BAC Information

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BAC

Clone NameB6Ng01-020H07
Chromosome1 (Build37)
Map Location 83,056,067 - 83,057,245
singlet/doubletsinglet
Overlap genenone
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik
Downstream gene5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020H07.bB6Ng01-020H07.g
ACCDH853250DH853251
length1,149899
definitionDH853250|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H07, 5' end.DH853251|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcatctaaggagacatttatgagtgtcttctgcatgaggctgg
atcctccaggttctgggcagtcaaacagttgtgtaggaacagccctccta
gcccctggttgacgagacgcatatcaagcgaatggattttaatgctttca
ttctccttcttttcccactggattaataaagagatcccaattggaagccc
tggaacatggggatcccagagtagatacggccctgaaaagccagatcatc
catctgtgacctgagcctgcatgtaagttcagtagagacagtggtgtggt
gtgtgtagcgcatgcacagcacatgtacagcacatgcatagcacatgcac
accacatgcataccacatgcacaccacatgaacaacacatgcacggatct
ctgctgtggcttattggtggtatctaaattagccaaattgccctactgtg
aagacaactgagcaagtatgtagcctcatccactgcacatgactgcggca
ggtgcttgggaccagaagtggaaacctggcaggctgagttagctggacat
ttccagtcaccatttcattttaagggagttttgggatttcaaaaataatc
atacaacagatcaacgaaagacaggagcttcgcccttgctgctgtttagg
ccaggctgccacagaattgtattgttaacattagacagcacataattatt
ttactacaactttaaaggtttttctagtgaattaagaatcccagggaacc
atgaagagaacatctgtgctttaaagtgagattgctcattttagggctgc
ctgccatgtcccttttgatgccagtttgtaccatgaattcttctgagaac
attttcataaatgggcatgttcccaaaaagagttcccaaagatggataat
tgtctgacctgcaatgactaagacatagagatagacacacagtactttta
tctgacctagtttgatattcatagctgtaaagactatatctgcagaaagt
gtacaaaatattctcagcattattattttaagtaccaatagtacttaaac
tgccagccttatgaagtacagctgaaagaaagctgccgatctgcagatct
aatatcgatggaaagtaagttaaagttagctacatgagttaggatgtca
gaattctctccctctcctcggtggtaaacagtgcctgcagacgctgctgg
caattgtcccaggtaggctggtgggagtacatcagagactctatcagtcc
tgtgagccctgtaagattttctgagaaaggggggtgattgactttctagt
tatagagatcagaggaggaaaagggccaatacggtagaagttgtagacca
ttctggtcagccagaggagccccaatagccctgaggggaagcttcatggt
tgaatcggctggcccctcaggggtggctcctcgcagtctccttgttcctg
ctggagcgggctgaaggagctgggggttggggaacttgaaggtggggtgg
aggctgggaatcaggccactcaggggtttcctctatctctgggtagatct
taggggtgagtgccagtggagtgcggcaatcgccatcttctttaggctgt
gacttctgtgtcccgttcacagcactctctcggacagccaggatcctagt
gcttgggcgtaagggtgggaaaaaatggccgaatccacggaggcagatac
cgcgccaaatcctcccacactgtgatgtatggttgctggtctggttgcga
tcctggtccttcctgaaagacaatggcctttatggccctaatggtgggaa
ggtcgaacttcccctcagctggccagcctactccaaaggcaggcctttcc
aaggaacagaaagtcaaccaaggtttcttttcactatcactgatagattc
cgtctcttgccctaacatcagtccaatggtccttagtcaagataatgggt
agacacagtctgtctcataaggaaatcacaacaaaacaaacagtaacaga
gacagggacccattatgtccaacttctcgtcacgatatatttgtacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83056067_83057245
seq2: B6Ng01-020H07.b_47_1195 (reverse)

seq1  TGACATCCTAACTCATAGTTAGCTCTAACTTTTACTTACCTCTTCAATCC  50
      ||||||||||||||||   |||  |||||||| ||||||   ||| || |
seq2  TGACATCCTAACTCAT--GTAG--CTAACTTTAACTTAC--TTTCCAT-C  43

seq1  TATATTTAGATCCTGGCACGAATCTGGCAGCTTTCTATCAGCTAGTACTT  100
       ||| |||||| |||   |  ||| ||||||||||| |||||| ||||||
seq2  GATA-TTAGAT-CTG---CAGATC-GGCAGCTTTCTTTCAGCT-GTACTT  86

seq1  TCAATAAGGCCTGGCATGTTGTAAGTACTTAATGGGTACCTTTAAAATTA  150
         |||||| |||||| ||| ||||||||  || |||||  |||||||  
seq2  --CATAAGG-CTGGCA-GTT-TAAGTACT--ATTGGTAC--TTAAAAT--  125

