BAC Information

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BAC

Clone NameB6Ng01-019E16
Chromosome1 (Build37)
Map Location 136,401,655 - 136,541,829
singlet/doubletdoublet
Overlap geneRabif, 4931440L10Rik, Jarid1b, LOC100042418
Upstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12
Downstream geneSyt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019E16.bB6Ng01-019E16.g
ACCDH852428DH852429
length491132
definitionDH852428|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E16, 5' end.DH852429|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,401,655 - 136,402,151)(136,541,698 - 136,541,829)
sequence
attcagactgtgggtcagaggcttcctgaggttatgtttgcgcaaaatat
caaccaccaagggagcagccatgccttgtgtgcagacagaaccatcttac
agtttgttgaggaagcaaggcagccagtgcggctgatacacatcgaagtg
agggggaactaggccatggcatgctgaggcctctggacagtgaagcggag
aagccagcacctgaagctgaagtacccctctatatctcttaagactcaga
gcaaaccctctggttcgctttcccatcagaccttgctgctgaacttggtg
gtcataaaggaaagagtacactgaagccggcctcacagtgatgtcgtcag
aatagaacatagggccagactcaaacaagcctgaacactgtgtacttact
atctgagagctaagtacatctgttgcatgggaagttgtggcctgttgtag
cagtttgtgtggagttggggagagattataggggagagggg
ttcagaggaaggaagcaagtggccgctcagtggttgtcatgagacaatgg
attgttcttaaaccactctgcagcccacaacagcctccacagaacagtcc
gaaggaagcaactcgggggtgggggtgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136401655_136402151
seq2: B6Ng01-019E16.b_47_543

seq1  GAATTCATTCAGACTGTGGGTCAGAGGCTTCCTGAGGTTATGTTTGCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGACTGTGGGTCAGAGGCTTCCTGAGGTTATGTTTGCGCA  50

seq1  AAATATCAACCACCAAGGGAGCAGCCATGCCTTGTGTGCAGACAGAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAACCACCAAGGGAGCAGCCATGCCTTGTGTGCAGACAGAACCA  100

seq1  TCTTACAGTTTGTTGAGGAAGCAAGGCAGCCAGTGCGGCTGATACACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGTTTGTTGAGGAAGCAAGGCAGCCAGTGCGGCTGATACACATC  150

seq1  GAAGTGAGGGGGAACTAGGCCATGGCATGCTGAGGCCTCTGGACAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGGGGAACTAGGCCATGGCATGCTGAGGCCTCTGGACAGTGAA  200

seq1  GCGGAGAAGCCAGCACCTGAAGCTGAAGTACCCCTCTATATCTCTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGAAGCCAGCACCTGAAGCTGAAGTACCCCTCTATATCTCTTAAGA  250

seq1  CTCAGAGCAAACCCTCTGGTTCGCTTTCCCATCAGACCTTGCTGCTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCAAACCCTCTGGTTCGCTTTCCCATCAGACCTTGCTGCTGAAC  300

seq1  TTGGTGGTCATAAAGGAAAGAGTACACTGAAGCCGGCCTCACAGTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTCATAAAGGAAAGAGTACACTGAAGCCGGCCTCACAGTGATGT  350

seq1  CGTCAGAATAGAACATAGGGCCAGACTCAAACAAGCCTGAACACTGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGAATAGAACATAGGGCCAGACTCAAACAAGCCTGAACACTGTGTA  400

seq1  CTTACTATCTGAGAGCTAAGTACATCTGTTGCATGGGAAGTTGTGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTATCTGAGAGCTAAGTACATCTGTTGCATGGGAAGTTGTGGCCTG  450

seq1  TTGTAGCAGTTTGTGTGGAGTTGGGGAGAGATTATAGGGGAGAGGGG  497
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCAGTTTGTGTGGAGTTGGGGAGAGATTATAGGGGAGAGGGG  497

seq1: chr1_136541698_136541829
seq2: B6Ng01-019E16.g_73_204 (reverse)

seq1  ACCCCCACCCCCACCCCCGAGTTGCTTCCTTCGGACTGTTCTGTGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACCCCCACCCCCGAGTTGCTTCCTTCGGACTGTTCTGTGGAGGC  50

seq1  TGTTGTGGGCTGCAGAGTGGTTTAAGAACAATCCATTGTCTCATGACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGGCTGCAGAGTGGTTTAAGAACAATCCATTGTCTCATGACAAC  100

seq1  CACTGAGCGGCCACTTGCTTCCTTCCTCTGAA  132
      ||||||||||||||||||||||||||||||||
seq2  CACTGAGCGGCCACTTGCTTCCTTCCTCTGAA  132