BAC Information

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BAC

Clone NameB6Ng01-020F21
Chromosome10 (Build37)1 (Build37)
Map Location 112,968,826 - 112,969,99461,720,388 - 61,720,955
singlet/doubletsingletsinglet
Overlap geneLOC100042655
Upstream geneLOC100042639, 4921506J03Rik
Downstream geneLOC100042666, Trhde
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020F21.bB6Ng01-020F21.g
ACCDH853187DH853188
length1,158860
definitionDH853187|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F21, 5' end.DH853188|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,968,826 - 112,969,994)(61,720,388 - 61,720,955)
sequence
gaattctaaaaggaaagtttggtttcttactctctctcttttcccaaatg
agcatccttgcattaagaactctgttagggcatgctcaaagctaaatatc
agttcgatgtcacattgtggatggacctacttgattaaacagttctttat
ccagtaaagcctttctgggtctaaatggacaatcctcaatggtattccat
tttctgtgacccactcctgctacacagaatctctgcctacttttttccat
taagcatcaactgacataaatccataaagaaacttctttccaaaatgcat
catctgtgatctgtaaattttattctttaattcgtgagacaggaacacta
ataccaatgacagtgatattctgtaggagtgtgtgtgtccagaaccctga
tgccaaagttaaagtcctgacattcttaaaacctctattgaaatcaagga
cacttcacttgtcctgaattgttttgatgtattattgaagttgtaattgc
tatgaaagtttgatcttggctgttatgatatcatcatgattccttctgtt
tctatggtaactcttactttgtaaactctattatctttctttcttttctc
tctggtttatttttccagatgatctcaaccatcatctatataacaacagg
aatctgtcactaaatgggaatggttatagatgctcttcattaagaacttt
tggaactttatgcctgtggatcatatgatatcagtgactcccaagtacca
aagtagtaaggatatttatataactcccaaaagatctcattacaagtcat
tcggtattagtctcaaaatattctcaaaagttttctattaaaatttgtaa
taactcttcttcaacaggcactgacatccaaattaggatgtaggacaaga
cttctaactttactatttaagtctacatgcttaacacatgcacatgtaaa
acatttccttcaacatgcttttgttcaaatgactctactactcgaaataa
taaaaatcctttaatggctaaagtgcattttctccttataaataatacca
aatgcttatttatgaacaatgggcccagtggcctggaggtaacaggtatg
cttggatgtaacagaagcagaatttctgggtatgtgggagagatttattg
agactcaa
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtgttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatggttgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgatggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
tttggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tctttcaggatctgttgttatgtctccccttttcatttctgattttgtta
attaggatttttgtccctgtgccctttagtgagtctagctaaggttttat
ctatctgttgatttttctcaaaaaaaccaactcctcgtttggtattcttg
aatagttcttcttgttccacttggtgatttcacccctgagttgatattcc
tgcgtctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_112968826_112969994
seq2: B6Ng01-020F21.b_43_1200 (reverse)

seq1  TTGAGTCTCACATAAAATCTTTCCACCATATACCCAGAAAATTTCTGCTT  50
      |||||||||| || |||||| ||  ||| |||||||||||  |||||| |
seq2  TTGAGTCTCA-AT-AAATCTCTC--CCACATACCCAGAAA--TTCTGC-T  43

seq1  TCTGTTTACATCCAAAGCATACCTGTTACCTTCAAG-CACTGTGCACATT  99
      |||| |||||||| ||||||||||||||||| || | ||||| || || |
seq2  TCTG-TTACATCC-AAGCATACCTGTTACCTCCAGGCCACTGGGCCCA-T  90

seq1  TGTTCATAAAATAAGCATTTGGTATTATTTATAAGGAGAAAATGGCACTT  149
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTCAT-AAATAAGCATTTGGTATTATTTATAAGGAGAAAAT-GCACTT  138

seq1  TAGCATTTAAAGGA-TTTTATTATTTCGAGTAGTAGAGTCATTTTGAAC-  197
      ||||  |||||||| |||||||||||||||||||||||||| ||||||| 
seq2  TAGCCATTAAAGGATTTTTATTATTTCGAGTAGTAGAGTCA-TTTGAACA  187

seq1  AGAGCATGTTGGAGGAAATGTTTTTACATGTGCATGTGTTAAGCATGTAG  247
      | ||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  AAAGCATGTTGAAGGAAATG-TTTTACATGTGCATGTGTTAAGCATGTAG  236

seq1  ACTTAAATAGTAAAGTTAGAAGTCTTGTCCTACATCCTAATTTGGATGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATAGTAAAGTTAGAAGTCTTGTCCTACATCCTAATTTGGATGTC  286

seq1  AGTGCCTGTTGAAGAAGAGTTATTACAAATTTTAATAGAAAACTTTTGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGTTGAAGAAGAGTTATTACAAATTTTAATAGAAAACTTTTGAG  336

seq1  AATATTTTGAGACTAATACCGAATGACTTGTAATGAGATCTTTTGGGAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGAGACTAATACCGAATGACTTGTAATGAGATCTTTTGGGAGT  386

