BAC Information

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BAC

Clone NameB6Ng01-018F05
Chromosome1 (Build37)
Map Location 142,078,740 - 142,201,414
singlet/doubletdoublet
Overlap geneCfh, Kcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018F05.bB6Ng01-018F05.g
ACCDH851758DH851759
length1,2051,060
definitionDH851758|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F05, 5' end.DH851759|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,078,740 - 142,079,972)(142,200,352 - 142,201,414)
sequence
gaattctttagtgaagaggctacagcaaagcctcaagttacaaagcatta
gctaagagaaacatttaaggaaattattaaagttatgtcattcacttgaa
ataaaaagtcagggatggcagtcactcccacctgtaacctcagcccatgg
gaggctgtcaggaggactacagtgagtccaagggtgtagtgacaccctat
cttaaacaatcaaaacacaaagaagagttaattaattgttttttcacata
actagttgcctatcataaattagcagagtaaactctttcgatggataaac
taagcaatttttggtagaatttaagtgaataataaagtcggaatttctgt
tactgccatgaaagaagaactccaacactcatattacctacctcaaaatg
gctttcagaagcaaatatgcctcacatgtactctcagaaaacaaaaccag
gaacaaatcagatccttccaatactgtgtacagattatctgtcaaatttt
ataatcattttatctcatgcttgcagttcttatgaacaaaacttttaaag
ccatggcagtatcagtaaaatgatgtatttatgaagggttagaaatatgc
ctgaaataaatccactcattaaaataaaagtgaatgctttcattaagttt
ggatgtttacatatttcttactagttttacataaaatatttcagggacac
tcatgaacaaaacaggagcctgtatcatgataactaaaagttgaatgact
atgcccaattatagattgcaaatggttgtttaaagcactgtctcgagttt
tacatttcgccaaattatcaactacaatagtcaaatgaacagtttacagt
ttttaaacttaccacccaaatccactaagtaacagactagtaattacata
tattttccagacataatttgaatgattgctgtgagaaacatttctgcaaa
tgtttatatttgctcagcaagaaggagaaaagaatgttccagctactttc
tgctgcacaacagtcatatatagccaatattcttgctgacattctcataa
tttggatctttctgggacaactgacctcagaaggaatctgtgctgtacta
tcagttctctctgctatgaactgtggtcacagcagtaagacttgcttcaa
ggaattgaggtcagttagaatcggctgtccgccatagaccacttctgcaa
agtaa
gaattccctataaattgtacacttgataggcttctccccacacagtgtga
catggactttgtcttcgtacttgttcttgggttctttttaaaccattctt
gtaagctgtcattccgtaaaacaggttatcattcactgctccagtcctgt
ggaaccacttcaagctcttgaaggacattgcaggacagactttaatctat
tttgaggcctgttgtgtgatgaagaagatttgagggctctatgttagtca
ttaagttccagagaactaattgagatagaaaagtaagggtgctgaagaaa
tgtctgtaataatctgggtaatcaaacttcacacacttcttgtcccctaa
gtcactgatctttacaaacttaccatggtctctggggtgtcatgatatga
tagcaatctgctctgaagcctcaaaaataactgagtaataaaacttcaac
ttctgcattttttcaaatacttcttacacattaagaattttaagtattta
gcttgcacttttttttttttttttttttactttttcaaatatatgtacgg
gtataaatacatttgagcaataatttttggactgaataagagctattgtt
tctgcattttttcttagttcttgttttgttttagttcttcctttggaaat
aaatattaggagaatttggatttgagactaaacaaaaacctggaaattag
ttcaggtatgacaacgtaagtgaaaaataattgaattctgattatgaact
tccttagtagtggattattgtgtgatgctttcggatgttatttctgaaaa
tctaatctaagaaaggaaaaaccttatataatttaaaatgatggctaaaa
tcattttaacaagtaaaccaagtaaataacatctaaaatgttttttgatg
ataaaatatcttaaaataaaatgataagactttaacagaatcatctgaga
atctcgatcatttagaataatctagagatggttctcctggagactttatt
ttgattgtgctaattcatgaacaatgctgccactgaggtgatgccattcc
ctactgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142078740_142079972
seq2: B6Ng01-018F05.b_47_1251

