BAC Information

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BAC

Clone NameB6Ng01-019A21
Chromosome1 (Build37)
Map Location 30,971,712 - 31,093,846
singlet/doubletdoublet
Overlap genePtp4a1, EG435615, LOC669402, EG435616
Upstream geneLOC665944, EG624138, LOC100040699, Phf3, EG638995
Downstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019A21.bB6Ng01-019A21.g
ACCDH852259DH852260
length1,090994
definitionDH852259|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A21, 5' end.DH852260|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,092,757 - 31,093,846)(30,971,712 - 30,972,698)
sequence
gaattcttttaaaatgttagaaattgtaggcaaaataccaacattaagtg
tgatacaagcaagtcactcttcagttgttattcatgtggtttcctttgtt
acaagaaaacaaaagagctaagcaggcatgcaatagctaacaacctacag
actcaaggatctgacaaaactaaaactaaggataacagcctggaggaaca
ggcaggcctgttatcccaacaacttggaggctgagggagcaggattccaa
attaaagcctgactgagctacagagtgaatttaagaccaagctggttaac
tcaatgagatcctgtgtttaaagggtaagagagaaagtgaggacagaact
tagtggcagagtgtcatgaggcccggatatagttctctaaaacatcacat
taaaaataaataaataaataaataaataagccttgagggatggaatggag
gaaggccagaggaagacaagagagagaccgaaggagggaagtcgaggagg
cctgacacatgatgagttacacaaattggaccttcactcccatgtgatag
tgcagaatcattggtcaaccagcaataatagtttgcaaagtacttagaag
caatgccctaagctgccttaaatatataattagaagaaaaagatcccaag
gttacagtgacttcttctcaatgaggttgtgttttccacttgttcttact
ggccctaagacaacttttgtcccttcagtatctgctgtaaaatctgaacc
atcccaaggacagcaaggcgagtcccagtgaagttgaaacttgtcacaac
cctcaataagcagaagctgaaaataaagactttaatctgtctaccagtca
gttgtataaccctgtcagtaattctgtgaatccacctatgaaaaagatca
gcaaaagttaaaggtttcattgcacaagtagatacccacatcggtccctt
tgccagcaaggccaggtgaaataagagctccattgtttgcgtaggttgac
ctagcaacttgggaaggtttcttttcactaatttagtagaacaggataga
atagattggagttagttgttttcaagtagaagcacctcaa
gaattcctgcgggattagattctgatgcacttgcacttttctatcagttt
tactttgtgtcaggtaagttcttttttctatcttttcatttttccacccc
atatctgccttctccctttcatagagaatgtaacgatactttctccgaag
caagagatatgatagaaagaattcctttattaaaaacagactgtttgtga
ttcagccatcaatgttttcagtcactgtggtaccaactgaattttatgca
ggaacttggaagacaaagaaaaacttttgtaagttaatgtaggatgagtg
ataaatgttagaaaaaaaaagaagtcagtaagggatccaattctcttacc
taattcttcctatatttatcagtctagaatttcaatttaatgatagcata
gagaaaattggacagtttaagaagacaatgaactgcaaagtgataagata
aagcatattccaacatagtcattttgtgcttcatatactttagacggata
actattatgagttcaaaataaatgagaattcttagctttgaatattcata
tatgaaaatatagtattctggaggctggaaacttttttcttttttatcgt
tttattgagtcattgtgactttcacatcatgctccccaataccactcatc
tccccatcccttcgtatccaccctccacccttgcaacctcttccccaaat
aaaataagatagaaaagaaaatcttgttgtggaagctgtagtgtgtcaca
gtatgtcacccagtacaccctttgtccacattttctttacctgccgatgc
tcattgcaatgagttattggtctgtttcaagggtcttttagcttccagga
cactatctatactggatcttcactgggactttctgtatatcctgttactg
acctgtgtttggaaatcttgcagttttggacctgttgccctttaacatgg
ctttcagaagaattattaaatgggggttgatgttggggtgggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31092757_31093846
seq2: B6Ng01-019A21.b_30_1119 (reverse)

seq1  TTGAAGTGCTTCTACTTGAAAACAACT-ACTTCAATCTATTCTATCCTG-  48
      |||| |||||||||||||||||||||| ||| ||||||||||||||||| 
seq2  TTGAGGTGCTTCTACTTGAAAACAACTAACTCCAATCTATTCTATCCTGT  50

seq1  TCTACTAAATTAGTGAAAAGAAACCCTTCCCAAGTTGCTAGGTCAACCTA  98
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTACTAAATTAGTGAAAAGAAA-CCTTCCCAAGTTGCTAGGTCAACCTA  99