seq1  TATATAAATATCCTTACTACTTTGGTACTTGGGAGTCACTGATATCATAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATATCCTTACTACTTTGGTACTTGGGAGTCACTGATATCATAT  436

seq1  GATCCACAGGCATAAAGTTCCAAAAGTTCTTAATGAAGAGCATCTATAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACAGGCATAAAGTTCCAAAAGTTCTTAATGAAGAGCATCTATAAC  486

seq1  CATTCCCATTTAGTGACAGATTCCTGTTGTTATATAGATGATGGTTGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCATTTAGTGACAGATTCCTGTTGTTATATAGATGATGGTTGAGA  536

seq1  TCATCTGGAAAAATAAACCAGAGAGAAAAGAAAGAAAGATAATAGAGTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGAAAAATAAACCAGAGAGAAAAGAAAGAAAGATAATAGAGTTT  586

seq1  ACAAAGTAAGAGTTACCATAGAAACAGAAGGAATCATGATGATATCATAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAAGAGTTACCATAGAAACAGAAGGAATCATGATGATATCATAA  636

seq1  CAGCCAAGATCAAACTTTCATAGCAATTACAACTTCAATAATACATCAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGATCAAACTTTCATAGCAATTACAACTTCAATAATACATCAAA  686

seq1  ACAATTCAGGACAAGTGAAGTGTCCTTGATTTCAATAGAGGTTTTAAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCAGGACAAGTGAAGTGTCCTTGATTTCAATAGAGGTTTTAAGAA  736

seq1  TGTCAGGACTTTAACTTTGGCATCAGGGTTCTGGACACACACACTCCTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGACTTTAACTTTGGCATCAGGGTTCTGGACACACACACTCCTAC  786

seq1  AGAATATCACTGTCATTGGTATTAGTGTTCCTGTCTCACGAATTAAAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATCACTGTCATTGGTATTAGTGTTCCTGTCTCACGAATTAAAGAA  836

seq1  TAAAATTTACAGATCACAGATGATGCATTTTGGAAAGAAGTTTCTTTATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTACAGATCACAGATGATGCATTTTGGAAAGAAGTTTCTTTATG  886

seq1  GATTTATGTCAGTTGATGCTTAATGGAAAAAAGTAGGCAGAGATTCTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATGTCAGTTGATGCTTAATGGAAAAAAGTAGGCAGAGATTCTGTG  936

seq1  TAGCAGGAGTGGGTCACAGAAAATGGAATACCATTGAGGATTGTCCATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAGTGGGTCACAGAAAATGGAATACCATTGAGGATTGTCCATTT  986

seq1  AGACCCAGAAAGGCTTTACTGGATAAAGAACTGTTTAATCAAGTAGGTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAAAGGCTTTACTGGATAAAGAACTGTTTAATCAAGTAGGTCC  1036

seq1  ATCCACAATGTGACATCGAACTGATATTTAGCTTTGAGCATGCCCTAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAATGTGACATCGAACTGATATTTAGCTTTGAGCATGCCCTAACA  1086

seq1  GAGTTCTTAATGCAAGGATGCTCATTTGGGAAAAGAGAGAGAGTAAGAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTAATGCAAGGATGCTCATTTGGGAAAAGAGAGAGAGTAAGAAA  1136

seq1  CCAAACTTTCCTTTTAGAATTC  1169
      ||||||||||||||||||||||
seq2  CCAAACTTTCCTTTTAGAATTC  1158

seq1: chr1_61720388_61720955
seq2: B6Ng01-020F21.g_361_923 (reverse)

seq1  AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA  50
      | ||||| |||||||   ||| ||||||||||||||||| ||||||||| 
seq2  AATAGAC-GCAGGAA--TATC-AACTCAGGGGTGAAATC-ACCAAGTGG-  44

seq1  AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGG-TTCTTT  99
      ||||||||||||||||| ||||||  ||||||||||||||||| || |||
seq2  AACAAGAAGAACTATTC-AAGAAT--ACCAAACGAGGAGTTGGTTTTTTT  91

seq1  GAG-AAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGC  148
      ||| ||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GAGAAAAATCAAC-AGATAGATAAAACCTTAGCTAGACTCACTAAAGGGC  140

seq1  ACAGGGAC-AAAATCCTAATTAACAAAATCAGAAATGAAAA-GGGAGACA  196
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  ACAGGGACAAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGGAGACA  190

seq1  TAACAACAGATCCTG-AAGAAATCCAAAACACCATCAGATCCTTCTACAA  245
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAACAACAGATCCTGAAAGAAATCCAAAACACCATCAGATCCTTCTACAA  240

seq1  AAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTC  290

seq1  TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTA  340

seq1  AACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCC  395
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACAGTCCCATATCACCAAAAGAAATAGAAGCAGTTATTAATAGTCTCCC  390

seq1  AACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGA  440

seq1  CCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATA  490

seq1  GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  540

seq1  GATACCTAAACCACAGAAAGATC  568
      |||||||||||||||||||||||
seq2  GATACCTAAACCACAGAAAGATC  563