BAC Information

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BAC

Clone NameB6Ng01-018F04
Chromosome1 (Build37)
Map Location 169,160,033 - 169,277,260
singlet/doubletdoublet
Overlap geneUck2, LOC100039844, Tmco1
Upstream geneMael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
Downstream geneAldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018F04.bB6Ng01-018F04.g
ACCDH851756DH851757
length634862
definitionDH851756|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F04, 5' end.DH851757|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,276,627 - 169,277,260)(169,160,033 - 169,160,893)
sequence
gaattccatgtaaactgtgaatgcccttatgctcttcatatatagagaat
aactttctaacctggggcctagtaggtttctacacagcctattgctagga
tcaggtccttcatgaatatctgttgaaaaggctaatgagcagtaatcaaa
accagagttattgcaaccaccgctctagtgaggatgtgccccaacatcag
acaagcttgcttttattttattgtatgactacactgcagcttcagacaca
cactagaacagggcattggaacccatcacagatggtcatgagccaccacg
tggttgctgggaattgaactcaggacctctggaagagtggtcagtgctct
taaccgctgagccgcctctccagccctggacaagcttttgtaacttgaga
aaatggtctttttcttttcagtagttttaaaggataggtttaatacctat
tagcatgatattaaacaggatataaggtagtgatccaaaagttgaaagca
ctgtacaagggttattacaagagcaatacatacacgtaagaggcagaggc
agaggcagatggatttctgtgatttggaggtctacatactgggcttcagg
acagccagagctacatagtgagaccctgtctcag
gaattcctcaaaggcaggcttcacaaacgtaatgtactgtgataaaatct
gctcaaggtccctccctctttcgctgatgtccctcaatactgcaagagaa
ggaaaaacaaaacacagaaatcaagaaaacggttcgtgagggagcagacc
gggcccatgcaggtcgcccgcgtgactgagaagccggacttcaggttctt
gacctgggatggatcaacaacagatttaggaaaaaacaagttgcgttaag
tcttactaccagcaaattctactacggtgtgttctcgaacataaaaggct
gcctgaccaagaccaacaagcagctttcttgtcacaagccaacagaattt
ttacaagaaccaggaaagagcagggcgcccccactgagtccgacaacagg
gagcagctggcagcggctggcggaatgctcaccagtgttcccaaatccac
agcaaccaccaccaccaccaccaccatcccacccctcaacccctgcccac
cggggtggaaagccctttctgctcacctcgggcacagaagtttgcgaata
gaaatgcccccggtgagttctctcccattccaggcaaaagtaagccggaa
aacggaggaagcccagatggatccagagtcaccgccttccacgtctatga
tctccctcagtccctctagtcagggacctgcagccagcactttttaaaaa
cctgttttaagggccagactatcttggttctgtcactgtgctctgacctc
cccagggctcagttttcccttagagaagtgaggtaggaaggagggcctgt
cgaccaacgcagccctctgcacagctggtcattttttttttaaaagatta
tttattatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169276627_169277260
seq2: B6Ng01-018F04.b_48_681 (reverse)

seq1  CTGAGACAGGGTCTCACTATGTAGCTCTGGCTGTCCTGAAGCCCAGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGGGTCTCACTATGTAGCTCTGGCTGTCCTGAAGCCCAGTATG  50

seq1  TAGACCTCCAACTCACAGAAATCCATCTGCCTCTGCCTCTGCCTCTTACG  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTCCAAATCACAGAAATCCATCTGCCTCTGCCTCTGCCTCTTACG  100

seq1  TGTATGTATTGCTCTTGTAATAACCCTTGTACAGTGCTTTCAACTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATTGCTCTTGTAATAACCCTTGTACAGTGCTTTCAACTTTTGG  150

seq1  ATCACTACCTTATATCCTGTTTAATATCATGCTAATAGGTATTAAACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTACCTTATATCCTGTTTAATATCATGCTAATAGGTATTAAACCTA  200

seq1  TCCTTTAAAACTACTGAAAAGAAAAAGACCATTTTCTCAAGTTACAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAAACTACTGAAAAGAAAAAGACCATTTTCTCAAGTTACAAAAG  250

seq1  CTTGTCCAGGGCTGGAGAGGCGGCTCAGCGGTTAAGAGCACTGACCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCAGGGCTGGAGAGGCGGCTCAGCGGTTAAGAGCACTGACCACTC  300

seq1  TTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACGTGGTGGCTCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACGTGGTGGCTCATGAC  350

seq1  CATCTGTGATGGGTTCCAATGCCCTGTTCTAGTGTGTGTCTGAAGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGATGGGTTCCAATGCCCTGTTCTAGTGTGTGTCTGAAGCTGCA  400

seq1  GTGTAGTCATACAATAAAATAAAAGCAAGCTTGTCTGATGTTGGGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTCATACAATAAAATAAAAGCAAGCTTGTCTGATGTTGGGGCACA  450