seq1  CGCAAACAATGGAGCTCTTTATTTCACCTGGCCTTGCTGGCAAAGGGACC  148
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CGCAAACAATGGAGCTC-TTATTTCACCTGGCCTTGCTGGCAAAGGGACC  148

seq1  GATGTGGGTATCTACTTGTGCAATGAAACCTTTAACTTTTGCTGATCTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGTATCTACTTGTGCAATGAAACCTTTAACTTTTGCTGATCTTT  198

seq1  TTCATAGGTGGATTCACAGAATTACTGACAGGGTTATACAACTGACTGGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGGTGGATTCACAGAATTACTGACAGGGTTATACAACTGACTGGT  248

seq1  AGACAGATTAAAGTCTTTATTTTCAGCTTCTGCTTATTGAGGGTTGTGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATTAAAGTCTTTATTTTCAGCTTCTGCTTATTGAGGGTTGTGAC  298

seq1  AAGTTTCAACTTCACTGGGACTCGCCTTGCTGTCCTTGGGATGGTTCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAACTTCACTGGGACTCGCCTTGCTGTCCTTGGGATGGTTCAGA  348

seq1  TTTTACAGCAGATACTGAAGGGACAAAAGTTGTCTTAGGGCCAGTAAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGCAGATACTGAAGGGACAAAAGTTGTCTTAGGGCCAGTAAGAA  398

seq1  CAAGTGGAAAACACAACCTCATTGAGAAGAAGTCACTGTAACCTTGGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGAAAACACAACCTCATTGAGAAGAAGTCACTGTAACCTTGGGAT  448

seq1  CTTTTTCTTCTAATTATATATTTAAGGCAGCTTAGGGCATTGCTTCTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTCTAATTATATATTTAAGGCAGCTTAGGGCATTGCTTCTAAG  498

seq1  TACTTTGCAAACTATTATTGCTGGTTGACCAATGATTCTGCACTATCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGCAAACTATTATTGCTGGTTGACCAATGATTCTGCACTATCACA  548

seq1  TGGGAGTGAAGGTCCAATTTGTGTAACTCATCATGTGTCAGGCCTCCTCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGAAGGTCCAATTTGTGTAACTCATCATGTGTCAGGCCTCCTCG  598

seq1  ACTTCCCTCCTTCGGTCTCTCTCTTGTCTTCCTCTGGCCTTCCTCCATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTCCTTCGGTCTCTCTCTTGTCTTCCTCTGGCCTTCCTCCATTC  648

seq1  CATCCCTCAAGGCTTATTTATTTATTTATTTATTTATTTTTAATGTGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCAAGGCTTATTTATTTATTTATTTATTTATTTTTAATGTGATG  698

seq1  TTTTAGAGAACTATATCCGGGCCTCATGACACTCTGCCACTAAGTTCTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGAACTATATCCGGGCCTCATGACACTCTGCCACTAAGTTCTGT  748

seq1  CCTCACTTTCTCTCTTACCCTTTAAACACAGGATCTCATTGAGTTAACCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTTCTCTCTTACCCTTTAAACACAGGATCTCATTGAGTTAACCA  798

seq1  GCTTGGTCTTAAATTCACTCTGTAGCTCAGTCAGGCTTTAATTTGGAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCTTAAATTCACTCTGTAGCTCAGTCAGGCTTTAATTTGGAATC  848

seq1  CTGCTCCCTCAGCCTCCAAGTTGTTGGGATAACAGGCCTGCCTGTTCCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCTCAGCCTCCAAGTTGTTGGGATAACAGGCCTGCCTGTTCCTC  898

seq1  CAGGCTGTTATCCTTAGTTTTAGTTTTGTCAGATCCTTGAGTCTGTAGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTTATCCTTAGTTTTAGTTTTGTCAGATCCTTGAGTCTGTAGGT  948

seq1  TGTTAGCTATTGCATGCCTGCTTAGCTCTTTTGTTTTCTTGTAACAAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCTATTGCATGCCTGCTTAGCTCTTTTGTTTTCTTGTAACAAAGG  998

seq1  AAACCACATGAATAACAACTGAAGAGTGACTTGCTTGTATCACACTTAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACATGAATAACAACTGAAGAGTGACTTGCTTGTATCACACTTAAT  1048

seq1  GTTGGTATTTTGCCTACAATTTCTAACATTTTAAAAGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTATTTTGCCTACAATTTCTAACATTTTAAAAGAATTC  1090

