BAC Information

Click to search

BAC

Clone NameB6Ng01-019I13
Chromosome1 (Build37)
Map Location 75,410,438 - 75,498,266
singlet/doubletdoublet
Overlap geneSpeg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216
Upstream geneGm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des
Downstream geneInha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019I13.bB6Ng01-019I13.g
ACCDH852592DH852593
length962663
definitionDH852592|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I13, 5' end.DH852593|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,497,294 - 75,498,266)(75,410,438 - 75,411,100)
sequence
gaattcaactcaatactaccaaaaaaataattatacttgtcctctcattt
aaaagacatggatcctggctatagcccctgtctgctttctgtcctcttgt
ccaattgcctaatgaaaccttatctcctagcagttcaccttgaaccaggc
acagccctaatcacttgatttaggtagttagcacagtcctgccgatagcc
tcatagaacaagttcttagtcatttcccactgtacgtggaggaagacagg
cacagagaagttaaatggcctgctcagagttacaaagatggtgctggatt
gcgaatccgagttgtttacccccatacttccttcttagcaaggaagggga
gtggatgtaacatccatcactcaggctggggaagtgggtgctgaaaattc
agaggccatcctagcactcagttctctcgctattgctagagaacctgggg
tcttaacagtggtagcttccagcagcagcggtagagagcaaaggcagaaa
tcatcaagtgcagcatttccaagtttaactaaagaccactatcaccagag
gcaccaggagagacaggcccttttttgttgttgttgttgttttgggtttt
tggttttttctagacagagtttctctgtgtagccctggctatcctggaac
tcactctgtagaccaggctggcctcgaactcagaaatccacctgcctctg
cctcccaagtgctgggattaaaggctgtgccaccactgcccggcacagag
acgggctctttaataattcttaaatacagtaaaaccactactctgctact
ctgcttagtggcctaaaaatctgacctaacctcttttctgttgcttacag
agaagctgatgctgggtattttataatgaaaaaaaattatttagctcaca
gtctggaaattccaagttgtcttccaattttaatgacatgttcatcttta
gtgacccaaccc
gaattctaggtcacagccccagcttcctcctgcggggggccaagtacagg
cactctgaggccagcaggtggggtgttgagaagagcagtcacccataggg
ggcagctctgagccacactgcacctgcctcatggttactgcagaaaagag
gggctgaagagtcagactagagagataggacatgcaggcttcttttgtgt
atgaaaatgtcttaatttcaaagccatcacacgaatcctaagggtcgcac
aaagccacctgtaccagtgaccagtaccttgttaggatttacagtgagag
ccaagccaggaactctggtgtcctcaggcgaggggggagctggaaaggaa
gggctggtgttctcaccatccagttgctgataaggacaggacttgaggag
gcaggcccctgtggtgacgacatctggtcctctcccgtccctgtttgttg
cagaggcacctcggtttgagtctatcatggaagatgtggaggtggggcct
ggagaaaccgctcgctttgctgtggtagttgaggggaaaccactgccaga
catcatgtggtacaaggtcagtgggtaatgcaggctgcagtatcctggga
gctgggggtttgtggagtcctagaaggcccccatgggcatagttactagg
aggaggaagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75497294_75498266
seq2: B6Ng01-019I13.b_40_1001 (reverse)

seq1  GGGTAGGGTCACTAAAGACTGGACAGTGTCATTAAAGACTGGGAAGACCA  50
      |||| ||||||||||||| || ||| |||||||||  | | |||||| ||
seq2  GGGTTGGGTCACTAAAGA-TGAACA-TGTCATTAA--AATTGGAAGA-CA  45

seq1  ACTTTGGAGTTTCCAGAACTGTGAGCTAAACTAATTTTTTTTTCTTTATA  100
      || ||||| ||||||| ||||||||||||| ||| ||||||||| |||||
seq2  AC-TTGGAATTTCCAG-ACTGTGAGCTAAA-TAA-TTTTTTTTCATTATA  91

seq1  AAATACCCAGCATCAGCTTCTCTGTTATAGCAACAGAAAAGAGGTTAGGT  150
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  AAATACCCAGCATCAGCTTCTCTGT--AAGCAACAGAAAAGAGGTTAGGT  139

seq1  CAGATTTTTAGGCCACTTAAGCAGAGTAGCAGAGTAGTGGTTTTACTGTA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGATTTTTAGGCCAC-TAAGCAGAGTAGCAGAGTAGTGGTTTTACTGTA  188

seq1  TTTAAGAATTCTTAAAGAGCCCGTCTCTGTGCCGGGCAGTGGTGGCACAT  250
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TTTAAGAATTATTAAAGAGCCCGTCTCTGTGCCGGGCAGTGGTGGCACA-  237

seq1  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTC  287

seq1  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACA  337

seq1  GAGAAACTCTGTCTAGAAAAA--CCAAAACCCAAAACAACAACAACAACA  398
      |||||||||||||||||||||  | |||||||||||||||||||||||||
seq2  GAGAAACTCTGTCTAGAAAAAACCAAAAACCCAAAACAACAACAACAACA  387

seq1  AAAAAGGGCCTGTCTCTCCTGGTGCCTCTGGTGATAGTGGTCTTTAGTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGCCTGTCTCTCCTGGTGCCTCTGGTGATAGTGGTCTTTAGTTA  437

seq1  AACTTGGAAATGCTGCACTTGATGATTTCTGCCTTTGCTCTCTACCGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAAATGCTGCACTTGATGATTTCTGCCTTTGCTCTCTACCGCTG  487