seq1  TCCTCACTAGAGCGGTGGTTGCAATAACTCTGGTTTTGATTACTGCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTAGAGCGGTGGTTGCAATAACTCTGGTTTTGATTACTGCTCAT  500

seq1  TAGCCTTTTCAACAGATATTCATGAAGGACCTGATCCTAGCAATAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTTCAACAGATATTCATGAAGGACCTGATCCTAGCAATAGGCTG  550

seq1  TGTAGAAACCTACTAGGCCCCAGGTTAGAAAGTTATTCTCTATATATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAACCTACTAGGCCCCAGGTTAGAAAGTTATTCTCTATATATGAA  600

seq1  GAGCATAAGGGCATTCACAGTTTACATGGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  GAGCATAAGGGCATTCACAGTTTACATGGAATTC  634

seq1: chr1_169160033_169160893
seq2: B6Ng01-018F04.g_69_930

seq1  GAATTCCTCAAAGGCAGGCTTCACAAACGTAATGTACTGTGATAAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAAGGCAGGCTTCACAAACGTAATGTACTGTGATAAAATCT  50

seq1  GCTCAAGGTCCCTCCCTCTTTCGCTGATGTCCCTCAATACTGCAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGTCCCTCCCTCTTTCGCTGATGTCCCTCAATACTGCAAGAGAA  100

seq1  GGAAAAACAAAACACAGAAATCAAGAAAACGGTTCGTGAGGGAGCAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACAAAACACAGAAATCAAGAAAACGGTTCGTGAGGGAGCAGACC  150

seq1  GGGCCCATGCAGGTCGCCCGCGTGACTGAGAAGCCGGACTTCAGGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCATGCAGGTCGCCCGCGTGACTGAGAAGCCGGACTTCAGGTTCTT  200

seq1  GACCTGGGATGGATCAACAACAGATTTAGGAAAAAACAAGTTGCGTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGATGGATCAACAACAGATTTAGGAAAAAACAAGTTGCGTTAAG  250

seq1  TCTTACTACCAGCAAATTCTACTACGGTGTGTTCTCGAACATAAAAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTACCAGCAAATTCTACTACGGTGTGTTCTCGAACATAAAAGGCT  300

seq1  GCCTGACCAAGACCAACAAGCAGCTTTCTTGTCACAAGCCAACAGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCAAGACCAACAAGCAGCTTTCTTGTCACAAGCCAACAGAATTT  350

seq1  TTACAAGAACCAGGAAAGAGCAGGGCGCCCCCACTGAGTCCGACAACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGAACCAGGAAAGAGCAGGGCGCCCCCACTGAGTCCGACAACAGG  400

seq1  GAGCAGCTGGCAGCGGCTGGCGGAATGCTCACCAGTGTTCCCAAATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTGGCAGCGGCTGGCGGAATGCTCACCAGTGTTCCCAAATCCAC  450

seq1  AGCAACCACCACCACCACCACCACCATCCCACCCCTCAACCCCTGCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCACCACCACCACCACCACCATCCCACCCCTCAACCCCTGCCCAC  500

seq1  CGGGGTGGAAAGCCCTTTCTGCTCACCTCGGGCACAGAAGTTTGCGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTGGAAAGCCCTTTCTGCTCACCTCGGGCACAGAAGTTTGCGAATA  550

seq1  GAAATGCCCCCGGTGAGTTCTCTCCCATTCCAGGCAAAAGTAAGCCGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCCCCGGTGAGTTCTCTCCCATTCCAGGCAAAAGTAAGCCGGAA  600

seq1  AACGGAGGAAGCCCAGATGGATCCAGAGTCACCGCCTTCCACGTCTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGGAAGCCCAGATGGATCCAGAGTCACCGCCTTCCACGTCTATGA  650

seq1  TCTCCCTCAGTCCCTCTAGTCAGGGACCTGCAGCCAGCACTTTTTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCAGTCCCTCTAGTCAGGGACCTGCAGCCAGCACTTTTTAAAAA  700

seq1  CCTGTTTTAAGGGCCAGACTATCTTGGTTCTGTCACTGTGCTCTGACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTAAGGGCCAGACTATCTTGGTTCTGTCACTGTGCTCTGACCTC  750

seq1  CCCAGGGCTCAG-TTTCCCTTAGAGAAGTGAGGTAGGAAGGAGGGCCTGT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCTCAGTTTTCCCTTAGAGAAGTGAGGTAGGAAGGAGGGCCTGT  800

seq1  CGACCAACGCAGCCCTCTGCACAGCT-GTCATTTTTTTTTTAAAGATTTA  848
      |||||||||||||||||||||||||| |||||||||||||||||   |||
seq2  CGACCAACGCAGCCCTCTGCACAGCTGGTCATTTTTTTTTTAAAAGATTA  850

seq1  TTTATTTATTTAT  861
      |||| ||||||||
seq2  TTTA-TTATTTAT  862