ||| |||||
seq2  TCCGGGTA-TTATCTTCCAATCCAT-ACAGTGGCCAAATACCAG-TACGA  93

seq1  AGTAGCAACAAAATAATTTTATGGTTGGGGGGGTCACCACAACATGAGGA  150
      |||||| || ||||||||||   |||  | |||||| ||| ||||||| |
seq2  AGTAGCCACCAAATAATTTTTATGTT--GAGGGTCAACAC-ACATGAGAA  140

seq1  ACTGCACGGAAGGGTCTCAGCATCAGAAAGGCTGAGAACCACTGATCTTC  200
      ||||||| ||||| |||||||||||||||| |||||||||||||||| ||
seq2  ACTGCACCGAAGGTTCTCAGCATCAGAAAGACTGAGAACCACTGATCCTC  190

seq1  TAGTCTTAAGTCTCCATTCTGTTTCTAACCATCTGAGTGATCTGAAAACC  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAA-TCTCCATTCTGTTTCTAACCATCTGAGTGATCTGAAAACC  239

seq1  ACTCACTCTCTCTCTCCATATGTTCCTTTATTCACTCACTAAATACACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTCTCTCTCCATATGTTCCTTTATTCACTCACTAAATACACGC  289

seq1  AGGCTTTGTGATGGGCCAGAAGTGGGGAAACACTGCATTCCTATGACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGTGATGGGCCAGAAGTGGGGAAACACTGCATTCCTATGACCCT  339

seq1  CTCTCCAACCCACTTTCAATACTGTATGTCATGTATCCCCGGTCCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAACCCACTTTCAATACTGTATGTCATGTATCCCCGGTCCCTCTC  389

seq1  CTTTGTCCCTCCTCTCAGGACTTGTGTATGGCTTTTTCCTTATCGTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCCTCCTCTCAGGACTTGTGTATGGCTTTTTCCTTATCGTCACT  439

seq1  GCTTTCAAATGATGATGCAACTCAAACTATGAACAATTCCGATATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAATGATGATGCAACTCAAACTATGAACAATTCCGATATTTTAT  489

seq1  TAGGAGAGTCCACTGATATATAGATAAAATGGCATATGCTACCCAAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGTCCACTGATATATAGATAAAATGGCATATGCTACCCAAATGG  539

seq1  CGTAGCAGACAGCAGTGAAAAGGGACAAAAACTACATGAAATAATAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCAGACAGCAGTGAAAAGGGACAAAAACTACATGAAATAATAGCAA  589

seq1  CAGGTCCTGGAGATGTAACAGTGAGCTGTTTTATGGTTTTGTCTGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTGGAGATGTAACAGTGAGCTGTTTTATGGTTTTGTCTGTTTTG  639

seq1  CTGTGTTTTAGTTCCATATGGCGCAGGGCATAATGGTACATGCCTTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTAGTTCCATATGGCGCAGGGCATAATGGTACATGCCTTGGAT  689

seq1  CTGGAAGGCAGAGGTAGACAGATCTCTGTCATCTTTGTGACCAGCCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGCAGAGGTAGACAGATCTCTGTCATCTTTGTGACCAGCCTGAT  739

seq1  CTACACAGTGAATCCCAGCCAGACAAGTTACATAGTGAGACTGTCCCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGTGAATCCCAGCCAGACAAGTTACATAGTGAGACTGTCCCGGA  789

seq1  AAAAGGAAAAAAAAAAAGTCTTGATGACCATATTAGGCAATTGTGCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAAAAAAAAGTCTTGATGACCATATTAGGCAATTGTGCCATT  839

seq1  TTATGGACTCAAAACATAGAAAGAGGTGCAGGGCTGCCCTGAGTCACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGACTCAAAACATAGAAAGAGGTGCAGGGCTGCCCTGAGTCACTCA  889

seq1  CTTCTGATAAAACTTAAGACTAGAAACAGCTCAGATACCCTGATTTGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATAAAACTTAAGACTAGAAACAGCTCAGATACCCTGATTTGCTT  939

seq1  TAAAGGCAGCTTTCTGACAGAAATGTATTTGTGTTCTGGTTCATGTTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCAGCTTTCTGACAGAAATGTATTTGTGTTCTGGTTCATGTTAGA  989

seq1  TAGACCCCAACTGCTCTTTAAGTGGACACACTAAACACTGCCAACCTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCCAACTGCTCTTTAAGTGGACACACTAAACACTGCCAACCTACT  1039

seq1  GTTGTTCTAATGCCATAATATTAAAAATAAATAAAGTCAGCCAGCATTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTAATGCCATAATATTAAAAATAAATAAAGTCAGCCAGCATTTT  1089

seq1  TACCTTTCATTCACCTACCCTGAATTC  1127
      |||||||||||||||||||||||||||
seq2  TACCTTTCATTCACCTACCCTGAATTC  1116