BAC Information

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BAC

Clone NameB6Ng01-018N19
Chromosome5 (Build37)1 (Build37)
Map Location 45,220,543 - 45,221,65290,506,037 - 90,506,102
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018N19.bB6Ng01-018N19.g
ACCDH852136DH852137
length1,1091,022
definitionDH852136|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N19, 5' end.DH852137|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,220,543 - 45,221,652)(90,506,037 - 90,506,102)
sequence
gaattctcccataggcttttttgaacatcatcggccaacaagatctgaca
atatccagtccccactgctgtttttctctagatcaccaggtaatagatat
ctgtgacatcttgagtgagattgttgtcccctttgttctgaagtcactac
cctcatctgcctcctgttccacacagctgtccaagggggcggggaggtag
tacagatgggtagttttcaaggctgattatacttacctcataatacaagc
actcagtacagatgaactccccagtgtctacatgaaaaggtaaaatgcat
ttcagtatgcaagcaaatggctgaagtatgaattgacacattccaaatat
aaaccctttcacctgtcagaaatacatagcctatatgcatgcattatttt
tgtgtgattggcataaaaacgagtagcaatgcttaattgcattaattagc
aactacacttaattattttcattagcaaaatattcattttaaaatttctc
ctcttaaaagcaaaacttgagggtcatcatccacttttctacctgggaga
gtaggttacctcctccctcaggtggtgagcagcattcattttccctttgg
aatgtttattatagccatatatatcctaagacaagttaaacattgcaata
ccccttttattaatattgtaaatggctatgatattgtcttaggatttcac
agtatgtcaagcttcagtagtcagcatggtgagtgacccagatcttaccc
agctacctcttgagagaatgaagctctctttgagcctcgggttttgactc
catcttagtctgccagccactgaggcctctacacagactccttggtatca
atccctaccacattcaaattgaaggtatacgtccaatttattttgctata
catgagttttgttgcatgatgtttccagttttaaaatcagacatttaggc
aggtatgagatagtccacagtaaaggcacttgccacaactcttttatcta
ctttgaacctaaataaatggcttctttagaaagaaacctaagatgtgaga
aagccaaaccatatatgccagttccagatgcaatgttgctggcaccaagg
tggtggcca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccatttttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacttctcctgggc
atatatccagaagatttccccaccggtaagaagaacacatgctccactat
gttcatagcagccttatttataaaagccagaagctggaaagaaccctgat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattacaaaaaatgaatttatgaaattcctaggcaa
atggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaa
ggaacttgcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaacttcccaaacgcatgaaattcaa
gaagaatgaagaccaaagtgtggacactttaccctttcttataaatggga
acaaaacacccatagaaggagttacagagacaaaatttggagctgtgatg
aaaggatggaccatctagtgattgccatatacagggatccatcacataat
cagcttccaaatgctgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagctctctcttgtgagactatgccggggcctagcaac
acagaagtggatgatcacagtcagctaatggatgggtcacacggccccta
atggaggagctagagaaattacccaaggagctaaagggaactgcaaccct
ataggtggaacaacaatatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_45220543_45221652
seq2: B6Ng01-018N19.b_46_1154

seq1  GAATTCTCCCATAGGCTTTTTTGAACATCATCGGCCAACAAGATCTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCATAGGCTTTTTTGAACATCATCGGCCAACAAGATCTGACA  50

seq1  ATATCCAGTCCCCACTGCTGTTTTTCTCTAGATCACCAGGTAATAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGTCCCCACTGCTGTTTTTCTCTAGATCACCAGGTAATAGATAT  100

seq1  CTGTGACATCTTGAGTGAGATTGTTGTCCCCTTTGTTCTGAAGTCACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACATCTTGAGTGAGATTGTTGTCCCCTTTGTTCTGAAGTCACTAC  150

seq1  CCTCATCTGCCTCCTGTTCCACACAGCTGTCCAAGGGGGCGGGGAGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTGCCTCCTGTTCCACACAGCTGTCCAAGGGGGCGGGGAGGTAG  200

seq1  TACAGATGGGTAGTTTTCAAGGCTGATTATACTTACCTCATAATACAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGGTAGTTTTCAAGGCTGATTATACTTACCTCATAATACAAGC  250

seq1  ACTCAGTACAGATGAACTCCCCAGTGTCTACATGAAAAGGTAAAATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTACAGATGAACTCCCCAGTGTCTACATGAAAAGGTAAAATGCAT  300