seq1  CTGCTGGAAGCTACCACTGTTAAGACCCCAGGTTCTCTAGCAATAGCGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAAGCTACCACTGTTAAGACCCCAGGTTCTCTAGCAATAGCGAG  537

seq1  AGAACTGAGTGCTAGGATGGCCTCTGAATTTTCAGCACCCACTTCCCCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGTGCTAGGATGGCCTCTGAATTTTCAGCACCCACTTCCCCAG  587

seq1  CCTGAGTGATGGATGTTACATCCACTCCCCTTCCTTGCTAAGAAGGAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGATGGATGTTACATCCACTCCCCTTCCTTGCTAAGAAGGAAGT  637

seq1  ATGGGGGTAAACAACTCGGATTCGCAATCCAGCACCATCTTTGTAACTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGTAAACAACTCGGATTCGCAATCCAGCACCATCTTTGTAACTCT  687

seq1  GAGCAGGCCATTTAACTTCTCTGTGCCTGTCTTCCTCCACGTACAGTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGCCATTTAACTTCTCTGTGCCTGTCTTCCTCCACGTACAGTGGG  737

seq1  AAATGACTAAGAACTTGTTCTATGAGGCTATCGGCAGGACTGTGCTAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTAAGAACTTGTTCTATGAGGCTATCGGCAGGACTGTGCTAACT  787

seq1  ACCTAAATCAAGTGATTAGGGCTGTGCCTGGTTCAAGGTGAACTGCTAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATCAAGTGATTAGGGCTGTGCCTGGTTCAAGGTGAACTGCTAGG  837

seq1  AGATAAGGTTTCATTAGGCAATTGGACAAGAGGACAGAAAGCAGACAGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGTTTCATTAGGCAATTGGACAAGAGGACAGAAAGCAGACAGGG  887

seq1  GCTATAGCCAGGATCCATGTCTTTTAAATGAGAGGACAAGTATAATTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCCAGGATCCATGTCTTTTAAATGAGAGGACAAGTATAATTATT  937

seq1  TTTTTGGTAGTATTGAGTTGAATTC  973
      |||||||||||||||||||||||||
seq2  TTTTTGGTAGTATTGAGTTGAATTC  962

seq1: chr1_75410438_75411100
seq2: B6Ng01-019I13.g_71_733

seq1  GAATTCTAGGTCACAGCCCCAGCTTCCTCCTGCGGGGGGCCAAGTACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTCACAGCCCCAGCTTCCTCCTGCGGGGGGCCAAGTACAGG  50

seq1  CACTCTGAGGCCAGCAGGTGGGGTGTTGAGAAGAGCAGTCACCCATAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGAGGCCAGCAGGTGGGGTGTTGAGAAGAGCAGTCACCCATAGGG  100

seq1  GGCAGCTCTGAGCCACACTGCACCTGCCTCATGGTTACTGCAGAAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCTGAGCCACACTGCACCTGCCTCATGGTTACTGCAGAAAAGAG  150

seq1  GGGCTGAAGAGTCAGACTAGAGAGATAGGACATGCAGGCTTCTTTTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAAGAGTCAGACTAGAGAGATAGGACATGCAGGCTTCTTTTGTGT  200

seq1  ATGAAAATGTCTTAATTTCAAAGCCATCACACGAATCCTAAGGGTCGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGTCTTAATTTCAAAGCCATCACACGAATCCTAAGGGTCGCAC  250

seq1  AAAGCCACCTGTACCAGTGACCAGTACCTTGTTAGGATTTACAGTGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACCTGTACCAGTGACCAGTACCTTGTTAGGATTTACAGTGAGAG  300

seq1  CCAAGCCAGGAACTCTGGTGTCCTCAGGCGAGGGGGGAGCTGGAAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAGGAACTCTGGTGTCCTCAGGCGAGGGGGGAGCTGGAAAGGAA  350

seq1  GGGCTGGTGTTCTCACCATCCAGTTGCTGATAAGGACAGGACTTGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTGTTCTCACCATCCAGTTGCTGATAAGGACAGGACTTGAGGAG  400

seq1  GCAGGCCCCTGTGGTGACGACATCTGGTCCTCTCCCGTCCCTGTTTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCCCTGTGGTGACGACATCTGGTCCTCTCCCGTCCCTGTTTGTTG  450

seq1  CAGAGGCACCTCGGTTTGAGTCTATCATGGAAGATGTGGAGGTGGGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCACCTCGGTTTGAGTCTATCATGGAAGATGTGGAGGTGGGGCCT  500

seq1  GGAGAAACCGCTCGCTTTGCTGTGGTAGTTGAGGGGAAACCACTGCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCGCTCGCTTTGCTGTGGTAGTTGAGGGGAAACCACTGCCAGA  550

seq1  CATCATGTGGTACAAGGTCAGTGGGTAATGCAGGCTGCAGTAGCCTGGGA  600
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATCATGTGGTACAAGGTCAGTGGGTAATGCAGGCTGCAGTATCCTGGGA  600

seq1  GCTGGGGGTTTGTGGAGTCCTAGAAGGCCCCCAGGGGCATAGTTACAAGG  650
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  GCTGGGGGTTTGTGGAGTCCTAGAAGGCCCCCATGGGCATAGTTACTAGG  650

seq1  AGGAGGAAGAGGA  663
      |||||||||||||
seq2  AGGAGGAAGAGGA  663