BAC Information

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BAC

Clone NameB6Ng01-018O09
Chromosome1 (Build37)
Map Location 160,847,596 - 160,848,726
singlet/doubletsinglet
Overlap genePappa2
Upstream gene6430517E21Rik, Astn1
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018O09.bB6Ng01-018O09.g
ACCDH852162DH852163
length1,1271,015
definitionDH852162|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O09, 5' end.DH852163|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagagctattaatttagtcaacgatgtcctttattgttgactc
tgatctcaatgtactcccgtgttaaaatgtcatgccagtgtcatagcaag
aagacatgggtaccctggaaagtgagtcatgagggctctatcttcctttg
tacttcttcattaatgaaatgggtacccttgtaaataggatggcaagaag
ctgcacctccttctaccacacaggattaaatggactaagataccactccc
cctcattttatttcttttgatcttaaattggcctatcagaagttcatgaa
aatagcagaattctctctatcgtaccaattataccaacaggcttgaccaa
ctctttctacttcagctgtgttcaagtgaacatcccaaccacttgtcttt
ctataacttaccatcatcatgatgataatgacatttgcttcaaaaaccta
aaagaaaagaagctggtaagtgagctctggaagtaactgttagcctgagc
cagccacactcgggtttatagagacattcaaaatcactcttgtttctcct
taaaccacagtatttacatgtgtactttaaatcactttatttagtaaatg
tactgagtacctacctctggaaaatcagtgtatgctctactgaaaaatca
ccttgtgtcccggaagtagtatgaatcggaggtgaaccatagtactccac
cctcatgggctctcaggacagcctgtgctcaacataagtgtaagccttta
taccctgtaccattgccaatgagaatactacagggactttctcctgtttg
ctcgctccatcctattctatcagcttcctcagtcataaaggtgaaaaact
gtggaatgctttaagtgtaaagataactcactaatagggacactatgaaa
gtgatgtctgacgataatcatgattaaagccctaaccaacacacatttgt
aaaagggactcttattactacctttcaggagagcacaaagatcatagttt
cccatcatcaggaagtggtgtttactagaactcagtactaacacaaacaa
tccattaaccaagcttcacttcctttggtaatataagagggcctcataag
aattgactgagccagaaagaaaagaaa
gaattcagttttgtataaatatgtagtacaacatgtcagaaatatgttta
gagccatttcagaaattgttagaaattctgcctgtgttcaatccaaaatt
cacataacgactttttttttaaattaaactcaaataaacaactccaatag
caattttaaaaatcaaacagtctaacacgatatgatccaaagatatacta
acttgacataggctaaggagtgataacaggaaaatattaaaaatcttttt
cataattaaaatagtatgcttgttttagaatagaaatcttccaatgattt
agaaactgcacagtgaggaaactggcttttataacaagtagacttgtgtc
tgattctggcaggttattggtgatgtatggagtgactgtacctgtgcatt
gaaaagagagaggggcacactcagaaccaagaccggagggaagtcacagc
ttgaagcatgggagagtgcttccagaaattcatattggatttggagttaa
cttttggtggctgcacattgggaaattttctgttgccaacattttctcta
ccaattgcagctgacagcttcaggagccaggttctagactaggtgaacct
gaatgagaggctgacgtctggcaacaaggagccttcctagagagagcaaa
cagatcctaactgagaaagcatcactaccctgaataaatacttcatgtcc
ccagagacaacgaagaagaaattctgaggaatagtcaacccctgatgaga
atggacaagaagtaacaaaaatgtgaaatgaaaacatgatcatgtttaaa
acacacaacaattccaagaatactttgcactgatccgccttgcgccagcg
ttctccaagtggcgtcttctctaatcgaggatggatctggtttctaatct
gggaaccatgcttgggtcagttgattttaattttcacttggatgtaaagg
ggagagctggcctgtggttagttccagtcccaaggtgagtctcaggtaaa
tggcatcctcctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160847596_160848726
seq2: B6Ng01-018O09.b_45_1171

seq1  GAATTCTTAGAGCTATTAATTTAGTCAACGATGTCCTTTATTGTTGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGCTATTAATTTAGTCAACGATGTCCTTTATTGTTGACTC  50

seq1  TGATCTCAATGTACTCCCGTGTTAAAATGTCATGCCAGTGTCATAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAATGTACTCCCGTGTTAAAATGTCATGCCAGTGTCATAGCAAG  100

seq1  AAGACATGGGTACCCTGGAAAGTGAGTCATGAGGGCTCTATCTTCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGGTACCCTGGAAAGTGAGTCATGAGGGCTCTATCTTCCTTTG  150

seq1  TACTTCTTCATTAATGAAATGGGTACCCTTGTAAATAGGATGGCAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTCATTAATGAAATGGGTACCCTTGTAAATAGGATGGCAAGAAG  200