seq1  GAATTCTTTAGTGAAGAGGCTACAGCAAAGCCTCAAGTTACAAAGCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTGAAGAGGCTACAGCAAAGCCTCAAGTTACAAAGCATTA  50

seq1  GCTAAGAGAAACATTTAAGGAAATTATTAAAGTTATGTCATTCACTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGAAACATTTAAGGAAATTATTAAAGTTATGTCATTCACTTGAA  100

seq1  ATAAAAAGTCAGGGATGGCAGTCACTCCCACCTGTAACCTCAGCCCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGTCAGGGATGGCAGTCACTCCCACCTGTAACCTCAGCCCATGG  150

seq1  GAGGCTGTCAGGAGGACTACAGTGAGTCCAAGGGTGTAGTGACACCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTCAGGAGGACTACAGTGAGTCCAAGGGTGTAGTGACACCCTAT  200

seq1  CTTAAACAATCAAAACACAAAGAAGAGTTAATTAATTGTTTTTTCACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACAATCAAAACACAAAGAAGAGTTAATTAATTGTTTTTTCACATA  250

seq1  ACTAGTTGCCTATCATAAATTAGCAGAGTAAACTCTTTCGATGGATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTGCCTATCATAAATTAGCAGAGTAAACTCTTTCGATGGATAAAC  300

seq1  TAAGCAATTTTTGGTAGAATTTAAGTGAATAATAAAGTCGGAATTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATTTTTGGTAGAATTTAAGTGAATAATAAAGTCGGAATTTCTGT  350

seq1  TACTGCCATGAAAGAAGAACTCCAACACTCATATTACCTACCTCAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCATGAAAGAAGAACTCCAACACTCATATTACCTACCTCAAAATG  400

seq1  GCTTTCAGAAGCAAATATGCCTCACATGTACTCTCAGAAAACAAAACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGAAGCAAATATGCCTCACATGTACTCTCAGAAAACAAAACCAG  450

seq1  GAACAAATCAGATCCTTCCAATACTGTGTACAGATTATCTGTCAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATCAGATCCTTCCAATACTGTGTACAGATTATCTGTCAAATTTT  500

seq1  ATAATCATTTTATCTCATGCTTGCAGTTCTTATGAACAAAACTTTTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATTTTATCTCATGCTTGCAGTTCTTATGAACAAAACTTTTAAAG  550

seq1  CCATGGCAGTATCAGTAAAATGATGTATTTATGAAGGGTTAGAAATATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAGTATCAGTAAAATGATGTATTTATGAAGGGTTAGAAATATGC  600

seq1  CTGAAATAAATCCACTCATTAAAATAAAAGTGAATGCTTTCATTAAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAAATCCACTCATTAAAATAAAAGTGAATGCTTTCATTAAGTTT  650

seq1  GGATGTTTACATATTTCTTACTAGTTTTACATAAAATATTTCAGGGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTACATATTTCTTACTAGTTTTACATAAAATATTTCAGGGACAC  700

seq1  TCATGAACAAAACAGGAGCCTGTATCATGATAACTAAAAGTTGAATGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACAAAACAGGAGCCTGTATCATGATAACTAAAAGTTGAATGACT  750

seq1  ATGCCCAATTATAGATTGCAAATGGTTGTTTAAAGCACTGTCTCGAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAATTATAGATTGCAAATGGTTGTTTAAAGCACTGTCTCGAGTTT  800

seq1  TACATTTCGCCAAATTATCAACTACAATAGTCAAATGAACAGTTTACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCGCCAAATTATCAACTACAATAGTCAAATGAACAGTTTACAGT  850

