BAC Information

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BAC

Clone NameB6Ng01-020H01
Chromosome1 (Build37)
Map Location 177,481,769 - 177,572,743
singlet/doubletdoublet
Overlap geneFh1, Kmo
Upstream geneFmn2, Grem2, Rgs7
Downstream geneOpn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020H01.bB6Ng01-020H01.g
ACCDH853238DH853239
length1,0601,142
definitionDH853238|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H01, 5' end.DH853239|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,571,680 - 177,572,743)(177,481,769 - 177,482,918)
sequence
gaattcattgtttaactgtttaaagcatatcatttttccaaattagagaa
gaccccagagttttcaacacaaaagtgctaacttgtggctcttcctctca
ttctgaagtagaaacttgaccttaacaatcaaatctaaacttggtacaaa
gatggctcagtcatcacacagtgacagtggctgaggaggtgcttgctgtt
aggactagctaatttagtgtgtgtgtgttcagagtgtgcaaggcttgtca
gcatgagcgaggccccagactccactcccggcacatcaaggaaacattat
aaaggatgataagaaatattccaattgtaaagctttgtttaagtcaatgt
ggggaaaagagccttcgcatgctagttatagggctttttgtgccatggga
atcagtagaacagatccatccaatagggccaccagaacttctccatcctg
tctattttagctgtttgggtggcattgccccagaagcaaaagctggtatt
gttcctgccacagtacaagcctgcaacgtccattctaaaaggctaatccc
tagaggccactgtggaaaaaaaaacccacaaggataagacggagattggt
aatgcaatagttttagcacagaccacttcaaacacaacacggtgccttca
aaggagactgcttcgcagtaagggagcatgggaacacagaagcataggag
tgtgaccacagctttgtccacccacctctgtgtattacacagtatcgtga
cagttaccagggcaggctgggagggagagggaaatgtacaaaagccaggg
gatatctgtacgtggtgtgggggaaagagccaagaggcaaacagctagag
gatgaaggaccaggaaaggatttggggagtcaggttttcatgtcatgcat
atccaaactgtgtatctgtgcaaaatgcttcctccatggcacagagcttc
ttcaggaagactcatcctctatcccttttccctctctccctttgtctcct
gtcactctctggtcctttttgggtctttggggtagtgagtgagaatggga
tatggaaatc
gaattctcatataccttaaccttccaccaccaccaccaccaccaccccag
tttttcctattactaactgtgctgtgatgagcacgtttaactatttcttg
tcccatggggttgtaaggaattgcagttttatgtttaataccgaattctt
tacaactaacattttgcattgtggtataactcttaaaggttctaagccaa
gagtggtataatttctatgtataagtctatagagtacattggtgttgact
ccagaattttcattccgtacctagcaaatgtccaatgacatatatccatt
acactgtcatagagcatagtcttgctttctcaaaaatctccactttgccc
attcatcagtccttctttctccctgaagtctctgcaaatactgatgtttc
tattctccccaccatttcccttgtgtaggctggcatggcatgtcagcaga
ttcacttaacatatagccttgacctaggcttctcccttagaagtacacat
ttcaatttcagtcatgacttcatagcttttatttttcatccctgaatgtc
atgccattgtatgtatactgcaatttattcactcagctattgagggttgt
tttgcttggttccaaccttggaccattggaaatgagacttcaatagacat
ttatcttcaggtttttctaaaaattaaaaacaaatattcaattccttttc
cacctgagagagcaattgataggtcatatggggaaaatgtttagttttaa
aatttctgtcagttgtcttctcaagtggcattctttctttctttcttctt
tctttctttcttcttcttctttctttctttctttttctctcttctccttc
tctctctctttctctctctctctctctctctctctttatttctttctttc
ttatctttcataatgttcttttcgacagttactgggcagtgtaagcatgt
tcacaggcttctgacttgaagcacagctcactgttctcagtttctttttc
tgtgtactccatagatactatcaactttttggtgttactttagcaggacc
tgcagtttcacttgtttacaacatgtgcacctgtcttcagggccactctg
gaacagtctcgatagagttgactctacagactaagtcctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177571680_177572743
seq2: B6Ng01-020H01.b_38_1097 (reverse)

seq1  GATTTCCATA-CCCA-TCTCACTCAACATTACACACAAAGACACAAAAAA  48
      |||||||||| |||| |||||||   || ||| | ||||||| |  ||||
seq2  GATTTCCATATCCCATTCTCACT---CACTAC-CCCAAAGACCC--AAAA  44

seq1  AGGAACAGAGAGTGACAAGGAGACAAAGTGAGAGAGGGAAAAAGGGATAG  98
      |||| ||||||||||| ||||||||||| ||||||||| |||||||||||
seq2  AGGACCAGAGAGTGAC-AGGAGACAAAGGGAGAGAGGG-AAAAGGGATAG  92

