BAC Information

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BAC

Clone NameB6Ng01-019K17
Chromosome1 (Build37)
Map Location 28,544,406 - 28,699,113
singlet/doubletdoublet
Overlap geneEG665903
Upstream geneLOC100040952, EG433281
Downstream geneGm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019K17.bB6Ng01-019K17.g
ACCDH852694DH852695
length9721,176
definitionDH852694|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K17, 5' end.DH852695|Mus musculus domesticus DNA, BAC clone: B6Ng01-019K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,544,406 - 28,545,225)(28,697,919 - 28,699,113)
sequence
gaattccacacccctaatccccttaccccataaaaactcctagttttcga
gcctcgtggctgacatccattatctcctgtgtgggatgcatgtcagtccg
gagctctgtcatttaacgacctcatgtaattacatctagatggtccttca
tgattttctgggtgcacgctgaatcgggaattgagttggggtttccccac
taggttctatcagtggaggacactagaagaacaagacctgttttatctat
taaacagagctcttatgggctcacagagcccaaaattataagcacaggaa
ctacaaggccctgtaccatgtcctctttgtatactttgtcactaacatgc
ttggtggttttgtggaactctcaagagtgggatcaagtgtgtctctgaca
cctttgcttgctcttgggactctttcttctactggattggtttttctttt
tcagccttgacatgagagcatttctttttcttactgtatcttcttttgct
gtgcttggttgttgtctcttggaggcttcctttttcctgaaggaaaacag
agagggaatgaagggaagaagaaaggtgaagatattgggaggattggaga
aagtggaaactgtccacggtgtattgtatgagaaaagaatctattttcaa
tatgaatgaattaatagattataagaatctgtgtatctggtcagctgtgg
ctgtggaagcagcccttataagctcgagagagcagcaccactgaaagcta
agcaacttgtgctcattctgagaatctagcattatgaagggtgccaccaa
agaaaagaagccctttcaaacacagctgggctgatttgcatgaatcagag
gtcatggcagcatacacacagagctcaggggctgagagtagaggtggact
caagactctactgcttatccagatgctacctctgaccatactcatatgca
aatgaaaactagtattcataaa
gaattctacagtcagaaaatgaatttcaaattgagaatgaatcagtttat
attaatatactatactattttaatttaaatataagttttaaaatgagtat
tataaactgtagatattctatattttgaggatacaaaataagttttgatt
ttaaaaccataagctaatgcttgcaacactatctataaagagactcattt
ttcataggatgacaggaggaaatagaagaccgctgctcattttatagctc
agcaagtttctaagtagtacatgtattcatatatttcattggattctttt
atacacagcttgtttaaaacttctgagatgcagtaatctgtatgtatcaa
ttggcatccttcatggaacaacctttttatcacaaataatgtgaccctct
taaataatgatgaattttaaactcagcttcttattcacatatatatcata
aaatatacactttacttttacttactaatgaagtctgtaaacaatataaa
tcaccattaaattacagttcagagacatatttgccttaatatgtaagaca
ttgctactttttgatatttggcattatcaacaccattattcaatcacaca
ttttgaccaaatatatattgatatcatttatgcttttattttatcttgtc
accctttcttttttacaaagcaatatttattagaaatgcattggtctttt
agttatctctagtcccatttatatacattgaattatcctttttaatatgt
cagtataaattttaattagttatatataatatatatgcatatatatgcaa
atgtatatatacacatatattatgtcaagtacataaatcatgtatacact
caaatttatgtaagatcataagacaacacatttgctcgctaagttttact
ataagtatgtaaaattactggctttcaaaatccatcccttaaagtaacga
atgcagcaggccatgctattgtgatgcttactataattttttaataacaa
agttgttgacaaaatgagtgtctccaatgaccacaccttctaattgccgc
aactaacttgtgttctttgtgtgtccatttaccttattagtcattttgtg
ttcttaggaagctctggtaagccaagaaatactcgaatacaaagcctcac
atcttgtgtgccagccatcctccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28544406_28545225
seq2: B6Ng01-019K17.b_196_1013

seq1  TTTCTGGGTGCACGCTGAATCGGGAATTGAGTTGGGGTTTCCCCACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTGCACGCTGAATCGGGAATTGAGTTGGGGTTTCCCCACTAGG  50

seq1  TTCTATCAGTGGAGGACACTAGAAGAACAAGACCTGTTTTATCTATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCAGTGGAGGACACTAGAAGAACAAGACCTGTTTTATCTATTAAA  100

seq1  CAGAGCTCTTATGGGCTCACAGAGCCCAAAATTATAAGCACAGGAACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTTATGGGCTCACAGAGCCCAAAATTATAAGCACAGGAACTAC  150