seq1  TTTTAAACTTACCACCCAAATCCACTAAGTAACAGACTAGTAATTACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACTTACCACCCAAATCCACTAAGTAACAGACTAGTAATTACATA  900

seq1  TATTTTCCAGACATAATTTGAATGATTGCTGTGAGAAACATTTTCTGCAA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATTTTCCAGACATAATTTGAATGATTGCTGTGAGAAACA-TTTCTGCAA  949

seq1  ATGTTTTATAATTTGGCTCAGCAAGAAGGAGAAAAGAATGTTTCCAGCTT  1000
      ||| ||||||  || ||||||||||||||||||||||||| ||||||| |
seq2  ATG-TTTATA--TTTGCTCAGCAAGAAGGAGAAAAGAATG-TTCCAGC-T  994

seq1  ACCTTCTGCTGCACAAACAGTCCATAATATA-AGCCAAATAATTCTTGCT  1049
      || ||||||||||| |||||||    ||||| ||||||   |||||||||
seq2  ACTTTCTGCTGCAC-AACAGTC----ATATATAGCCAA--TATTCTTGCT  1037

seq1  GACAGTCTCATAATTTGGATCTTTCTGGGACCAACTGACTCCAAGAGAAA  1099
      |||| ||||||||||||||||||||||||| ||||||||  ||  || ||
seq2  GACATTCTCATAATTTGGATCTTTCTGGGA-CAACTGACCTCAGAAGGAA  1086

seq1  TCTGTGCTGTACCATCCAGTTCCTCTCTGCTATGAACTGTGGTCACAGCA  1149
      |||||||||||| || ||||| ||||||||||||||||||||||||||||
seq2  TCTGTGCTGTACTAT-CAGTT-CTCTCTGCTATGAACTGTGGTCACAGCA  1134

seq1  GGGAAAGACTTGCTTCAAAGGGAAGTTGAAAGTCAGTTTAGGAAATCAGG  1199
        | ||||||||||||||  |||| ||| | ||||| ||||  |||| ||
seq2  --GTAAGACTTGCTTCAA--GGAA-TTG-AGGTCAG-TTAG--AATC-GG  1174

seq1  ATTGCTCCGCCCATGAGCAACTTCTGCAAAGTAA  1233
       |   |||| ||||   | |||||||||||||||
seq2  CT--GTCCG-CCATAGACCACTTCTGCAAAGTAA  1205

seq1: chr1_142200352_142201414
seq2: B6Ng01-018F05.g_67_1126 (reverse)

seq1  TTATCAGTAGGGAATGGCATCACCCTCAGTGGCACGGCATTGTTCCATGA  50
      |||||||||||||||||||||| |||||||||||  |||||||| |||||
seq2  TTATCAGTAGGGAATGGCATCA-CCTCAGTGGCA--GCATTGTT-CATGA  46

seq1  ATTAGCACAATCAAAATAATGTCTC--AGAGAACCATCTCTTAGATTATT  98
      ||||||||||||||||||| |||||   |||||||||||| |||||||||
seq2  ATTAGCACAATCAAAATAAAGTCTCCAGGAGAACCATCTC-TAGATTATT  95

seq1  CTAAATGATCGAGATTCTCAGATGATTCTGTTAACAGTACTATCA-TTTA  147
      |||||||||||||||||||||||||||||||||| |||  ||||| ||||
seq2  CTAAATGATCGAGATTCTCAGATGATTCTGTTAA-AGTCTTATCATTTTA  144

seq1  ATTTAAGATATTGTTATCATCATAAAACATTTTAGATGTTATTTTACTT-  196
       ||||||||||| ||||||||| |||||||||||||||||| ||||||| 
seq2  TTTTAAGATATT-TTATCATCAAAAAACATTTTAGATGTTA-TTTACTTG  192