seq1  AGGATGAGTC-TACTGAAG-AGCTCTGTGCCATGGAGGAAGCATTTTGCA  146
      |||||||||| | |||||| ||||||||||||||||||||||||||||||
seq2  AGGATGAGTCTTCCTGAAGAAGCTCTGTGCCATGGAGGAAGCATTTTGCA  142

seq1  CAAGATACACAGTTTGGATATGCATGACATGAAAACCTGACTCCCCAAAT  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AGATACACAGTTTGGATATGCATGACATGAAAACCTGACTCCCCAAAT  191

seq1  CC-TTCCTGGTCCTTCATCCTCTAGCTGTTTGCCTCTTGGCTCTTTCCCC  245
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGGTCCTTCATCCTCTAGCTGTTTGCCTCTTGGCTCTTTCCCC  241

seq1  CACACCACGTACAGATATCCCCTGGCTTTTGTACATTTCCCTCTCCCTCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACGTACAGATATCCCCTGGCTTTTGTACATTTCCCTCTCCCTCC  291

seq1  CAGCCTGCCCTGGTAACTGTCACGATACTGTGTAATACACAGAGGTGGGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCCCTGGTAACTGTCACGATACTGTGTAATACACAGAGGTGGGT  341

seq1  GGACAAAGCTGTGGTCACACTCCTATGCTTCTGTGTTCCCATGCTCCCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGCTGTGGTCACACTCCTATGCTTCTGTGTTCCCATGCTCCCTT  391

seq1  ACTGCGAAGCAGTCTCCTTTGAAGGCACCGTGTTGTGTTTGAAGTGGTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGAAGCAGTCTCCTTTGAAGGCACCGTGTTGTGTTTGAAGTGGTCT  441

seq1  GTGCTAAAACTATTGCATTACCAATCTCCGTCTTATCCTTGTGGGTTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAAACTATTGCATTACCAATCTCCGTCTTATCCTTGTGGGTTTTT  491

seq1  TTTTCCACAGTGGCCTCTAGGGATTAGCCTTTTAGAATGGACGTTGCAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACAGTGGCCTCTAGGGATTAGCCTTTTAGAATGGACGTTGCAGG  541

seq1  CTTGTACTGTGGCAGGAACAATACCAGCTTTTGCTTCTGGGGCAATGCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTGTGGCAGGAACAATACCAGCTTTTGCTTCTGGGGCAATGCCA  591

seq1  CCCAAACAGCTAAAATAGACAGGATGGAGAAGTTCTGGTGGCCCTATTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACAGCTAAAATAGACAGGATGGAGAAGTTCTGGTGGCCCTATTGG  641

seq1  ATGGATCTGTTCTACTGATTCCCATGGCACAAAAAGCCCTATAACTAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTGTTCTACTGATTCCCATGGCACAAAAAGCCCTATAACTAGCA  691

seq1  TGCGAAGGCTCTTTTCCCCACATTGACTTAAACAAAGCTTTACAATTGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAGGCTCTTTTCCCCACATTGACTTAAACAAAGCTTTACAATTGGA  741

seq1  ATATTTCTTATCATCCTTTATAATGTTTCCTTGATGTGCCGGGAGTGGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTATCATCCTTTATAATGTTTCCTTGATGTGCCGGGAGTGGAG  791

seq1  TCTGGGGCCTCGCTCATGCTGACAAGCCTTGCACACTCTGAACACACACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCCTCGCTCATGCTGACAAGCCTTGCACACTCTGAACACACACA  841

seq1  CACTAAATTAGCTAGTCCTAACAGCAAGCACCTCCTCAGCCACTGTCACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATTAGCTAGTCCTAACAGCAAGCACCTCCTCAGCCACTGTCACT  891

seq1  GTGTGATGACTGAGCCATCTTTGTACCAAGTTTAGATTTGATTGTTAAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGACTGAGCCATCTTTGTACCAAGTTTAGATTTGATTGTTAAGG  941

seq1  TCAAGTTTCTACTTCAGAATGAGAGGAAGAGCCACAAGTTAGCACTTTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTCTACTTCAGAATGAGAGGAAGAGCCACAAGTTAGCACTTTTG  991

seq1  TGTTGAAAACTCTGGGGTCTTCTCTAATTTGGAAAAATGATATGCTTTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAACTCTGGGGTCTTCTCTAATTTGGAAAAATGATATGCTTTAA  1041

seq1  ACAGTTAAACAATGAATTC  1064
      |||||||||||||||||||
seq2  ACAGTTAAACAATGAATTC  1060

seq1: chr1_177481769_177482918
seq2: B6Ng01-020H01.g_64_1205

seq1  GAATTCTCATATACCTTAACCTTCCACCACCACCACCACCACCACCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATACCTTAACCTTCCACCACCACCACCACCACCACCCCAG  50

seq1  TTTTTCCTATTACTAACTGTGCTGTGATGAGCACGTTTAACTATTTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTATTACTAACTGTGCTGTGATGAGCACGTTTAACTATTTCTTG  100