seq1  TTCAGTATGCAAGCAAATGGCTGAAGTATGAATTGACACATTCCAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATGCAAGCAAATGGCTGAAGTATGAATTGACACATTCCAAATAT  350

seq1  AAACCCTTTCACCTGTCAGAAATACATAGCCTATATGCATGCATTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTTCACCTGTCAGAAATACATAGCCTATATGCATGCATTATTTT  400

seq1  TGTGTGATTGGCATAAAAACGAGTAGCAATGCTTAATTGCATTAATTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATTGGCATAAAAACGAGTAGCAATGCTTAATTGCATTAATTAGC  450

seq1  AACTACACTTAATTATTTTCATTAGCAAAATATTCATTTTAAAATTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACACTTAATTATTTTCATTAGCAAAATATTCATTTTAAAATTTCTC  500

seq1  CTCTTAAAAGCAAAACTTGAGGGTCATCATCCACTTTTCTACCTGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAAGCAAAACTTGAGGGTCATCATCCACTTTTCTACCTGGGAGA  550

seq1  GTAGGTTACCTCCTCCCTCAGGTGGTGAGCAGCATTCATTTTCCCTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTACCTCCTCCCTCAGGTGGTGAGCAGCATTCATTTTCCCTTTGG  600

seq1  AATGTTTATTATAGCCATATATATCCTAAGACAAGTTAAACATTGCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATTATAGCCATATATATCCTAAGACAAGTTAAACATTGCAATA  650

seq1  CCCCTTTTATTAATATTGTAAATGGCTATGATATTGTCTTAGGATTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTATTAATATTGTAAATGGCTATGATATTGTCTTAGGATTTCAC  700

seq1  AGTATGTCAAGCTTCAGTAGTCAGCATGGTGAGTGACCCAGATCTTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCAAGCTTCAGTAGTCAGCATGGTGAGTGACCCAGATCTTACCC  750

seq1  AGCTACCTCTTGAGAGAATGAAGCTCTC-TTGAGCCTCGGGTTTTGACTC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCTACCTCTTGAGAGAATGAAGCTCTCTTTGAGCCTCGGGTTTTGACTC  800

seq1  CATCTTAGTCTGCCAGCCACTGAGGCCTCTACACAGACTCCTTGGTATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGTCTGCCAGCCACTGAGGCCTCTACACAGACTCCTTGGTATCA  850

seq1  ATCCCTACCACATTCAAATTGAAGGTATACGTCCAATTTATTTTGCTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTACCACATTCAAATTGAAGGTATACGTCCAATTTATTTTGCTATA  900

seq1  CATGAGTTTTGTTGCAATGATGTTTCCAGTTTTAAAATCAGACATTTTAG  949
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  CATGAGTTTTGTTGC-ATGATGTTTCCAGTTTTAAAATCAGACA-TTTAG  948

seq1  GCAGGTATGAGATAGTCCCACAAGTAAAGGCAC-TGCCACAACTCTTTTA  998
      |||||||||||||||| |||| ||||||||||| ||||||||||||||||
seq2  GCAGGTATGAGATAGT-CCAC-AGTAAAGGCACTTGCCACAACTCTTTTA  996

seq1  TCTAC-TTGAACCTAAATAAATGGC-TCTTTAG-AAGAAACCTAAGATAG  1045
      ||||| ||||||||||||||||||| ||||||| |||||||||||||| |
seq2  TCTACTTTGAACCTAAATAAATGGCTTCTTTAGAAAGAAACCTAAGAT-G  1045

seq1  TGAGAAAGCCAAACCAT-TATTGCAGTTCCAGGTTGCAATGTTTGCT-GC  1093
      ||||||||||||||||| |||  |||||||| | ||||||| ||||| ||
seq2  TGAGAAAGCCAAACCATATATGCCAGTTCCA-GATGCAATG-TTGCTGGC  1093

seq1  AGCAGAGGTGGTGGCCA  1110
      | || ||||||||||||
seq2  ACCA-AGGTGGTGGCCA  1109

seq1: chr1_90506037_90506102
seq2: B6Ng01-018N19.g_1015_1080 (reverse)

seq1  TGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTT  50
      |||||||||||||||||||||||||  ||||||||||||||||||| |||
seq2  TGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTAATTT  50

seq1  CTCTAGCTCCTCCATT  66
      ||||||||||||||||
seq2  CTCTAGCTCCTCCATT  66