seq1  AAGGCCCTGTACCATGTCCTCTTTGTATACTTTGTCACTAACATGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTGTACCATGTCCTCTTTGTATACTTTGTCACTAACATGCTTGG  200

seq1  TGGTTTTGTGGAACTCTCAAGAGTGGGATCAAGTGTGTCTCTGACACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTGGAACTCTCAAGAGTGGGATCAAGTGTGTCTCTGACACCTT  250

seq1  TGCTTGCTCTTGGGACTCTTTCTTCTACTGGATTGGTTTTTCTTTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCTTGGGACTCTTTCTTCTACTGGATTGGTTTTTCTTTTTCAG  300

seq1  CCTTGACATGAGAGCATTTCTTTTTCTTACTGTATCTTCTTTTGCTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACATGAGAGCATTTCTTTTTCTTACTGTATCTTCTTTTGCTGTGC  350

seq1  TTGGTTGTTGTCTCTTGGAGGCTTCCTTTTTCCTGAAGGAAAACAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTGTCTCTTGGAGGCTTCCTTTTTCCTGAAGGAAAACAGAGAG  400

seq1  GGAATGAAGGGAAGAAGAAAGGTGAAGATATTGGGAGGATTGGAGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAGGGAAGAAGAAAGGTGAAGATATTGGGAGGATTGGAGAAAGT  450

seq1  GGAAACTGTCCACGGTGTATTGTATGAGAAAAGAATCTATTTTCAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGTCCACGGTGTATTGTATGAGAAAAGAATCTATTTTCAATATG  500

seq1  AATGAATTAATAGATTATAAGAATCTGTGTATCTGGTCAGCTGTGGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTAATAGATTATAAGAATCTGTGTATCTGGTCAGCTGTGGCTGT  550

seq1  GGAAGCAGCCCTTATAAGCTCGAGAGAGCAGCACCACTG-AAGCTAAGCA  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAAGCAGCCCTTATAAGCTCGAGAGAGCAGCACCACTGAAAGCTAAGCA  600

seq1  ACTTGTGCTCATTCTGAGAATCTAGCAATTATGAA-GGTGCCACCAAAG-  647
      |||||||||||||||||||||||||| |||||||| ||||||||||||| 
seq2  ACTTGTGCTCATTCTGAGAATCTAGC-ATTATGAAGGGTGCCACCAAAGA  649

seq1  AAAGAAGCCCTTCCAAACACAGCTGGGCTGATTTGCATGAATCAGAGGTC  697
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCCTTTCAAACACAGCTGGGCTGATTTGCATGAATCAGAGGTC  699

seq1  ATGGCAGCATACACACAGAGTCCCAGGGCTGAGAGTAGAGGTGGACTCAA  747
      ||||||||||||||||||||  |  |||||||||||||||||||||||||
seq2  ATGGCAGCATACACACAGAGCTCAGGGGCTGAGAGTAGAGGTGGACTCAA  749

seq1  GACCCTACTGCTAACCCAGAGGCTACCTCTGACCAATAACCCACATGCAA  797
      ||| |||||||| | ||||| ||||||||||||||   || || ||||||
seq2  GACTCTACTGCTTATCCAGATGCTACCTCTGACCA--TACTCATATGCAA  797

seq1  ATGAAAACTTAGTATTCACTAAA  820
      |||||||| ||||||||| ||||
seq2  ATGAAAAC-TAGTATTCA-TAAA  818

seq1: chr1_28697919_28699113
seq2: B6Ng01-019K17.g_72_1247 (reverse)

seq1  TGTGAAGGATGCTGGGCACACAAGA-GTGCGGCTGTCTGATTCAAGTAAA  49
      |||| ||||||   ||||||||||| ||| |||| | | |||| ||||  
seq2  TGTGGAGGATGGCTGGCACACAAGATGTGAGGCTTTGT-ATTCGAGTA--  47

seq1  TATTGTTGGCTCTTACCAG-GCTTCCTAGTGAAGACACAAATTAACTAAA  98
        || ||||  |||||||| ||||||||   |  ||||||| | ||||| 
seq2  -TTTCTTGG--CTTACCAGAGCTTCCTA---AGAACACAAAATGACTAA-  90

seq1  TGAAGATAAAATTGGACATGCAAATGAAACACAGTTAGTGTGCGGCAAAT  148
        ||| ||||  ||||||  ||||  | ||| ||||||| |||||||| |
seq2  -TAAGGTAAA--TGGACACACAAAGAACACA-AGTTAGT-TGCGGCAATT  135

seq1  AGATTGCTGTGGTTCACTTGTGAGCACTCATTTTGTCAACAACTTTGCTA  198
      |||  | ||||| ||| | | || ||||||||||||||||||||||| ||
seq2  AGA-AGGTGTGG-TCATTGGAGA-CACTCATTTTGTCAACAACTTTGTTA  182