seq1  AATAAATGCTGAGAATATTTTGTAACACTCTCTTGCAGATATAGTCTTTT  200
      ||| ||||||||||||||||||| ||||| || ||||||||||||| |||
seq2  AAT-AATGCTGAGAATATTTTGT-ACACTTTC-TGCAGATATAGTC-TTT  171

seq1  ACAGCTATGAATATCAAACCTAGGTCAGATAAAAGTACTGTGTGTCTATC  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAGCTATGAATATCAAA-CTAGGTCAGATAAAAGTACTGTGTGTCTATC  220

seq1  TCTATGTCTTAGTCATTGCAGGTCAGACAATTATCCATCTTTGGGAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCTTAGTCATTGCAGGTCAGACAATTATCCATCTTTGGGAACTC  270

seq1  TTTTTGGGAACATGCCCCTTTATGAAAATGTTCTCAGAAGAATTCATGGT  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTGGGAACATGCCCATTTATGAAAATGTTCTCAGAAGAATTCATGGT  320

seq1  ACAAACTGGCATCAAAAGGGACATGGCAGGCAGCCCTAAAATGAGCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGGCATCAAAAGGGACATGGCAGGCAGCCCTAAAATGAGCAATC  370

seq1  TCACTTTAAAGCACAGATGTTCTCTTCATGGTTCCCTGGGATTCTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAAAGCACAGATGTTCTCTTCATGGTTCCCTGGGATTCTTAATT  420

seq1  CACTAGAAAAACCTTTAAAGTTGTAGTAAAATAATTATGTGCTGTCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAAAAACCTTTAAAGTTGTAGTAAAATAATTATGTGCTGTCTAAT  470

seq1  GTTAACAATACAATTCTGTGGCAGCCTGGCCTAAACAGCAGCAAGGGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAATACAATTCTGTGGCAGCCTGGCCTAAACAGCAGCAAGGGCGA  520

seq1  AGCTCCTGTCTTTCGTTGATCTGTTGTATGATTATTTTTGAAATCCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGTCTTTCGTTGATCTGTTGTATGATTATTTTTGAAATCCCAAA  570

seq1  ACTCCCTTAAAATGAAATGGTGACTGGAAATGTCCAGCTAACTCAGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTTAAAATGAAATGGTGACTGGAAATGTCCAGCTAACTCAGCCTG  620

seq1  CCAGGTTTCCACTTCTGGTCCCAAGCACCTGCCGCAGTCATGTGCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTCCACTTCTGGTCCCAAGCACCTGCCGCAGTCATGTGCAGTGG  670

seq1  ATGAGGCTACATACTTGCTCAGTTGTCTTCACAGTAGGGCAATTTGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTACATACTTGCTCAGTTGTCTTCACAGTAGGGCAATTTGGCTA  720

seq1  ATTTAGATACCACCAATAAGCCACAGCAGAGATCCGTGCATGTGTTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATACCACCAATAAGCCACAGCAGAGATCCGTGCATGTGTTGTTC  770

seq1  ATGTGGTGTGCATGTGGTATGCATGTGGTGTGCATGTGCTATGCATGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGTGCATGTGGTATGCATGTGGTGTGCATGTGCTATGCATGTGC  820

seq1  TGTACATGTGCTGTGCATGCGCTACACACACCACACCACTGTCTCTACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTGCTGTGCATGCGCTACACACACCACACCACTGTCTCTACTG  870

seq1  AACTTACATGCAGGCTCAGGTCACAGATGGATGATCTGGCTTTTCAGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACATGCAGGCTCAGGTCACAGATGGATGATCTGGCTTTTCAGGGC  920

seq1  CGTATCTACTCTGGGATCCCCATGTTCCAGGGCTTCCAATTGGGATCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTACTCTGGGATCCCCATGTTCCAGGGCTTCCAATTGGGATCTCT  970

seq1  TTATTAATCCAGTGGGAAAAGAAGGAGAATGAAAGCATTAAAATCCATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATCCAGTGGGAAAAGAAGGAGAATGAAAGCATTAAAATCCATTC  1020

seq1  GCTTGATATGCGTCTCGTCAACCAGGGGCTAGGAGGGCTGTTCCTACACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATATGCGTCTCGTCAACCAGGGGCTAGGAGGGCTGTTCCTACACA  1070

seq1  ACTGTTTGACTGCCCAGAACCTGGAGGATCCAGCCTCATGCAGAAGACAC  1150
      |||||||||||||||||||||||||||||||||||               
seq2  ACTGTTTGACTGCCCAGAACCTGGAGGATCCAGCCNNNNNNNNNNNNNNN  1120

seq1  TCATAAATGTCTCCTTAGATGCAGAATTC  1179
        |||||||||||||||||||||||||||
seq2  NNATAAATGTCTCCTTAGATGCAGAATTC  1149