seq1  TCCCATGGGGTTGTAAGGAATTGCAGTTTTATGTTTAATACCGAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGGGTTGTAAGGAATTGCAGTTTTATGTTTAATACCGAATTCTT  150

seq1  TACAACTAACATTTTGCATTGTGGTATAACTCTTAAAGGTTCTAAGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTAACATTTTGCATTGTGGTATAACTCTTAAAGGTTCTAAGCCAA  200

seq1  GAGTGGTATAATTTCTATGTATAAGTCTATAGAGTACATTGGTGTTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTATAATTTCTATGTATAAGTCTATAGAGTACATTGGTGTTGACT  250

seq1  CCAGAATTTTCATTCCGTACCTAGCAAATGTCCAATGACATATATCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTTTCATTCCGTACCTAGCAAATGTCCAATGACATATATCCATT  300

seq1  ACACTGTCATAGAGCATAGTCTTGCTTTCTCAAAAATCTCCACTTTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCATAGAGCATAGTCTTGCTTTCTCAAAAATCTCCACTTTGCCC  350

seq1  ATTCATCAGTCCTTCTTTCTCCCTGAAGTCTCTGCAAATACTGATGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGTCCTTCTTTCTCCCTGAAGTCTCTGCAAATACTGATGTTTC  400

seq1  TATTCTCCCCACCATTTCCCTTGTGTAGGCTGGCATGGCATGTCAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCCCACCATTTCCCTTGTGTAGGCTGGCATGGCATGTCAGCAGA  450

seq1  TTCACTTAACATATAGCCTTGACCTAGGCTTCTCCCTTAGAAGTACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTAACATATAGCCTTGACCTAGGCTTCTCCCTTAGAAGTACACAT  500

seq1  TTCAATTTCAGTCATGACTTCATAGCTTTTATTTTTCATCCCTGAATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCAGTCATGACTTCATAGCTTTTATTTTTCATCCCTGAATGTC  550

seq1  ATGCCATTGTATGTATACTGCAATTTATTCACTCAGCTATTGAGGGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTGTATGTATACTGCAATTTATTCACTCAGCTATTGAGGGTTGT  600

seq1  TTTGCTTGGTTCCAACCTTGGACCATTGGAAATGAGACTTCAATAGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGGTTCCAACCTTGGACCATTGGAAATGAGACTTCAATAGACAT  650

seq1  TTATCTTCAGGTTTTTCTAAAAATTAAAAACAAATATTCAATTCCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCAGGTTTTTCTAAAAATTAAAAACAAATATTCAATTCCTTTTC  700

seq1  CACCTGAGAGAGCAATTGATAGGTCATATGGGGAAAATGTTTAGTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGAGAGCAATTGATAGGTCATATGGGGAAAATGTTTAGTTTTAA  750

seq1  AATTTCTGTCAGTTGTCTTCTCAAGTGGCATTTCTTTCTTTCTTTCTTTC  800
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  AATTTCTGTCAGTTGTCTTCTCAAGTGGCA-TTCTTTCTTTCTTTC-TTC  798

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTCTCTTT  850
      |||||||||||| |||||   ||||||||||||||| |||||||||| ||
seq2  TTTCTTTCTTTC-TTCTT--CTTCTTTCTTTCTTTC-TTTTTCTCTC-TT  843

seq1  CTCCTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTTATTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTTATTTCT  893

seq1  TTCTTTCTTTATCTTTCATAATGTTCTTTTCGACAGTTACTGGGCAAGTG  950
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCTTTC-TTATCTTTCATAATGTTCTTTTCGACAGTTACTGGGC-AGTG  941

seq1  TAAGGCATGTTCACAGGC-TCTGACGTGAAGCACAGCTCACTG-TCTCAA  998
      ||| |||||||||||||| |||||| ||||||||||||||||| |||| |
seq2  TAA-GCATGTTCACAGGCTTCTGACTTGAAGCACAGCTCACTGTTCTC-A  989

seq1  GTTTC-TTTTCTGTGTACCCCATAGATACTATCAGCTGTTGTGTG-TACT  1046
      ||||| |||||||||||| ||||||||||||||| || ||  ||| ||||
seq2  GTTTCTTTTTCTGTGTACTCCATAGATACTATCAACTTTTTGGTGTTACT  1039

seq1  TTAGCAGGAACTGCAG-TCCACT--GTTACAGCATGTGCACCGTGCTTCA  1093
      ||||||||| |||||| | ||||   ||||| ||||||||||   |||||
seq2  TTAGCAGGACCTGCAGTTTCACTTGTTTACAACATGTGCACCTGTCTTCA  1089

seq1  GGGGCAC-CTTGAACAATGTCTCAGAATAAGAAGTGA-GCTACAGACTAA  1141
      ||| ||| || |||||  ||||| ||   |||  |||  |||||||||||
seq2  GGGCCACTCTGGAACA--GTCTC-GA--TAGAGTTGACTCTACAGACTAA  1134

seq1  GTCACTAGG  1150
      ||| |||||
seq2  GTC-CTAGG  1142