seq1  TTTAAAAAATTATACGTAAGCATCAACAATAGCATGGTCATGCTGCATTC  248
       ||||||||||||| ||||||||| |||||||||||| | ||||||||||
seq2  -TTAAAAAATTATA-GTAAGCATC-ACAATAGCATGG-CCTGCTGCATTC  228

seq1  GTTACTTTAAGGGATGGATTTTGAAAGCCAGTAATTTTACAATACTTATA  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTACTTTAAGGGATGGATTTTGAAAGCCAGTAATTTTAC-ATACTTATA  277

seq1  GTAAAACTTAGCGAGCAAATGTGTTGTCCTTATGATCTTACATAATTTTT  348
      ||||||||||||||||||||||||||| |||||||||||||||||  |||
seq2  GTAAAACTTAGCGAGCAAATGTGTTGT-CTTATGATCTTACATAA-ATTT  325

seq1  GAGTGTATACATGATTTATGTACTTGACAT-ATATATGTGTATATATACA  397
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGTGTATACATGATTTATGTACTTGACATAATATATGTGTATATATACA  375

seq1  TTTGCATATATATGCATATATATTATATATAACTAATTAAA--TTATACT  445
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TTTGCATATATATGCATATATATTATATATAACTAATTAAAATTTATACT  425

seq1  GACATATT-AAAAGGATAATTCAATGTATATAAATGGGACTAGAGATAAC  494
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTAAAAAGGATAATTCAATGTATATAAATGGGACTAGAGATAAC  475

seq1  TAAAAGACCAATGCATTTCTAATAAATATTGCTTTGTAAAAAAGAAAGGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACCAATGCATTTCTAATAAATATTGCTTTGTAAAAAAGAAAGGG  525

seq1  TGACAAGATAAAATAAAAGCATAAATGATATCAATATATATTTGGTCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGATAAAATAAAAGCATAAATGATATCAATATATATTTGGTCAAA  575

seq1  ATGTGTGATTGAATAATGGTGTTGATAATGCCAAATATCAAAAAGTAGCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGATTGAATAATGGTGTTGATAATGCCAAATATCAAAAAGTAGCA  625

seq1  ATGTCTTACATATTAAGGCAAATATGTCTCTGAACTGTAATTTAATGGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTACATATTAAGGCAAATATGTCTCTGAACTGTAATTTAATGGTG  675

seq1  ATTTATATTGTTTACAGACTTCATTAGTAAGTAAAAGTAAAGTGTATATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTGTTTACAGACTTCATTAGTAAGTAAAAGTAAAGTGTATATT  725

seq1  TTATGATATATATGTGAATAAGAAGCTGAGTTTAAAATTCATCATTATTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATATATATGTGAATAAGAAGCTGAGTTTAAAATTCATCATTATTT  775

seq1  AAGAGGGTCACATTATTTGTGATAAAAAGGTTGTTCCATGAAGGATGCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTCACATTATTTGTGATAAAAAGGTTGTTCCATGAAGGATGCCA  825

seq1  ATTGATACATACAGATTACTGCATCTCAGAAGTTTTAAACAAGCTGTGTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATACATACAGATTACTGCATCTCAGAAGTTTTAAACAAGCTGTGTA  875

seq1  TAAAAGAATCCAATGAAATATATGAATACATGTACTACTTAGAAACTTGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATCCAATGAAATATATGAATACATGTACTACTTAGAAACTTGC  925

seq1  TGAGCTATAAAATGAGCAGCGGTCTTCTATTTCCTCCTGTCATCCTATGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATAAAATGAGCAGCGGTCTTCTATTTCCTCCTGTCATCCTATGA  975

seq1  AAAATGAGTCTCTTTATAGATAGTGTTGCAAGCATTAGCTTATGGTTTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGTCTCTTTATAGATAGTGTTGCAAGCATTAGCTTATGGTTTTA  1025

seq1  AAATCAAAACTTATTTTGTATCCTCAAAATATAGAATATCTACAGTTTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAACTTATTTTGTATCCTCAAAATATAGAATATCTACAGTTTAT  1075

seq1  AATACTCATTTTAAAACTTATATTTAAATTAAAATAGTATAGTATATTAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCATTTTAAAACTTATATTTAAATTAAAATAGTATAGTATATTAA  1125

seq1  TATAAACTGATTCATTCTCAATTTGAAATTCATTTTCTGACTGTAGAATT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTGATTCATTCTCAATTTGAAATTCATTTTCTGACTGTAGAATT  1175

seq1  C  1195
      |
seq2  C  1176