BAC Information

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BAC

Clone NameB6Ng01-019M13
Chromosome1 (Build37)
Map Location 11,597,649 - 11,598,736
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneCpa6, LOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M13.bB6Ng01-019M13.g
ACCDH852772DH852773
length8171,074
definitionDH852772|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M13, 5' end.DH852773|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccagaagctggaaagaacccagatgcccctcaacagaggaat
ggatacagaaaatgtggtacatctacacaatggagtactactcagctatt
aaaaagaatgaatttatgaaattcctagccaaatggatggacctggaggg
catcatcctgagtgaggtaacacattcacaaaagaactcacacaatatgt
actcactgataagtggatattagcccaaaacctaggatacccaagatata
agatacaatttcctaaacacatgaaactcaagaaaattgaagactgaagt
gtggacactatgcccctccttagaagtgggaacaaaacacccttggaagg
agttacagagacaaagtttggagctgagatgaaaggatggaccatgtaga
gactgccatatccagggatcccccccataatcagcatccaaacgctgaca
ccattgcatacactagcaagattttatcgaaaggacccagatgtagctgt
ctcttgtgagactatgccggggcctagcaaacacagaagtggatgctcac
agtcagctaatggatggatcacagggctcccaatggaggagctagagaaa
gtacccaaggagctaaagggatctgcaatcctataggtggaacaacatta
tgaactaaccagtaccccggagctcttgactctagctgcatatgtatcaa
aagatggcctagtcggccatcactggaaagagaggcccattggacacgca
aattttatatgctccagtacaggggaacgccagggccaaaaagggggagt
gggtgggtaaggggatt

gaattcttttctgagtaaaaagacacataatgattaaaattcatgaatac
aggtaaaagcacactgacaggaatagcaaggggagacagtacagctgtat
tccaggctaagcaaacacaaacggcaccatagtagaagttatcagagata
gagaagaagatttaaaaataataaaaggttggcacttcaaaaagataaaa
tagtccttagtatttgtgtaccccacaaaccagcattaagatgtgcaagg
tgcagaggcactcgcattgcctctgcttctgtgctgaagaagctcctggt
gatggcagtatagatggctcctgcactccagccaggggctacactgccat
cctgggcaactttgccaaggctacctttgatgacatctccatgacctaca
gctgcctgacccctgacctctgggaagagaccgttcaccaagtctcctta
tcaggaattcactggtcatcttgtgaaaacccacaccagatctgttcaga
caacccaggctccaactttgacgaccacataagctttttatacaagaaaa
atatagtgaattaatcctgttaagtaaataaataattgcctccatatcat
tatttggaaactgaagtgggcatagaaaagcctggacagttaatacctag
ttatcaaagacaggatgatattgtccaaagtagagcaaagaagaaaacca
gacagcttccaaaaaagcttgcatataagaatcaaagatgttgccgggca
tggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcaga
tttctgagttcgaggccagcctggtctacaaagtgagttccaggacagcc
agggctatacagagaaacctgtctcaaaaaactaaactataactaatact
ataacaaacaaaaacaacaacaaagatcaagatgttatactactgttgtt
tcagagcagatagactttggagcatgtcttcatttcattgctcagttcaa
aggggtgtatcgtctgtcttcaaggggatgtgtgccttcctccaatttct
tgtcttcatcatgataatttataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_11597649_11598736
seq2: B6Ng01-019M13.g_68_1141 (reverse)

seq1  TTATAAATAATCATGATAGAAGACAAGAAAATGGAGGAAGGCACA-ATCA  49
      |||||||| |||||||| |||||||||||| |||||||||||||| ||| 
seq2  TTATAAATTATCATGAT-GAAGACAAGAAATTGGAGGAAGGCACACATC-  48

seq1  CCTTTGAAGACAGACGAT-CAACCCTTTGGACTGAGCAAACTGAAATGAA  98
      || ||||||||||||||| || ||||||| |||||||||  |||||||||
seq2  CCCTTGAAGACAGACGATACACCCCTTTGAACTGAGCAA--TGAAATGAA  96