seq1  CTGCACCTCCTTCTACCACACAGGATTAAATGGACTAAGATACCACTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTCCTTCTACCACACAGGATTAAATGGACTAAGATACCACTCCC  250

seq1  CCTCATTTTATTTCTTTTGATCTTAAATTGGCCTATCAGAAGTTCATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTTATTTCTTTTGATCTTAAATTGGCCTATCAGAAGTTCATGAA  300

seq1  AATAGCAGAATTCTCTCTATCGTACCAATTATACCAACAGGCTTGACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGAATTCTCTCTATCGTACCAATTATACCAACAGGCTTGACCAA  350

seq1  CTCTTTCTACTTCAGCTGTGTTCAAGTGAACATCCCAACCACTTGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTACTTCAGCTGTGTTCAAGTGAACATCCCAACCACTTGTCTTT  400

seq1  CTATAACTTACCATCATCATGATGATAATGACATTTGCTTCAAAAACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTTACCATCATCATGATGATAATGACATTTGCTTCAAAAACCTA  450

seq1  AAAGAAAAGAAGCTGGTAAGTGAGCTCTGGAAGTAACTGTTAGCCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAGCTGGTAAGTGAGCTCTGGAAGTAACTGTTAGCCTGAGC  500

seq1  CAGCCACACTCGGGTTTATAGAGACATTCAAAATCACTCTTGTTTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACTCGGGTTTATAGAGACATTCAAAATCACTCTTGTTTCTCCT  550

seq1  TAAACCACAGTATTTACATGTGTACTTTAAATCACTTTATTTAGTAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACAGTATTTACATGTGTACTTTAAATCACTTTATTTAGTAAATG  600

seq1  TACTGAGTACCTACCTCTGGAAAATCAGTGTATGCTCTACTGAAAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTACCTACCTCTGGAAAATCAGTGTATGCTCTACTGAAAAATCA  650

seq1  CCTTGTGTCCCGGAAGTAGTATGAATCGGAGGTGAACCATAGTACTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTCCCGGAAGTAGTATGAATCGGAGGTGAACCATAGTACTCCAC  700

seq1  CCTCATGGGCTCTCAGGACAGCCTGTGCTCAACATAAGTGTAAGCC-TTA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCATGGGCTCTCAGGACAGCCTGTGCTCAACATAAGTGTAAGCCTTTA  750

seq1  TACCCTGTACCATTGCCAATGAGAATACTACAGGGACTTTCTCCTGTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGTACCATTGCCAATGAGAATACTACAGGGACTTTCTCCTGTTTG  800

seq1  CTCGCTCCATCCTAATTCTATCAGC-TCCTCAGTCATAAAGGTGAAAAAC  848
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  CTCGCTCCATCCT-ATTCTATCAGCTTCCTCAGTCATAAAGGTGAAAAAC  849

seq1  TGTGGAATGCTTTAAGTGTAAAGATAACTCACTAATAGGGACACTATGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATGCTTTAAGTGTAAAGATAACTCACTAATAGGGACACTATGAA  899

seq1  GGTGATGTCATGACGATAATCATGAATAAAAGCCCTAACCAAACACACAA  948
       |||||||| |||||||||||||| || |||||||||||| ||||||| |
seq2  AGTGATGTC-TGACGATAATCATG-ATTAAAGCCCTAACC-AACACAC-A  945

seq1  TTTGTAAAAGGGGACTCTTAATTACTACCTTTCAAGAGAGCTACAAAGAC  998
      ||||||||| ||||||||| |||||||||||||| |||||| ||||||| 
seq2  TTTGTAAAA-GGGACTCTT-ATTACTACCTTTCAGGAGAGC-ACAAAGAT  992

seq1  AGTAGTTTCCCATCATCAGGAGGTGGTGTTTACTAG-ACGCAGTTACTAC  1047
        ||||||||||||||||||| |||||||||||||| || ||| ||||| 
seq2  CATAGTTTCCCATCATCAGGAAGTGGTGTTTACTAGAACTCAG-TACTAA  1041

seq1  AACAGACAGCCCATTGACCCAGCTCAACT--CCTTGGTAATAGAGCAGGT  1095
       ||| |||  ||||| ||| ||||  |||  | ||||||||| |  ||| 
seq2  CACAAACAATCCATTAACCAAGCTTCACTTCCTTTGGTAATATAAGAGG-  1090

seq1  GCCTCAGAGGAATTGACTGAGCCAG-AAGAAAAGAAA  1131
      |||||| | |||||||||||||||| |||||||||||
seq2  GCCTCATAAGAATTGACTGAGCCAGAAAGAAAAGAAA  1127