seq1: chr1_30971712_30972698
seq2: B6Ng01-019A21.g_71_1063

seq1  GAATTCCTGCGGGATTAGATTCTGATGCACTTGCACTTTTCTATCAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCGGGATTAGATTCTGATGCACTTGCACTTTTCTATCAGTTT  50

seq1  TACTTTGTGTCAGGTAAGTTCTTTTTTCTATCTTTTCATTTTTCCACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTGTCAGGTAAGTTCTTTTTTCTATCTTTTCATTTTTCCACCCC  100

seq1  ATATCTGCCTTCTCCCTTTCATAGAGAATGTAACGATACTTTCTCCGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCCTTCTCCCTTTCATAGAGAATGTAACGATACTTTCTCCGAAG  150

seq1  CAAGAGATATGATAGAAAGAATTCCTTTATTAAAAACAGACTGTTTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATATGATAGAAAGAATTCCTTTATTAAAAACAGACTGTTTGTGA  200

seq1  TTCAGCCATCAATGTTTTCAGTCACTGTGGTACCAACTGAATTTTATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCATCAATGTTTTCAGTCACTGTGGTACCAACTGAATTTTATGCA  250

seq1  GGAACTTGGAAGACAAAGAAAAACTTTTGTAAGTTAATGTAGGATGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGGAAGACAAAGAAAAACTTTTGTAAGTTAATGTAGGATGAGTG  300

seq1  ATAAATGTTAGAAAAAAAAAGAAGTCAGTAAGGGATCCAATTCTCTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTAGAAAAAAAAAGAAGTCAGTAAGGGATCCAATTCTCTTACC  350

seq1  TAATTCTTCCTATATTTATCAGTCTAGAATTTCAATTTAATGATAGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCCTATATTTATCAGTCTAGAATTTCAATTTAATGATAGCATA  400

seq1  GAGAAAATTGGACAGTTTAAGAAGACAATGAACTGCAAAGTGATAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATTGGACAGTTTAAGAAGACAATGAACTGCAAAGTGATAAGATA  450

seq1  AAGCATATTCCAACATAGTCATTTTGTGCTTCATATACTTTAGACGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATTCCAACATAGTCATTTTGTGCTTCATATACTTTAGACGGATA  500

seq1  ACTATTATGAGTTCAAAATAAATGAGAATTCTTAGCTTTGAATATTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATGAGTTCAAAATAAATGAGAATTCTTAGCTTTGAATATTCATA  550

seq1  TATGAAAATATAGTATTCTGGAGGCTGGAAACTTTTTTCTTTTTTATCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATATAGTATTCTGGAGGCTGGAAACTTTTTTCTTTTTTATCGT  600

seq1  TTTATTGAGTCATTGTGACTTTCACATCATGCTCCCCAATACCACTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAGTCATTGTGACTTTCACATCATGCTCCCCAATACCACTCATC  650

seq1  TCCCCATCCCTTCGTATCCACCCTCCACCCTTGCAACCTCTTCCCCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCCCTTCGTATCCACCCTCCACCCTTGCAACCTCTTCCCCAAAT  700

seq1  AAAATAAGATAGAAAAGAAAATCTTGTTGTGGAAGCTGTAGTGTGTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGATAGAAAAGAAAATCTTGTTGTGGAAGCTGTAGTGTGTCACA  750

seq1  GTATGTCACCCAGTACACCCTTTGTCCACA-TTTCTTTACCTGCCGATGC  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTATGTCACCCAGTACACCCTTTGTCCACATTTTCTTTACCTGCCGATGC  800

seq1  TCATTGCAATGAGTTATTGGTCTGTTTCAA-GGTC-TTTAGCTTCCAGGA  847
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TCATTGCAATGAGTTATTGGTCTGTTTCAAGGGTCTTTTAGCTTCCAGGA  850

seq1  CACTATCTATACTGGATCTTCACTGGGACTTTTCTGTATATCCTGTTACT  897
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACTATCTATACTGGATCTTCACTGGGAC-TTTCTGTATATCCTGTTACT  899

seq1  GACCTGTGTTGTGGAAATCCTGCAGCTTTGGACCTGTGGCCCTTTTACAT  947
      |||||||||| |||||||| ||||| ||||||||||| ||||||| ||||
seq2  GACCTGTGTT-TGGAAATCTTGCAGTTTTGGACCTGTTGCCCTTTAACAT  948

seq1  G--CTTCAGAAGA--TAATAAAT-GGGGTTGATGTTGGGGTGGGC  987
      |   |||||||||  || ||||| |||||||||||||||||||||
seq2  GGCTTTCAGAAGAATTATTAAATGGGGGTTGATGTTGGGGTGGGC  993