seq1  GACATGCTCCAAAGTCTATCTGCTCTTGAAACAACAGTTAGTAATAACAT  148
      ||||||||||||||||||||||||| ||||||||||| |||| |||||||
seq2  GACATGCTCCAAAGTCTATCTGCTC-TGAAACAACAG-TAGT-ATAACAT  143

seq1  CTTTGATTCTTTTGTTTGTTTGTTTTTTGTTTGTTTTTGTTTTTGTTTTT  198
      | |||| |||||   |||||   |||||||||||| | || || ||| | 
seq2  C-TTGA-TCTTT--GTTGTT--GTTTTTGTTTGTTATAGTATTAGTTATA  187

seq1  GTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  248
      |  |||  |||||||||||| |||||||||||||||||||||||||||||
seq2  G--TTTAGTTTTTTGAGACA-GGTTTCTCTGTATAGCCCTGGCTGTCCTG  234

seq1  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCC  284

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCGGCAA  334

seq1  CATCTTTGATTCTTATATGCAAGCTTTTTTGGAAGCTGTCTGGTTTTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGATTCTTATATGCAAGCTTTTTTGGAAGCTGTCTGGTTTTCTT  384

seq1  CTTTGCTCTACTTTGGACAATATCATCCTGTCTTTGATAACTAGGTATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCTACTTTGGACAATATCATCCTGTCTTTGATAACTAGGTATTA  434

seq1  ACTGTCCAGGCTTTTCTATGCCCACTTCAGTTTCCAAATAATGATATGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAGGCTTTTCTATGCCCACTTCAGTTTCCAAATAATGATATGGA  484

seq1  GGCAATTATTTATTTACTTAACAGGATTAATTCACTATATTTTTCTTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTATTTATTTACTTAACAGGATTAATTCACTATATTTTTCTTGTA  534

seq1  TAAAAAGCTTATGTGGTCGTCAAAGTTGGAGCCTGGGTTGTCTGAACAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTTATGTGGTCGTCAAAGTTGGAGCCTGGGTTGTCTGAACAGA  584

seq1  TCTGGTGTGGGTTTTCACAAGATGACCAGTGAATTCCTGATAAGGAGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTGGGTTTTCACAAGATGACCAGTGAATTCCTGATAAGGAGACT  634

seq1  TGGTGAACGGTCTCTTCCCAGAGGTCAGGGGTCAGGCAGCTGTAGGTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACGGTCTCTTCCCAGAGGTCAGGGGTCAGGCAGCTGTAGGTCAT  684

seq1  GGAGATGTCATCAAAGGTAGCCTTGGCAAAGTTGCCCAGGATGGCAGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTCATCAAAGGTAGCCTTGGCAAAGTTGCCCAGGATGGCAGTGT  734

seq1  AGCCCCTGGCTGGAGTGCAGGAGCCATCTATACTGCCATCACCAGGAGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGGCTGGAGTGCAGGAGCCATCTATACTGCCATCACCAGGAGCT  784

seq1  TCTTCAGCACAGAAGCAGAGGCAATGCGAGTGCCTCTGCACCTTGCACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCACAGAAGCAGAGGCAATGCGAGTGCCTCTGCACCTTGCACAT  834

seq1  CTTAATGCTGGTTTGTGGGGTACACAAATACTAAGGACTATTTTATCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGCTGGTTTGTGGGGTACACAAATACTAAGGACTATTTTATCTTT  884

seq1  TTGAAGTGCCAACCTTTTATTATTTTTAAATCTTCTTCTCTATCTCTGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGCCAACCTTTTATTATTTTTAAATCTTCTTCTCTATCTCTGAT  934

seq1  AACTTCTACTATGGTGCCGTTTGTGTTTGCTTAGCCTGGAATACAGCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACTATGGTGCCGTTTGTGTTTGCTTAGCCTGGAATACAGCTGT  984

seq1  ACTGTCTCCCCTTGCTATTCCTGTCAGTGTGCTTTTACCTGTATTCATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCCCCTTGCTATTCCTGTCAGTGTGCTTTTACCTGTATTCATGA  1034

seq1  ATTTTAATCATTATGTGTCTTTTTACTCAGAAAAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATCATTATGTGTCTTTTTACTCAGAAAAGAATTC  1074


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