seq1  GTTTACTTGTTAAAATGATTTTAGCCATCATTTTAAATTATATAAGGTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTGTTAAAATGATTTTAGCCATCATTTTAAATTATATAAGGTTT  242

seq1  TT-CTTTCTTAGATTAGATTTTCAGAATTAACATCCGAAAGCATCACACA  295
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCCTTTCTTAGATTAGATTTTCAGAAATAACATCCGAAAGCATCACACA  292

seq1  ATAATCCACTACTAAGGAAGTTCATAATCAGAATTCAATTATTTTTCACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCACTACTAAGGAAGTTCATAATCAGAATTCAATTATTTTTCACT  342

seq1  TACGTTGTCATACCTGAACTAATTTCCAGGTTTTTGTTTAGTCTCAAATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTGTCATACCTGAACTAATTTCCAGGTTTTTGTTTAGTCTCAAATC  392

seq1  CAAATTCTCCTAATATTTATTTCCAAAGGAAGAACTAAAACAAAACAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTCCTAATATTTATTTCCAAAGGAAGAACTAAAACAAAACAAGA  442

seq1  ACTAAGAAAAAATGCAGAAACAATAGCTCTTATTCAGTCCAAAAATTATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAAAAATGCAGAAACAATAGCTCTTATTCAGTCCAAAAATTATT  492

seq1  GCTCAAATGTATTTATACCCGTACATATATTTGAAAAAGTAAAAAAAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATGTATTTATACCCGTACATATATTTGAAAAAGTAAAAAAAAAA  542

seq1  AAAAAAAAAAGTGCAAGCTAAATACTTAAAATTCTTAATGTGTAAGAAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGTGCAAGCTAAATACTTAAAATTCTTAATGTGTAAGAAGT  592

seq1  ATTTGAAAAAATGCAGAAGTTGAAGTTTTATTACTCAGTTATTTTTGAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAAAATGCAGAAGTTGAAGTTTTATTACTCAGTTATTTTTGAGG  642

seq1  CTTCAGAGCAGATTGCTATCATATCATGACACCCCAGAGACCATGGTAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGCAGATTGCTATCATATCATGACACCCCAGAGACCATGGTAAG  692

seq1  TTTGTAAAGATCAGTGACTTAGGGGACAAGAAGTGTGTGAAGTTTGATTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAGATCAGTGACTTAGGGGACAAGAAGTGTGTGAAGTTTGATTA  742

seq1  CCCAGATTATTACAGACATTTCTTCAGCACCCTTACTTTTCTATCTCAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTATTACAGACATTTCTTCAGCACCCTTACTTTTCTATCTCAAT  792

seq1  TAGTTCTCTGGAACTTAATGACTAACATAGAGCCCTCAAATCTTCTTCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCTGGAACTTAATGACTAACATAGAGCCCTCAAATCTTCTTCAT  842

seq1  CACACAACAGGCCTCAAAATAGATTAAAGTCTGTCCTGCAATGTCCTTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACAGGCCTCAAAATAGATTAAAGTCTGTCCTGCAATGTCCTTCA  892

seq1  AGAGCTTGAAGTGGTTCCACAGGACTGGAGCAGTGAATGATAACCTGTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGAAGTGGTTCCACAGGACTGGAGCAGTGAATGATAACCTGTTT  942

seq1  TACGGAATGACAGCTTACAAGAATGGTTTAAAAAGAACCCAAGAACAAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAATGACAGCTTACAAGAATGGTTTAAAAAGAACCCAAGAACAAGT  992

seq1  ACGAAGACAAAGTCCATGTCACACTGTGTGGGGAGAAGCCTATCAAGTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGACAAAGTCCATGTCACACTGTGTGGGGAGAAGCCTATCAAGTGT  1042

seq1  ACAATTTATAGGGAATTC  1063
      ||||||||||||||||||
seq2  ACAATTTATAGGGAATTC  1060